Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lac9g2324 | ATGGATCTCCTCCTCCTGGAGAAGACTCTAATCGGCCTCTTCGTCGCGGTGGTTCTCGCCATTGCCATTTCCAAACTCCGCGGCAAGCGGTTCAAGCTTCCGCCGGGGCCGTTGCCGGTGCCGATCTTCGGTAACTGGCTCCAAGTCGGTGATGATTTGAACCACCGCAATCTGACGGATCTCGCCAAGAAATTCGGCGATATCTTCTTGCTTCGGATGGGACAGAGGAACCTCGTGGTGGTTTCCTCGCCGGAACTGGCCAAGGAAGTGCTCCATACTCAGGGAGTCGAGTTCGGATCTCGAACCAGAAACGTCGTCTTCGATATCTTCACCGGAAAAGGTCAGGATATGGTTTTCACCGTCTATGGCGAGCACTGGAGGAAAATGAGACGTATCATGACGGTTCCGTTTTTCACCAACAAAGTGGTCCAGCAATACCGTCACGGATGGGAGGCCGAGGCCGCAAGCGTCGTGGAGGACGTTAAGAAGAATCCAGACTCCGCGACGACTGGAATCGTTCTCCGACGGCGGTTGCAGCTTATGATGTACAACAACATGTACAGGATTATGTTCGATAGAAGATTCGAGAGTGAAGACGATCCTCTGTTCCTCAAACTCAGGGCTCTGAACGGAGAGAGGAGCCGATTGGCGCAGAGCTTCGATTACAATTATGGCGATTTCATCCCGATCTTGAGGCCGTTCTTGAGAGGTTATCTCAAAATCTGCAAGGAAGTCAAGGAAACAAGGCTGAAACTCTTCAAGGATTATTTCGTAGAGGAGAGGAAGAAACTGGCGAATACTAAGACCACGACGAACGAGGGATTGAAATGTGCGATTGATCACATATTGGATGCGCAACAGAAGGGAGAAATCAACGAAGACAATGTGCTTTACATTGTTGAGAACATTAACGTTGCAGCGATTGAAACAACATTGTGGTCAATCGAATGGGGAATTGCCGAACTGGTAAACCACCCTGAAATCCAAAGGAAGTTGAGGAATGAGCTCGACACCGTACTTGGACCTGGCGTCCCGATCACCGAGCCCGACACCTACAAGCTCCCTTACCTCCAAGCCGTGATCAAGGAGACCCTCCGCCTTCGCATGGCCATCCCCTTGCTCGTGCCCCACATGAACCTCCACGACGCCAAGCTCGCTGGCTACGACATTCCTGCCGAGAGCAAGATCTTAGTCAATGCCTGGTGGCTCGCCAACAACCCTGCCAACTGGAAGAACCCGGAAGAGTTCCGCCCCGAGAGGTTCTTGGAGGAGGAATCTAAGGTCGAGGCCAATGGCAACGATTTTCGATACCTTCCCTTCGGCGTCGGTCGACGAAGCTGCCCTGGCATCATCTTGGCTTTGCCGATCCTTGGCATTACAATTGGGCGTTTGGTTCAGAACTTTGAGCTCCTGCCTCCTCCTGGACAATCGAAGTTGGACACTTCAGAGAAAGGTGGGCAATTTAGCTTGCACATTTTGAAGCACTCCACCATTGTTGCTAAGCCAAGGGTTTTCTAG | 1518 | 51.84 | MDLLLLEKTLIGLFVAVVLAIAISKLRGKRFKLPPGPLPVPIFGNWLQVGDDLNHRNLTDLAKKFGDIFLLRMGQRNLVVVSSPELAKEVLHTQGVEFGSRTRNVVFDIFTGKGQDMVFTVYGEHWRKMRRIMTVPFFTNKVVQQYRHGWEAEAASVVEDVKKNPDSATTGIVLRRRLQLMMYNNMYRIMFDRRFESEDDPLFLKLRALNGERSRLAQSFDYNYGDFIPILRPFLRGYLKICKEVKETRLKLFKDYFVEERKKLANTKTTTNEGLKCAIDHILDAQQKGEINEDNVLYIVENINVAAIETTLWSIEWGIAELVNHPEIQRKLRNELDTVLGPGVPITEPDTYKLPYLQAVIKETLRLRMAIPLLVPHMNLHDAKLAGYDIPAESKILVNAWWLANNPANWKNPEEFRPERFLEEESKVEANGNDFRYLPFGVGRRSCPGIILALPILGITIGRLVQNFELLPPPGQSKLDTSEKGGQFSLHILKHSTIVAKPRVF | 505 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 9 | 42579470 | 42581810 | + | Lag0009811.1 | Lac9g2324 | 621250 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lac9g2324 | 505 | Pfam | Cytochrome P450 | 34 | 496 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac9g2324 | 505 | ProSitePatterns | Cytochrome P450 cysteine heme-iron ligand signature. | 440 | 449 | IPR017972 | GO:0005506(InterPro)|GO:0016705(InterPro) | |
| Lac9g2324 | 505 | PRINTS | P450 superfamily signature | 306 | 323 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac9g2324 | 505 | PRINTS | P450 superfamily signature | 359 | 370 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac9g2324 | 505 | PRINTS | P450 superfamily signature | 438 | 447 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac9g2324 | 505 | SUPERFAMILY | Cytochrome P450 | 34 | 503 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac9g2324 | 505 | CDD | CYP73 | 63 | 496 | - | - | |
| Lac9g2324 | 505 | PRINTS | E-class P450 group I signature | 315 | 341 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac9g2324 | 505 | PRINTS | E-class P450 group I signature | 295 | 312 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac9g2324 | 505 | PRINTS | E-class P450 group I signature | 358 | 376 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac9g2324 | 505 | PRINTS | E-class P450 group I signature | 181 | 199 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac9g2324 | 505 | PRINTS | E-class P450 group I signature | 62 | 81 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac9g2324 | 505 | PRINTS | E-class P450 group I signature | 86 | 107 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac9g2324 | 505 | PRINTS | E-class P450 group I signature | 399 | 423 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac9g2324 | 505 | PRINTS | E-class P450 group I signature | 437 | 447 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac9g2324 | 505 | PRINTS | E-class P450 group I signature | 447 | 470 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac9g2324 | 505 | Gene3D | Cytochrome P450 | 23 | 495 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac9g2324 | 505 | FunFam | Trans-cinnamate 4-monooxygenase | 23 | 497 | - | - | |
| Lac9g2324 | 505 | PANTHER | TRANS-CINNAMATE 4-MONOOXYGENASE | 1 | 503 | - | GO:0004497(PANTHER)|GO:0009808(PANTHER)|GO:0016710(PANTHER) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lac6g2209 | Lac-Chr6:38606283 | Lac9g2324 | Lac-Chr9:42579470 | 2.90E-184 | dispersed | |
| Lac6g2210 | Lac-Chr6:38619470 | Lac9g2324 | Lac-Chr9:42579470 | 8.80E-189 | dispersed | |
| Lac9g2324 | Lac-Chr9:42579470 | Lac10g0503 | Lac-Chr10:3855639 | 7.10E-71 | dispersed | |
| Lac7g2916 | Lac-Chr7:48199061 | Lac9g2324 | Lac-Chr9:42579470 | 2.60E-249 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lac9g2324 | K00487 | - | csv:101221846 | 970.689 |