Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac9g2327 ATGCAAGATCCAGGGCCATCAAACCCTATCCACACTCCGAATTCCAATCAAATTCCTCCACTGAATGTTGCAACGCCGCCGCAGAAGACTCACAAGCCGCCGCCGGTGGCAAATGCGACGGCGTCCTCGTCGATGTTTGCGAATGCGGGTGCCGGGAATGGCTCGTTTGTGCCTAGAGCTGGTTCTCATCATCGGAGGGCTCATTCGGAAGTTAGCTTCCGGTTGCCGGAGGACATGATGGATCTGTCCGGGTCGGATCCGTTCAATGGCGGCTCGTCGACGGCTAGTTTGGAGGAGATCGGATCGGAAGATGATCTGTTTTCGACCTACATTGATGTGAAGAAGCTTGGAGGTAATGGAGGAGGGAATTTCGCGGATCATAATGCCAATGGCGGAAGTGAAGGCGTTGGTGGTAGTGAGGGAGAGAAGACTTCGAAGCCAAGGCATCGGCATAGCGTTTCGGTGGACGGAACGACATCGTCGTCGAGTATGTTTGGGGAGGTTATGGAAGCGAAGAAAGCTATGCCTCCTGATAAGTTGGCTGAGCTTTGGACCAGTGACCCCAAACGCGCCAAAAGGATATTGGCTAATCGACAGTCTGCTGCTCGATCGAAAGAGAGGAAGGCACGATATATACAAGAGTTGGAGCGCAAAGTGCAGACTCTTCAAACAGAAGCAACTACTCTATCAGCACAATTAACTTTGTTTCAGCGAGATACAACGGGTCTTAGTACTGAGAATACAGAGCTTAAGCTTCGGTTGCAGGCTATGGAGCAACAAGCTCAATTGCGTGATGCTCTGAACGAAGCATTAAAGAAGGAAGTCGAGCGGCTTAAAATCGCTACCGGGGAAATGATGAGCCCTTCTGAGTCGTTTAACCTGGGAATGCATCACATGGCATATGCCCCATCGTCTTTCATTCAACTTTCACAACAACCAGGATCTATGGGCCATCAGAATATGCAAATGCCACCATATAGTCATTCCCCATCTAACATGTCTAGCCACCCTCTACATCCATCAGATTCTCATTCTCTCTCAGAGGTTCTGCAGAGCGATCCTCTCGGTCGATTACAGGGTCTCGACATCAGTAGTAAAGGATCGTCGCTTGTGAAATCTGAGGGCCCCTCACTCTCTGCTAGTGAGAGCAGTACTACCTTTTGA 1164 50.17 MQDPGPSNPIHTPNSNQIPPLNVATPPQKTHKPPPVANATASSSMFANAGAGNGSFVPRAGSHHRRAHSEVSFRLPEDMMDLSGSDPFNGGSSTASLEEIGSEDDLFSTYIDVKKLGGNGGGNFADHNANGGSEGVGGSEGEKTSKPRHRHSVSVDGTTSSSSMFGEVMEAKKAMPPDKLAELWTSDPKRAKRILANRQSAARSKERKARYIQELERKVQTLQTEATTLSAQLTLFQRDTTGLSTENTELKLRLQAMEQQAQLRDALNEALKKEVERLKIATGEMMSPSESFNLGMHHMAYAPSSFIQLSQQPGSMGHQNMQMPPYSHSPSNMSSHPLHPSDSHSLSEVLQSDPLGRLQGLDISSKGSSLVKSEGPSLSASESSTTF 387
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 42613932 42616544 + Lag0009814.1 Lac9g2327 621253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac9g2327 387 Coils Coil 253 284 - -
Lac9g2327 387 Gene3D - 188 241 - -
Lac9g2327 387 FunFam probable transcription factor PosF21 188 241 - -
Lac9g2327 387 Pfam bZIP transcription factor 189 237 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac9g2327 387 CDD bZIP_plant_RF2 190 239 IPR044759 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac9g2327 387 MobiDBLite consensus disorder prediction 362 387 - -
Lac9g2327 387 MobiDBLite consensus disorder prediction 117 163 - -
Lac9g2327 387 PANTHER TRANSCRIPTION FACTOR POSF21-RELATED 33 339 - GO:0003700(PANTHER)|GO:0005634(PANTHER)
Lac9g2327 387 MobiDBLite consensus disorder prediction 310 352 - -
Lac9g2327 387 Coils Coil 205 232 - -
Lac9g2327 387 MobiDBLite consensus disorder prediction 1 24 - -
Lac9g2327 387 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 187 250 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac9g2327 387 SMART brlzneu 185 249 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac9g2327 387 MobiDBLite consensus disorder prediction 35 50 - -
Lac9g2327 387 SUPERFAMILY Leucine zipper domain 189 240 IPR046347 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac9g2327 387 MobiDBLite consensus disorder prediction 1 96 - -
Lac9g2327 387 MobiDBLite consensus disorder prediction 310 387 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac13g1241 Lac-Chr13:11135474 Lac9g2327 Lac-Chr9:42613932 2.90E-76 dispersed
Lac8g1685 Lac-Chr8:34972939 Lac9g2327 Lac-Chr9:42613932 1.10E-35 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
24486 PF00170 bZIP_1 1.40E-08 CL0018 Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac9g2327 - - - 0.0