Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lac9g2337 | ATGGATAATAAGCCGAGTGTGATGGTTCAAAAGTATGAGTTAGGGAGATTACTCGGCCAAGGAACCTTCGCAAAGGTATATTATGCAAGGAATACAGGAGCTAATCAAAGTGTGGCCATTAAGGTGATTGATAAAGAAAAGATCACGAAGGCTTCGCTAATAGATCAGATTAAGCGTGAAATATCTATTATGAGACTCGTTAGACATCCCAATATTATACATCTGTATGAGGTTATGGCCACCAAGACTAAGATCTACTTTGTCTTGGAATATGCTAAAGGTGGTGAGCTCTTTGACAAGGTCGCTAAAGGGAGGCTGAAGGAGGACGTTGCTTGGAAATACTTCTATCAGTTAATCAATGCTGTTGATTTTTGTCACAGTAGGGGAGTATATCACCGTGATATAAAGCCGGAGAACCTACTTCTTGATGAAAATGAGAATCTTAAGGTGTCTGATTTTGGTTTAAGTGCTTTAGCCGAGTCCAAGCGTCAAGATGGGTTGCTACACACTACTTGTGGTACACCAGCTTATGTTGCCCCTGAAGTCATCAATAGGAAGGGTTATGATGGTGCAAAAGCTGATATCTGGTCTTGTGGAGTAGTTTTGTTTGTCTTATTGGCAGGTTATCTCCCATTCCACGATTCGAATTTGATGGAGATGTATAGGAAGATTGGAAGAGGGGATTACAAATGTCCTAGTTGGTTCCCTCGTGAAGCGCGGAGGCTGCTAAGTAGGATGCTTGATCCAAACCCCATTACTAGGACTTCCATAGCAATGATAAGACAAAGTTCTTGGTTCAGAAAAGGATTGAGGTCTAAGATGTTAAGAAGTGGAACAGAAAGTGATGCTATAGCGACTGAGGATGCAGCAGGAGCATCTGAGAGTAGTGTGCCAACAGATGGAAATCGAGAGCCAGATAGACCTCCGACTTTGAATGCTTTCGATATCATCTCCCTTTCTGCCGGATTCAATCTATCCAGTTTATTTGAAGACAATTCAAAGAAGAAAGAAACATTGTTCACTTGTAGAAAACCAGCCTCTGTCATCCTCTCAAAGCTAGAAGAAATTGCTAAACTTCTCCGATTTCGAGTGCAGAAGAAGGAAGCAGGCCTACTGAAGTTTGAGGCACTAACAGAGGGTAAAAAGGGCGCATTGTCCATTGATACAGAAATCTTTGAAGTTACTCCATCCTTTTATTTGGTGGAGATGAAGAAATCTAATGGGGACACATTGGAATATCAGAAGATATTGAAAGAGGACATAAGGCCAGCTCTACAGGACATTGTATGGGTTTGGCGAGGAGAGCACGAGCAGCAGCAACAACAGCCTCATCCTCAGCCTCAGCCTCTCCAACCGCAGGATCAGGATCGAGATCGGGATCCATATCTGGGGCAAGAGGGCGCGTCACAACAGCAGTAG | 1419 | 43.13 | MDNKPSVMVQKYELGRLLGQGTFAKVYYARNTGANQSVAIKVIDKEKITKASLIDQIKREISIMRLVRHPNIIHLYEVMATKTKIYFVLEYAKGGELFDKVAKGRLKEDVAWKYFYQLINAVDFCHSRGVYHRDIKPENLLLDENENLKVSDFGLSALAESKRQDGLLHTTCGTPAYVAPEVINRKGYDGAKADIWSCGVVLFVLLAGYLPFHDSNLMEMYRKIGRGDYKCPSWFPREARRLLSRMLDPNPITRTSIAMIRQSSWFRKGLRSKMLRSGTESDAIATEDAAGASESSVPTDGNREPDRPPTLNAFDIISLSAGFNLSSLFEDNSKKKETLFTCRKPASVILSKLEEIAKLLRFRVQKKEAGLLKFEALTEGKKGALSIDTEIFEVTPSFYLVEMKKSNGDTLEYQKILKEDIRPALQDIVWVWRGEHEQQQQQPHPQPQPLQPQDQDRDRDPYLGQEGASQQQ | 472 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 9 | 42681407 | 42682825 | - | Lag0009824.1 | Lac9g2337 | 621263 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lac9g2337 | 472 | MobiDBLite | consensus disorder prediction | 435 | 472 | - | - | |
| Lac9g2337 | 472 | FunFam | Non-specific serine/threonine protein kinase | 2 | 292 | - | - | |
| Lac9g2337 | 472 | FunFam | Non-specific serine/threonine protein kinase | 306 | 430 | - | - | |
| Lac9g2337 | 472 | ProSiteProfiles | NAF domain profile. | 306 | 330 | IPR018451 | GO:0007165(InterPro) | |
| Lac9g2337 | 472 | CDD | CIPK_C | 312 | 426 | - | - | |
| Lac9g2337 | 472 | PANTHER | CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED | 3 | 419 | - | GO:0004674(PANTHER)|GO:0006468(PANTHER)|GO:0007165(PANTHER) | |
| Lac9g2337 | 472 | MobiDBLite | consensus disorder prediction | 285 | 307 | - | - | |
| Lac9g2337 | 472 | SUPERFAMILY | Protein kinase-like (PK-like) | 9 | 267 | IPR011009 | - | |
| Lac9g2337 | 472 | Gene3D | Transferase(Phosphotransferase) domain 1 | 3 | 305 | - | - | |
| Lac9g2337 | 472 | ProSitePatterns | Protein kinases ATP-binding region signature. | 18 | 41 | IPR017441 | GO:0005524(InterPro) | |
| Lac9g2337 | 472 | FunFam | Non-specific serine/threonine protein kinase | 3 | 91 | - | - | |
| Lac9g2337 | 472 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 130 | 142 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
| Lac9g2337 | 472 | Pfam | Protein kinase domain | 12 | 266 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
| Lac9g2337 | 472 | SMART | serkin_6 | 12 | 266 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
| Lac9g2337 | 472 | Pfam | NAF domain | 308 | 366 | IPR004041 | GO:0007165(InterPro) | |
| Lac9g2337 | 472 | CDD | STKc_SnRK3 | 11 | 265 | - | - | |
| Lac9g2337 | 472 | ProSiteProfiles | Protein kinase domain profile. | 12 | 266 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
| Lac9g2337 | 472 | Gene3D | Kinase associated domain 1, KA1 | 306 | 431 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lac1g1796 | Lac-Chr1:39560526 | Lac9g2337 | Lac-Chr9:42681407 | 9.50E-176 | dispersed | |
| Lac2g0548 | Lac-Chr2:4094340 | Lac9g2337 | Lac-Chr9:42681407 | 8.20E-140 | dispersed | |
| Lac3g0204 | Lac-Chr3:1447243 | Lac9g2337 | Lac-Chr9:42681407 | 1.00E-120 | dispersed | |
| Lac6g2847 | Lac-Chr6:46079680 | Lac9g2337 | Lac-Chr9:42681407 | 1.60E-143 | dispersed | |
| Lac9g2337 | Lac-Chr9:42681407 | Lac9g2932 | Lac-Chr9:47112424 | 6.10E-125 | dispersed | |
| Lac9g2336 | Lac-Chr9:42677221 | Lac9g2337 | Lac-Chr9:42681407 | 2.60E-114 | tandem |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 86455 | PF00069 | Pkinase | 1.50E-74 | CL0016 | Lac | PK |
Pathway information