Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Lac9g2337 ATGGATAATAAGCCGAGTGTGATGGTTCAAAAGTATGAGTTAGGGAGATTACTCGGCCAAGGAACCTTCGCAAAGGTATATTATGCAAGGAATACAGGAGCTAATCAAAGTGTGGCCATTAAGGTGATTGATAAAGAAAAGATCACGAAGGCTTCGCTAATAGATCAGATTAAGCGTGAAATATCTATTATGAGACTCGTTAGACATCCCAATATTATACATCTGTATGAGGTTATGGCCACCAAGACTAAGATCTACTTTGTCTTGGAATATGCTAAAGGTGGTGAGCTCTTTGACAAGGTCGCTAAAGGGAGGCTGAAGGAGGACGTTGCTTGGAAATACTTCTATCAGTTAATCAATGCTGTTGATTTTTGTCACAGTAGGGGAGTATATCACCGTGATATAAAGCCGGAGAACCTACTTCTTGATGAAAATGAGAATCTTAAGGTGTCTGATTTTGGTTTAAGTGCTTTAGCCGAGTCCAAGCGTCAAGATGGGTTGCTACACACTACTTGTGGTACACCAGCTTATGTTGCCCCTGAAGTCATCAATAGGAAGGGTTATGATGGTGCAAAAGCTGATATCTGGTCTTGTGGAGTAGTTTTGTTTGTCTTATTGGCAGGTTATCTCCCATTCCACGATTCGAATTTGATGGAGATGTATAGGAAGATTGGAAGAGGGGATTACAAATGTCCTAGTTGGTTCCCTCGTGAAGCGCGGAGGCTGCTAAGTAGGATGCTTGATCCAAACCCCATTACTAGGACTTCCATAGCAATGATAAGACAAAGTTCTTGGTTCAGAAAAGGATTGAGGTCTAAGATGTTAAGAAGTGGAACAGAAAGTGATGCTATAGCGACTGAGGATGCAGCAGGAGCATCTGAGAGTAGTGTGCCAACAGATGGAAATCGAGAGCCAGATAGACCTCCGACTTTGAATGCTTTCGATATCATCTCCCTTTCTGCCGGATTCAATCTATCCAGTTTATTTGAAGACAATTCAAAGAAGAAAGAAACATTGTTCACTTGTAGAAAACCAGCCTCTGTCATCCTCTCAAAGCTAGAAGAAATTGCTAAACTTCTCCGATTTCGAGTGCAGAAGAAGGAAGCAGGCCTACTGAAGTTTGAGGCACTAACAGAGGGTAAAAAGGGCGCATTGTCCATTGATACAGAAATCTTTGAAGTTACTCCATCCTTTTATTTGGTGGAGATGAAGAAATCTAATGGGGACACATTGGAATATCAGAAGATATTGAAAGAGGACATAAGGCCAGCTCTACAGGACATTGTATGGGTTTGGCGAGGAGAGCACGAGCAGCAGCAACAACAGCCTCATCCTCAGCCTCAGCCTCTCCAACCGCAGGATCAGGATCGAGATCGGGATCCATATCTGGGGCAAGAGGGCGCGTCACAACAGCAGTAG 1419 43.13 MDNKPSVMVQKYELGRLLGQGTFAKVYYARNTGANQSVAIKVIDKEKITKASLIDQIKREISIMRLVRHPNIIHLYEVMATKTKIYFVLEYAKGGELFDKVAKGRLKEDVAWKYFYQLINAVDFCHSRGVYHRDIKPENLLLDENENLKVSDFGLSALAESKRQDGLLHTTCGTPAYVAPEVINRKGYDGAKADIWSCGVVLFVLLAGYLPFHDSNLMEMYRKIGRGDYKCPSWFPREARRLLSRMLDPNPITRTSIAMIRQSSWFRKGLRSKMLRSGTESDAIATEDAAGASESSVPTDGNREPDRPPTLNAFDIISLSAGFNLSSLFEDNSKKKETLFTCRKPASVILSKLEEIAKLLRFRVQKKEAGLLKFEALTEGKKGALSIDTEIFEVTPSFYLVEMKKSNGDTLEYQKILKEDIRPALQDIVWVWRGEHEQQQQQPHPQPQPLQPQDQDRDRDPYLGQEGASQQQ 472
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
9 42681407 42682825 - Lag0009824.1 Lac9g2337 621263
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Lac9g2337 472 MobiDBLite consensus disorder prediction 435 472 - -
Lac9g2337 472 FunFam Non-specific serine/threonine protein kinase 2 292 - -
Lac9g2337 472 FunFam Non-specific serine/threonine protein kinase 306 430 - -
Lac9g2337 472 ProSiteProfiles NAF domain profile. 306 330 IPR018451 GO:0007165(InterPro)
Lac9g2337 472 CDD CIPK_C 312 426 - -
Lac9g2337 472 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 3 419 - GO:0004674(PANTHER)|GO:0006468(PANTHER)|GO:0007165(PANTHER)
Lac9g2337 472 MobiDBLite consensus disorder prediction 285 307 - -
Lac9g2337 472 SUPERFAMILY Protein kinase-like (PK-like) 9 267 IPR011009 -
Lac9g2337 472 Gene3D Transferase(Phosphotransferase) domain 1 3 305 - -
Lac9g2337 472 ProSitePatterns Protein kinases ATP-binding region signature. 18 41 IPR017441 GO:0005524(InterPro)
Lac9g2337 472 FunFam Non-specific serine/threonine protein kinase 3 91 - -
Lac9g2337 472 ProSitePatterns Serine/Threonine protein kinases active-site signature. 130 142 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac9g2337 472 Pfam Protein kinase domain 12 266 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac9g2337 472 SMART serkin_6 12 266 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac9g2337 472 Pfam NAF domain 308 366 IPR004041 GO:0007165(InterPro)
Lac9g2337 472 CDD STKc_SnRK3 11 265 - -
Lac9g2337 472 ProSiteProfiles Protein kinase domain profile. 12 266 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac9g2337 472 Gene3D Kinase associated domain 1, KA1 306 431 - -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac1g1796 Lac-Chr1:39560526 Lac9g2337 Lac-Chr9:42681407 9.50E-176 dispersed
Lac2g0548 Lac-Chr2:4094340 Lac9g2337 Lac-Chr9:42681407 8.20E-140 dispersed
Lac3g0204 Lac-Chr3:1447243 Lac9g2337 Lac-Chr9:42681407 1.00E-120 dispersed
Lac6g2847 Lac-Chr6:46079680 Lac9g2337 Lac-Chr9:42681407 1.60E-143 dispersed
Lac9g2337 Lac-Chr9:42681407 Lac9g2932 Lac-Chr9:47112424 6.10E-125 dispersed
Lac9g2336 Lac-Chr9:42677221 Lac9g2337 Lac-Chr9:42681407 2.60E-114 tandem
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86455 PF00069 Pkinase 1.50E-74 CL0016 Lac PK
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac9g2337 - - - 0.0