Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac9g2297 ATGTTCCATGCCACCAAGAAACCCTCCTCTATGACTTCTCATGACAGGCCAATGTGTGTCCAAGGAGATTCCGGTCTCGTCCTCACCACCGACCCCAAACCCCGACTCCGCTGGACCGTCGAGCTCCACGAGCGCTTCGTCGACGCTGTCACTCAGCTCGGAGGACCCGATAAGGCCACTCCCAAGACCATCATGAGGGTTATGGGCGTCAAGGGCCTCACTCTCTACCATCTCAAGAGCCACCTTCAGAAATTCAGACTCGGAAAGCAACCCCACAAGGAATTCAACGACCAATCAATAAAGGATGGCATGAGAGCTTCAGCTTTGGAACTTCAGAGAAACAGTGGATCTTCTTCCAGCTTAATGGACCGTAGCATGAACGAAATGCAAATGGAGGTTCAGAGACGACTGCATGAACAAATTGAGGTACAAAGACACCTTCAATTGAGAATTGAGGCTCAAGGCAAGTACATGCAAAGCATATTGGAGAAGGCTTGCCAAACCCTCGCCGGCGAAAACATGGCCGCCGCCTCCGCCTCTGCCGCCGGACCTTTCAAAACCACTTCCAACAACATTGGAACAACCACCAATCTCGTTTCAGACGCCGCCATCAAAGACTTCATTTCCCCTCCTCCTCACACCTTCCCTCCTTTTCAAGACATAAACAACCTATTCACCTCCGAGCCGCCGCCTCCGCCGCCTCTCATCGACTGCCTCAAGAAGCCCAGTCCCTTCATCTCCGGCGCCGGTAAGACCCCCATTTTCTGGCCGGACGATCTCCGGCTCCAAGACTTAGGAACCTCCCCAGCCACCCTAGCTCCACCGCCGCCGTCCATCGGTGGCCCGACCGACTTGGACACTCTTCAGCTGGAAATGTATGAATCTAAGCCACCGCCGCCACCGCCACCACCGCTGCTCAGCGTTGGCAACGACACGATGAATGAGAAGAAGTTCGACGTGTCGTTAAAGCTCGAGAGGCCATCGCCGCGGCAGTCGTCGGGACATTCCGATGAGAGGGTGAATAATGGTATGGCTAACAACAACAATAACCCTACAATGTCACAGCCACAGGGAAGAAATTCTTCATTTGGTTAA 1095 53.7 MFHATKKPSSMTSHDRPMCVQGDSGLVLTTDPKPRLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRLGKQPHKEFNDQSIKDGMRASALELQRNSGSSSSLMDRSMNEMQMEVQRRLHEQIEVQRHLQLRIEAQGKYMQSILEKACQTLAGENMAAASASAAGPFKTTSNNIGTTTNLVSDAAIKDFISPPPHTFPPFQDINNLFTSEPPPPPPLIDCLKKPSPFISGAGKTPIFWPDDLRLQDLGTSPATLAPPPPSIGGPTDLDTLQLEMYESKPPPPPPPPLLSVGNDTMNEKKFDVSLKLERPSPRQSSGHSDERVNNGMANNNNNPTMSQPQGRNSSFG 364
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 42305878 42308726 + Lag0009784.1 Lac9g2297 621223

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lac9g2297 364 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 30 90 IPR017930 -
Lac9g2297 364 SUPERFAMILY Homeodomain-like 32 88 IPR009057 -
Lac9g2297 364 Gene3D - 32 90 - -
Lac9g2297 364 Pfam Myb-like DNA-binding domain 35 85 IPR001005 -
Lac9g2297 364 Pfam MYB-CC type transfactor, LHEQLE motif 129 168 IPR025756 -
Lac9g2297 364 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 8 187 IPR046955 GO:0003700(InterPro)
Lac9g2297 364 MobiDBLite consensus disorder prediction 326 364 - -
Lac9g2297 364 MobiDBLite consensus disorder prediction 291 364 - -
Lac9g2297 364 FunFam Myb family transcription factor 32 90 - -
Lac9g2297 364 NCBIfam myb-like DNA-binding domain, SHAQKYF class 33 88 IPR006447 GO:0003677(InterPro)
Lac9g2297 364 MobiDBLite consensus disorder prediction 1 17 - -
Lac9g2297 364 MobiDBLite consensus disorder prediction 266 285 - -
Lac9g2297 364 MobiDBLite consensus disorder prediction 1 25 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac9g2297 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac12g0030 Lac-Chr12:448178 Lac9g2297 Lac-Chr9:42305878 3.40E-88 dispersed
Lac7g0460 Lac-Chr7:3641995 Lac9g2297 Lac-Chr9:42305878 4.10E-40 dispersed
Lac7g1621 Lac-Chr7:19588519 Lac9g2297 Lac-Chr9:42305878 6.90E-28 dispersed
Lac9g2191 Lac-Chr9:41352155 Lac9g2297 Lac-Chr9:42305878 1.90E-12 dispersed
Lac9g2297 Lac-Chr9:42305878 Lac1g1842 Lac-Chr1:40083803 1.30E-13 dispersed
Lac9g2297 Lac-Chr9:42305878 Lac6g1592 Lac-Chr6:22108782 5.00E-34 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lac7g0460 . 12 319 G2-like Transcription Factor Family AT3G24120 56.6 3.9e-77 285.8
Lac1g3111 . 31 195 G2-like Transcription Factor Family AT3G24120 58.0 3.7e-43 172.9
Lac12g0030 . 18 194 G2-like Transcription Factor Family AT3G24120 57.2 4.1e-42 169.5
Lac9g2297 . 22 167 G2-like Transcription Factor Family AT3G24120 61.7 8.5e-40 161.8
Lac11g2446 . 190 391 G2-like Transcription Factor Family AT5G16560 50.7 4.7e-41 166.4
Lac11g2446 . 198 391 G2-like Transcription Factor Family AT4G17695 50.3 1.6e-36 151.0
Lac2g0265 . 10 183 G2-like Transcription Factor Family AT5G42630 58.2 2.6e-41 166.4
Lac6g0365 . 16 162 G2-like Transcription Factor Family AT5G42630 60.6 2.4e-39 159.8
Lac7g2753 . 1 322 G2-like Transcription Factor Family AT5G59570 50.7 1.9e-63 240.4
Lac9g2452 . 19 216 G2-like Transcription Factor Family AT5G59570 50.2 5.5e-39 159.1
Lac13g0461 . 19 260 G2-like Transcription Factor Family AT1G25550 50.6 4.0e-52 202.6
Lac8g1421 . 20 266 G2-like Transcription Factor Family AT1G25550 54.2 4.5e-51 199.1
Lac7g2753 . 1 295 G2-like Transcription Factor Family AT3G46640 50.7 6.0e-63 238.8
Lac1g1554 . 1 302 G2-like Transcription Factor Family AT5G05090 56.9 2.8e-74 276.2
Lac10g2310 . 1 286 G2-like Transcription Factor Family AT5G05090 57.4 1.5e-72 270.4
Lac7g0460 . 12 319 G2-like Transcription Factor Family AT4G13640 56.7 1.2e-62 237.7
Lac7g0460 . 12 319 G2-like Transcription Factor Family AT3G24120 56.6 3.9e-77 285.8
Lac1g3111 . 31 195 G2-like Transcription Factor Family AT3G24120 58.0 3.7e-43 172.9
Lac12g0030 . 18 194 G2-like Transcription Factor Family AT3G24120 57.2 4.1e-42 169.5
Lac9g2297 . 22 167 G2-like Transcription Factor Family AT3G24120 61.7 8.5e-40 161.8
Lac9g2297 . 1 364 G2-like Transcription Factor Family AT1G79430 53.5 9.1e-81 298.1
Lac12g0030 . 3 356 G2-like Transcription Factor Family AT1G79430 52.8 1.2e-80 297.7
Lac7g0460 . 44 208 G2-like Transcription Factor Family AT1G79430 61.2 1.7e-39 161.0
Lac1g3110 . 85 330 G2-like Transcription Factor Family AT2G01060 62.8 4.2e-58 222.2
Lac1g1554 . 1 302 G2-like Transcription Factor Family AT3G10760 62.5 2.4e-91 333.2
Lac10g2310 . 1 286 G2-like Transcription Factor Family AT3G10760 57.5 4.2e-88 322.4
Lac1g1554 . 1 204 G2-like Transcription Factor Family AT2G40970 60.8 1.6e-60 230.3
Lac3g1914 . 485 626 G2-like Transcription Factor Family AT4G28610 71.3 3.5e-44 176.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001069 3 4 3 4 3 2 4 2 2 2 2 2 4 2 2 4 2 3 3 2 2 2 2 2 2 2 1 6 5 2 81
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
24482 PF00249 Myb_DNA-binding 2.00E-06 CL0123 Lac TF