Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac9g2340 ATGGCGATTACTACTAAAAATGTGGTGATTCTAGCTTTAGCGTTGCACCTCTTCCTAATTTTCATGGGCACCTCTTCCGCCCAACTCTCCACCACCTTCTACTCCAAGACCTGTCCCAAGCTCCTCTCCACGGTCCGCTCGGGCGTCCAATCCGCCATCGCTAAGGAAACCCGCATCGGGGCTTCCCTCCTCCGCCTGCATTTTCATGATTGCTTTGTTAACGGATGTGATGGGTCAATTCTTTTGGCGGACACTCCATCTTTGAGAGGAGAGCAAACAGCTCCTCCAAACAATAGGTCCGTAAGAGGGTTTAATGTGGTAGAAGCTATGAAGAGGAGCGTGGAAAAAGTTTGCCCTGGTGTAGTCTCATGTGCTGATATTTTGACTCTAACTGCTCGTGACTCTGTCGTGATTTTGGGAGGGCCATATTGGGAGGTGAAACTAGGAAGAAGAGATTCAAAAACAGCTAGCTTCTCTGCAGCCAGCAGTGGCGTAATCCCTCCACCGACTTCAACCCTCACCAACCTCATCAATCGATTCAGTGCCTTGGGCCTCTCTGCCAGAGACATGGTTGCCTTGTCTGGGGCCCACACAATAGGCCTAGCAAGGTGCACAACCTTTAGGAACCGCATATACAATGAGACCAACATAGATGCTTCCTTTGCCAAGCTAAGACAGAGCAATTGTCCGAGAAGTGGAGGAGATGACAATCTTGCCCCTCTTGACGTTGCCACGCCAAAGCTTTTTGACAACCTTTACTTCAAGAACCTTTTGAACAAGAAGGGCTTACTCCACTCTGACCAGGTCCTCCACAATGGTGGATCCACTGATTCGTTGGTTGAATTGTACAGTAAAAATGATAAGACTTTCGATTCTGACTTTGTGGCAGCAATGATTAGAATGGGAGACATCCGACCACTCACAGGATCTCAGGGCGAGATTAGAAAGAAATCGTTATGTGATATTTTGTGCAGGATGGGCCCCGGTGAATCGACCCAGAAGCTAGAAGAGGCCAAGGTGAAGAAGACCGAAGGGCCGGAGCCCAACCCGGCCCTCCAGACATGA 1065 49.39 MAITTKNVVILALALHLFLIFMGTSSAQLSTTFYSKTCPKLLSTVRSGVQSAIAKETRIGASLLRLHFHDCFVNGCDGSILLADTPSLRGEQTAPPNNRSVRGFNVVEAMKRSVEKVCPGVVSCADILTLTARDSVVILGGPYWEVKLGRRDSKTASFSAASSGVIPPPTSTLTNLINRFSALGLSARDMVALSGAHTIGLARCTTFRNRIYNETNIDASFAKLRQSNCPRSGGDDNLAPLDVATPKLFDNLYFKNLLNKKGLLHSDQVLHNGGSTDSLVELYSKNDKTFDSDFVAAMIRMGDIRPLTGSQGEIRKKSLCDILCRMGPGESTQKLEEAKVKKTEGPEPNPALQT 354
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 42696952 42698914 - Lag0009827.1 Lac9g2340 621266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac9g2340 354 PRINTS Plant peroxidase signature 38 57 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac9g2340 354 PRINTS Plant peroxidase signature 256 273 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac9g2340 354 PRINTS Plant peroxidase signature 62 82 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac9g2340 354 PRINTS Plant peroxidase signature 240 255 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac9g2340 354 PRINTS Plant peroxidase signature 121 131 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac9g2340 354 PRINTS Plant peroxidase signature 102 115 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac9g2340 354 PRINTS Plant peroxidase signature 188 200 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac9g2340 354 PRINTS Plant peroxidase signature 296 309 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac9g2340 354 PRINTS Plant peroxidase signature 140 155 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac9g2340 354 CDD secretory_peroxidase 28 325 IPR033905 GO:0004601(InterPro)|GO:0042744(InterPro)
Lac9g2340 354 ProSitePatterns Peroxidases proximal heme-ligand signature. 189 199 IPR019793 -
Lac9g2340 354 Pfam Peroxidase 45 286 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac9g2340 354 ProSitePatterns Peroxidases active site signature. 60 71 IPR019794 GO:0004601(InterPro)
Lac9g2340 354 MobiDBLite consensus disorder prediction 332 354 - -
Lac9g2340 354 Gene3D Peroxidase, domain 2 167 301 - -
Lac9g2340 354 ProSiteProfiles Plant heme peroxidase family profile. 28 316 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac9g2340 354 PRINTS Haem peroxidase superfamily signature 122 139 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac9g2340 354 PRINTS Haem peroxidase superfamily signature 242 257 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac9g2340 354 PRINTS Haem peroxidase superfamily signature 140 152 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac9g2340 354 PRINTS Haem peroxidase superfamily signature 189 204 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac9g2340 354 PRINTS Haem peroxidase superfamily signature 60 74 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac9g2340 354 PANTHER PEROXIDASE 72-RELATED 16 317 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac9g2340 354 SUPERFAMILY Heme-dependent peroxidases 28 317 IPR010255 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac9g2340 354 Gene3D - 32 317 - -
Lac9g2340 354 FunFam Peroxidase 167 301 - -
Lac9g2340 354 FunFam Peroxidase 32 174 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac8g2854 Lac-Chr8:45713778 Lac9g2340 Lac-Chr9:42696952 4.60E-44 dispersed
Lac8g2856 Lac-Chr8:45719962 Lac9g2340 Lac-Chr9:42696952 6.20E-105 dispersed
Lac9g2340 Lac-Chr9:42696952 Lac9g2343 Lac-Chr9:42719269 3.40E-128 dispersed
Lac9g2340 Lac-Chr9:42696952 Lac9g2342 Lac-Chr9:42715090 2.50E-131 proximal
Lac12g1909 Lac-Chr12:35660724 Lac9g2340 Lac-Chr9:42696952 2.40E-08 transposed
Lac7g2901 Lac-Chr7:48102298 Lac9g2340 Lac-Chr9:42696952 7.10E-88 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac9g2340 K00430 - csv:101207371 512.686