Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac9g2320 ATGAAGTTCTGTTCAGCATCAGTGCTTTCTCTGTTTTTTGTTAGTATTAATCTACTTCACCTTGCCATCGCCGACCTGAAATCAGACAAGCAAGCTCTTCTTAACTTTGTATCTTCTGTTCCACATCGTCGGAGCCTCAACTGGAACGATACTACATCAATTTGCTCATCTTGGGTTGGCATTACTTGCAGTGCAGATGGAACTCATGTGCTTACCCTTCGACTACCTGGGATCGGACTCGTCGGTTCAATTCCTCCTAACACTCTAGGGAAACTTGATGGCCTCAAGATTCTCAGTCTTCGTTCCAACCTCCTGAGTGGAAAAATACCATCCGATATTACCTCACTTCCTTCTCTCCAATATCTTTATCTCCAACGTAATAACTTCTCTGGTGACTTTCCTTCTTCCCTTTCACCTACACTTAATGTATTGGATCTATCATTCAATTCATTAGAAGGAAAGATTTCAAAGGCTATCCAAAATTTGACACAACTAACTGGATTGAACCTCCAGAACAACAATCTTTCTGGTTCTATACCAGATATCAACCTCCCTAAGCTCAAGCATTTCAATATAAGTTATAACCATCTCAATGGCTCTATACCAACTTTCTTTAAGACGTTCCCAAATTCATCCTTCATTGGAAATCCTTTATTATGTGGATTGCCTCTAAAATCTTGCTCCATAGTCCTATCTCCAGCTCCTAATACTCCACCTTCACCTTCCATTTCTCAAAAGCAGAGCTCCAAAAAGCTGAAGATGGGAGTCATCATTGCTATTGCAGTTGGTGGATTTTTCCTTCTATTTCTTGTAGTTCTTTTTGTGGTTTTGTGCTGTTTAAAGAAAAAGGACGGTGGAGGCACCGGTGCAAGAAAAGGGAAAGTTTCTGGTGGTGGGAGAAGTGAAAAACCGAAGGAGGAGTTTGGAAGTGGTGTGCAGGAGCCTGAGAAAAACAAGCTGGTGTTTTTTGATGGCTGTTCATTTAATTTTGATCTTGAAGACCTATTAAGGGCTTCAGCTGAAGTGCTTGGAAAGGGCAGCTATGGAACAGCTTATAAAGCTGTCCTGGAGGAACCTACCACTGTTGTGGTGAAAAGATTGAAGGAAGTGGTGGTGGGGAAGAGGGAATTTGAACAACAGATGGACATAGTGGGAAGGGTCGGGCAGCACCCGAACGTCATGCCACTCCGAGCATATTATTACTCAAAGGATGAAAAGCTCCTTGTTTATGATTATGTCCCAGGAGGCAGCTTGTCATCACTCTTGCATGGAAACAGAGGAGGGGAAAGAACTCCACTTGACTGGGACACAAGAGTGAAAATTGCTCTTGCAACAGCAAAGGGAATTGCTCATATTCACACAGTGGGTGGTCCAAAATTCACCCATGGAAATATCAAGGCCTCCAATGTTCTCCTAAACCAAGATGTCAATGCTTGTGTCTCTGACTTTGGCCTTACCCCTCTTATGAATGTCCCAACTTCTCGAACTGCAGGTTATCGTGCGCCTGAGGTGATCGAAGCTCGCAAACACACACACAAGTCAGATGTTTACAGCTTTGGCGTTCTTCTTCTCGAAATGCTAACTGGAAAAGCTCCCCTCCAATCACCTGGTCGTGACGAAATGGTCGATCTTCCTCGGTGGGTCCAGTCGGTTGTGAGGGAGGAATGGACAGCTGAGGTTTTCGATGTTGAGCTAATGAGGTACCAGAATATTGAAGAAGAGATGGTGCAGATGTTACAGATAGCAATGACTTGTGTAGCGAAGTTGCCCGACATGAGACCGAACATGGACGAAGTAGTTAGAATGATCGAAGAAATCCGGCAATCTGACTCGGAGAACCGGCCATCTTCCGAAGAGAACAAATCCAAGGACTCAAATGTGCAGACCCCTTGA 1893 44.0 MKFCSASVLSLFFVSINLLHLAIADLKSDKQALLNFVSSVPHRRSLNWNDTTSICSSWVGITCSADGTHVLTLRLPGIGLVGSIPPNTLGKLDGLKILSLRSNLLSGKIPSDITSLPSLQYLYLQRNNFSGDFPSSLSPTLNVLDLSFNSLEGKISKAIQNLTQLTGLNLQNNNLSGSIPDINLPKLKHFNISYNHLNGSIPTFFKTFPNSSFIGNPLLCGLPLKSCSIVLSPAPNTPPSPSISQKQSSKKLKMGVIIAIAVGGFFLLFLVVLFVVLCCLKKKDGGGTGARKGKVSGGGRSEKPKEEFGSGVQEPEKNKLVFFDGCSFNFDLEDLLRASAEVLGKGSYGTAYKAVLEEPTTVVVKRLKEVVVGKREFEQQMDIVGRVGQHPNVMPLRAYYYSKDEKLLVYDYVPGGSLSSLLHGNRGGERTPLDWDTRVKIALATAKGIAHIHTVGGPKFTHGNIKASNVLLNQDVNACVSDFGLTPLMNVPTSRTAGYRAPEVIEARKHTHKSDVYSFGVLLLEMLTGKAPLQSPGRDEMVDLPRWVQSVVREEWTAEVFDVELMRYQNIEEEMVQMLQIAMTCVAKLPDMRPNMDEVVRMIEEIRQSDSENRPSSEENKSKDSNVQTP 630
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 42535624 42539235 - Lag0009807.1 Lac9g2320 621246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac9g2320 630 Pfam Protein kinase domain 341 601 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac9g2320 630 ProSiteProfiles Protein kinase domain profile. 337 630 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac9g2320 630 MobiDBLite consensus disorder prediction 296 310 - -
Lac9g2320 630 SUPERFAMILY L domain-like 37 226 - -
Lac9g2320 630 Gene3D Transferase(Phosphotransferase) domain 1 413 629 - -
Lac9g2320 630 PANTHER OS05G0588300 PROTEIN 15 620 IPR050994 -
Lac9g2320 630 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 413 618 - -
Lac9g2320 630 Gene3D Phosphorylase Kinase; domain 1 306 412 - -
Lac9g2320 630 CDD STKc_IRAK 343 606 - -
Lac9g2320 630 Gene3D Ribonuclease Inhibitor 22 84 IPR032675 -
Lac9g2320 630 Gene3D Ribonuclease Inhibitor 85 230 IPR032675 -
Lac9g2320 630 FunFam pollen receptor-like kinase 1 305 412 - -
Lac9g2320 630 SUPERFAMILY Protein kinase-like (PK-like) 341 604 IPR011009 -
Lac9g2320 630 Pfam Leucine rich repeat N-terminal domain 27 64 IPR013210 -
Lac9g2320 630 Pfam Leucine Rich Repeat 165 181 IPR001611 GO:0005515(InterPro)
Lac9g2320 630 Pfam Leucine Rich Repeat 186 207 IPR001611 GO:0005515(InterPro)
Lac9g2320 630 Pfam Leucine Rich Repeat 141 162 IPR001611 GO:0005515(InterPro)
Lac9g2320 630 FunFam Leucine-rich repeat receptor-like protein kinase 139 227 - -
Lac9g2320 630 Pfam Leucine rich repeat 82 129 IPR001611 GO:0005515(InterPro)
Lac9g2320 630 ProSitePatterns Protein kinases ATP-binding region signature. 343 374 IPR017441 GO:0005524(InterPro)
Lac9g2320 630 MobiDBLite consensus disorder prediction 606 621 - -
Lac9g2320 630 MobiDBLite consensus disorder prediction 285 310 - -
Lac9g2320 630 MobiDBLite consensus disorder prediction 606 630 - -
Lac9g2320 630 FunFam Leucine-rich repeat receptor-like protein kinase 28 138 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac1g1766 Lac-Chr1:39168843 Lac9g2320 Lac-Chr9:42535624 1.10E-190 dispersed
Lac3g0862 Lac-Chr3:6916549 Lac9g2320 Lac-Chr9:42535624 7.50E-137 dispersed
Lac5g2771 Lac-Chr5:46111174 Lac9g2320 Lac-Chr9:42535624 8.50E-47 dispersed
Lac5g2999 Lac-Chr5:47933678 Lac9g2320 Lac-Chr9:42535624 1.90E-121 dispersed
Lac8g1972 Lac-Chr8:38157274 Lac9g2320 Lac-Chr9:42535624 1.10E-84 dispersed
Lac8g2607 Lac-Chr8:43685682 Lac9g2320 Lac-Chr9:42535624 6.50E-58 dispersed
Lac9g1306 Lac-Chr9:30224507 Lac9g2320 Lac-Chr9:42535624 6.90E-38 dispersed
Lac9g2320 Lac-Chr9:42535624 Lac7g0496 Lac-Chr7:3976680 6.80E-47 dispersed
Lac9g2320 Lac-Chr9:42535624 Lac6g2971 Lac-Chr6:47280640 4.10E-145 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86452 PF00069 Pkinase 2.40E-37 CL0016 Lac PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac9g2320 - - - 0.0