Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac9g2343 ATGGCGATTACAGCTTCTTATTCCAACAAAATGGCTGTGGCTTTAGCATTAGCCTTCTTGGCAATGTTCATGGGGAGCTCCTCAGCTCACCTCTCCCCCAACTTCTACTACAAGAGCTGCCCCCAGCTCCTCCGCATCGTTAGAGCCGGTGTTCGGTCCGCCGTCGCCAAGGAACCTCGCATGGGCGCTTCCCTTCTCCGTCTCCACTTTCACGATTGCTTCGTTAACGGTTGCGATGGCTCCATCCTTCTGGAAGATACTCCTACGTTTAGAGGAGAACAAACAGCAGCTCCCAACAATAGATCCGTCAGAGGGTTCAACGTGATTGAGAGTATAAAGAGAAATATAGAAAAAGTCTGTCCCGACGTTGTTTCTTGTGCTGATATTCTGACTCTTTCTGCTCGTGACTCCGTCGCAGCGTTGGGAGGGCCAAGTTGGAGGGTGAAATTAGGAAGAAGAGATTCAAAAACAGCGAGCTTCTCCGCCGTGACCGGTGCCATTCCTCCGCCAACCTCCACCCTCAACACTCTCATCAATCGGTTCAACACCAAAGGCCTCTCCCCTCGAGACTTGGTTGCTTTATCAGGGGCGCACACGATCGGACAAGCAAGGTGTTTGTTTTTCAAGAACCGAATATACAACGAGACCAACATCGAGAAGTGGTTTGCTAAGGAGAGACAGAGGACCTGTCCGAGAAATGGAGGAGACGACAATCGTGCTCCTCTGGACTTCAGAACTCCGAAGCTTTTTGACAATTACTACTACAAGAACCTTGTGGAGAAAAAGGCCTTGCTCCGCTCCGACCAGGTGCTGCACGATGGTGGATCCACTGATTCTTTGGTCGAACTCTACGGCCGCGACAGTGATGCCTTCGAGTCTGACTTTGTGTCAGCTATGATCAAGATGGGCAATATCGAACTACTCACTGGATCGCAAGGTGAGATTCGAAAGGTTTGCAGCCGACCCAACTAA 972 50.62 MAITASYSNKMAVALALAFLAMFMGSSSAHLSPNFYYKSCPQLLRIVRAGVRSAVAKEPRMGASLLRLHFHDCFVNGCDGSILLEDTPTFRGEQTAAPNNRSVRGFNVIESIKRNIEKVCPDVVSCADILTLSARDSVAALGGPSWRVKLGRRDSKTASFSAVTGAIPPPTSTLNTLINRFNTKGLSPRDLVALSGAHTIGQARCLFFKNRIYNETNIEKWFAKERQRTCPRNGGDDNRAPLDFRTPKLFDNYYYKNLVEKKALLRSDQVLHDGGSTDSLVELYGRDSDAFESDFVSAMIKMGNIELLTGSQGEIRKVCSRPN 323
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 42719269 42720622 - Lag0009830.1 Lac9g2343 621269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac9g2343 323 PANTHER PEROXIDASE 72-RELATED 18 321 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac9g2343 323 CDD secretory_peroxidase 30 321 IPR033905 GO:0004601(InterPro)|GO:0042744(InterPro)
Lac9g2343 323 SUPERFAMILY Heme-dependent peroxidases 31 323 IPR010255 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac9g2343 323 PRINTS Haem peroxidase superfamily signature 62 76 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac9g2343 323 PRINTS Haem peroxidase superfamily signature 124 141 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac9g2343 323 PRINTS Haem peroxidase superfamily signature 142 154 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac9g2343 323 PRINTS Haem peroxidase superfamily signature 243 258 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac9g2343 323 PRINTS Haem peroxidase superfamily signature 190 205 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac9g2343 323 ProSiteProfiles Plant heme peroxidase family profile. 30 323 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac9g2343 323 ProSitePatterns Peroxidases proximal heme-ligand signature. 190 200 IPR019793 -
Lac9g2343 323 ProSitePatterns Peroxidases active site signature. 62 73 IPR019794 GO:0004601(InterPro)
Lac9g2343 323 FunFam Peroxidase 168 302 - -
Lac9g2343 323 PRINTS Plant peroxidase signature 64 84 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac9g2343 323 PRINTS Plant peroxidase signature 123 133 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac9g2343 323 PRINTS Plant peroxidase signature 297 310 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac9g2343 323 PRINTS Plant peroxidase signature 189 201 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac9g2343 323 PRINTS Plant peroxidase signature 241 256 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac9g2343 323 PRINTS Plant peroxidase signature 40 59 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac9g2343 323 PRINTS Plant peroxidase signature 142 157 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac9g2343 323 PRINTS Plant peroxidase signature 104 117 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac9g2343 323 PRINTS Plant peroxidase signature 257 274 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac9g2343 323 Gene3D - 34 320 - -
Lac9g2343 323 Gene3D Peroxidase, domain 2 168 302 - -
Lac9g2343 323 FunFam Peroxidase 34 176 - -
Lac9g2343 323 Pfam Peroxidase 47 286 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac9g2340 Lac-Chr9:42696952 Lac9g2343 Lac-Chr9:42719269 3.40E-128 dispersed
Lac9g2343 Lac-Chr9:42719269 Lac9g2346 Lac-Chr9:42737652 1.10E-82 dispersed
Lac9g2342 Lac-Chr9:42715090 Lac9g2343 Lac-Chr9:42719269 9.50E-170 tandem
Lac9g2343 Lac-Chr9:42719269 Lac9g2344 Lac-Chr9:42723202 1.30E-150 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac9g2343 K00430 - csv:101204245 551.977