Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac9g2336 ATGCCGGAGATCGAACCCGCCTCCACCGACAACCATGCCCTCTTCGGCAAGTACGAGCTCGGCAAGGTCCTCGGCTGCGGCGCCTTTGCCAAGGTCTACCATGCCCGCGACCTCCGATCCGGCCAGAGCGTCGCCATCAAAGTCATCAACAAGAAGAAGATCAATGGCACCACTCTCATGTCCAACATCAAGCGCGAAATCTCCATCATGCGCCGTCTCCGCCACCCTCACATCGTCAAACTCCATGAGGTTCTTGCAACCAGATCCAAGATCTATTTCGTCATGGACTTCGTCAAAGGCGGCGAGCTCTTCGCCAAGGTCGCCAAGGGCCGATTCAGCGAGGATTTGAGCAGGAGATTCTTCCAGCAGTTGATCTCCGCCGTTGGATTCTGCCACGCGCGTGGGATCTACCACCGCGATCTGAAGCCGGAGAATCTCCTCGTCGACGAGAATGGGAATCTCAAGGTCTCGGACTTCGGTCTCAGTGCGGTAACGGACCAGATCCGCTCCGATGGCCTTCTGCACACTCTCTGTGGAACTCCAGCGTATGTCGCGCCGGAGATTTTGTCGAAGAAGGGCTACGACGGTGCGAAAGTCGATGTGTGGTCCTGTGGTGTGATTCTCTTCGTGTTGAACGCCGGCTACCTTCCGTTCAACGATCCGAATCTCATGGCGATGTACAAGAAGATTTACAAGGGGGAATATCGGTGCCCTAAATGGATGTCGCCGGACCTCAAGCGGTTTTTATCGCGACTTCTCGATACGAATCCACAAACGAGGATCACCATCGATGAGATTCTGAGGGATCCGTGGTTCAGAAAAGGAGCAACTAAGGAGATCAATTTCTATGATGATTACGAAATGAAATTCGAAGAGAAGGATGAATCTCAATCGACGAATTTGAACGCATTCGACATTATATCGTTCTCATCAGGACTGGATCTGTCCGGTTTGTTCGACAACTCGCACAACGCGGTGGAGGACAGTGAGCGATTCGTATCGGCGGAGTCGCCGGAGAAGATCATGGAGAAAGTGGAGGAGTTCGCAAGGGCTGAGAATCTGAAGGTGAGGAAACAGAAGGAATTTGGAGTCGAATTGGATGGCCAGAATCGTAATTTGGTCATCGGAATCGAAATTTTCCGGTTAACCGACGGATTGGCGGTGGTGGAAGCGAGAAGAAGAAGTGGAGATTCAGAATCGTACAAGGAATTGTTGAAGAAGAAGCTGAAAGGTCATCTCACCGGCAACGAAGCTTCGACGTCGTCGTCGTCGACGTCCCGACAATATTATTCCGGCAACCAGAACCAGTGA 1311 52.25 MPEIEPASTDNHALFGKYELGKVLGCGAFAKVYHARDLRSGQSVAIKVINKKKINGTTLMSNIKREISIMRRLRHPHIVKLHEVLATRSKIYFVMDFVKGGELFAKVAKGRFSEDLSRRFFQQLISAVGFCHARGIYHRDLKPENLLVDENGNLKVSDFGLSAVTDQIRSDGLLHTLCGTPAYVAPEILSKKGYDGAKVDVWSCGVILFVLNAGYLPFNDPNLMAMYKKIYKGEYRCPKWMSPDLKRFLSRLLDTNPQTRITIDEILRDPWFRKGATKEINFYDDYEMKFEEKDESQSTNLNAFDIISFSSGLDLSGLFDNSHNAVEDSERFVSAESPEKIMEKVEEFARAENLKVRKQKEFGVELDGQNRNLVIGIEIFRLTDGLAVVEARRRSGDSESYKELLKKKLKGHLTGNEASTSSSSTSRQYYSGNQNQ 436
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 42677221 42678531 + Lag0009823.1 Lac9g2336 621262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac9g2336 436 ProSiteProfiles NAF domain profile. 296 320 IPR018451 GO:0007165(InterPro)
Lac9g2336 436 Gene3D Transferase(Phosphotransferase) domain 1 100 278 - -
Lac9g2336 436 SUPERFAMILY Protein kinase-like (PK-like) 15 281 IPR011009 -
Lac9g2336 436 SMART serkin_6 18 272 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac9g2336 436 CDD CIPK_C 302 401 - -
Lac9g2336 436 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 10 406 - GO:0004674(PANTHER)|GO:0006468(PANTHER)|GO:0007165(PANTHER)
Lac9g2336 436 ProSitePatterns Serine/Threonine protein kinases active-site signature. 136 148 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac9g2336 436 ProSiteProfiles Protein kinase domain profile. 18 272 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac9g2336 436 FunFam Non-specific serine/threonine protein kinase 296 416 - -
Lac9g2336 436 MobiDBLite consensus disorder prediction 414 436 - -
Lac9g2336 436 ProSitePatterns Protein kinases ATP-binding region signature. 24 47 IPR017441 GO:0005524(InterPro)
Lac9g2336 436 FunFam Non-specific serine/threonine protein kinase 8 301 - -
Lac9g2336 436 Gene3D Phosphorylase Kinase; domain 1 4 99 - -
Lac9g2336 436 MobiDBLite consensus disorder prediction 411 436 - -
Lac9g2336 436 Pfam Protein kinase domain 18 272 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac9g2336 436 Pfam NAF domain 299 358 IPR004041 GO:0007165(InterPro)
Lac9g2336 436 Gene3D Kinase associated domain 1, KA1 297 415 - -
Lac9g2336 436 FunFam Non-specific serine/threonine protein kinase 9 97 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac1g1792 Lac-Chr1:39464360 Lac9g2336 Lac-Chr9:42677221 5.00E-150 dispersed
Lac7g0679 Lac-Chr7:5439043 Lac9g2336 Lac-Chr9:42677221 1.20E-95 dispersed
Lac9g2336 Lac-Chr9:42677221 Lac9g2932 Lac-Chr9:47112424 1.30E-105 dispersed
Lac9g2336 Lac-Chr9:42677221 Lac9g2337 Lac-Chr9:42681407 2.60E-114 tandem
Lac8g2723 Lac-Chr8:44674473 Lac9g2336 Lac-Chr9:42677221 5.30E-24 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86454 PF00069 Pkinase 7.50E-72 CL0016 Lac PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac9g2336 - - - 0.0