Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac9g2297 ATGTTCCATGCCACCAAGAAACCCTCCTCTATGACTTCTCATGACAGGCCAATGTGTGTCCAAGGAGATTCCGGTCTCGTCCTCACCACCGACCCCAAACCCCGACTCCGCTGGACCGTCGAGCTCCACGAGCGCTTCGTCGACGCTGTCACTCAGCTCGGAGGACCCGATAAGGCCACTCCCAAGACCATCATGAGGGTTATGGGCGTCAAGGGCCTCACTCTCTACCATCTCAAGAGCCACCTTCAGAAATTCAGACTCGGAAAGCAACCCCACAAGGAATTCAACGACCAATCAATAAAGGATGGCATGAGAGCTTCAGCTTTGGAACTTCAGAGAAACAGTGGATCTTCTTCCAGCTTAATGGACCGTAGCATGAACGAAATGCAAATGGAGGTTCAGAGACGACTGCATGAACAAATTGAGGTACAAAGACACCTTCAATTGAGAATTGAGGCTCAAGGCAAGTACATGCAAAGCATATTGGAGAAGGCTTGCCAAACCCTCGCCGGCGAAAACATGGCCGCCGCCTCCGCCTCTGCCGCCGGACCTTTCAAAACCACTTCCAACAACATTGGAACAACCACCAATCTCGTTTCAGACGCCGCCATCAAAGACTTCATTTCCCCTCCTCCTCACACCTTCCCTCCTTTTCAAGACATAAACAACCTATTCACCTCCGAGCCGCCGCCTCCGCCGCCTCTCATCGACTGCCTCAAGAAGCCCAGTCCCTTCATCTCCGGCGCCGGTAAGACCCCCATTTTCTGGCCGGACGATCTCCGGCTCCAAGACTTAGGAACCTCCCCAGCCACCCTAGCTCCACCGCCGCCGTCCATCGGTGGCCCGACCGACTTGGACACTCTTCAGCTGGAAATGTATGAATCTAAGCCACCGCCGCCACCGCCACCACCGCTGCTCAGCGTTGGCAACGACACGATGAATGAGAAGAAGTTCGACGTGTCGTTAAAGCTCGAGAGGCCATCGCCGCGGCAGTCGTCGGGACATTCCGATGAGAGGGTGAATAATGGTATGGCTAACAACAACAATAACCCTACAATGTCACAGCCACAGGGAAGAAATTCTTCATTTGGTTAA 1095 53.7 MFHATKKPSSMTSHDRPMCVQGDSGLVLTTDPKPRLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRLGKQPHKEFNDQSIKDGMRASALELQRNSGSSSSLMDRSMNEMQMEVQRRLHEQIEVQRHLQLRIEAQGKYMQSILEKACQTLAGENMAAASASAAGPFKTTSNNIGTTTNLVSDAAIKDFISPPPHTFPPFQDINNLFTSEPPPPPPLIDCLKKPSPFISGAGKTPIFWPDDLRLQDLGTSPATLAPPPPSIGGPTDLDTLQLEMYESKPPPPPPPPLLSVGNDTMNEKKFDVSLKLERPSPRQSSGHSDERVNNGMANNNNNPTMSQPQGRNSSFG 364
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 42305878 42308726 + Lag0009784.1 Lac9g2297 621223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac9g2297 364 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 30 90 IPR017930 -
Lac9g2297 364 SUPERFAMILY Homeodomain-like 32 88 IPR009057 -
Lac9g2297 364 Gene3D - 32 90 - -
Lac9g2297 364 Pfam Myb-like DNA-binding domain 35 85 IPR001005 -
Lac9g2297 364 Pfam MYB-CC type transfactor, LHEQLE motif 129 168 IPR025756 -
Lac9g2297 364 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 8 187 IPR046955 GO:0003700(InterPro)
Lac9g2297 364 MobiDBLite consensus disorder prediction 326 364 - -
Lac9g2297 364 MobiDBLite consensus disorder prediction 291 364 - -
Lac9g2297 364 FunFam Myb family transcription factor 32 90 - -
Lac9g2297 364 NCBIfam myb-like DNA-binding domain, SHAQKYF class 33 88 IPR006447 GO:0003677(InterPro)
Lac9g2297 364 MobiDBLite consensus disorder prediction 1 17 - -
Lac9g2297 364 MobiDBLite consensus disorder prediction 266 285 - -
Lac9g2297 364 MobiDBLite consensus disorder prediction 1 25 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac12g0030 Lac-Chr12:448178 Lac9g2297 Lac-Chr9:42305878 3.40E-88 dispersed
Lac7g0460 Lac-Chr7:3641995 Lac9g2297 Lac-Chr9:42305878 4.10E-40 dispersed
Lac7g1621 Lac-Chr7:19588519 Lac9g2297 Lac-Chr9:42305878 6.90E-28 dispersed
Lac9g2191 Lac-Chr9:41352155 Lac9g2297 Lac-Chr9:42305878 1.90E-12 dispersed
Lac9g2297 Lac-Chr9:42305878 Lac1g1842 Lac-Chr1:40083803 1.30E-13 dispersed
Lac9g2297 Lac-Chr9:42305878 Lac6g1592 Lac-Chr6:22108782 5.00E-34 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
24482 PF00249 Myb_DNA-binding 2.00E-06 CL0123 Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac9g2297 - - - 0.0