Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac9g2344 ATGGGGATTTCAGCTTGTTCTTCTAACAAAATGGCTTTGGCTTTAGCATTAGCCTTATTCTTATTGGCAATGTTCATGGGCAGCTCCTCAGCTCAGCTCTCTCCCAACTTCTACTATGATAGCTGCCCCAAGCTCCTCGACACCGTTAGAGCCGGTATTCAATCCGCCGTGGCTAAGGAAGCTCGCATGGGCGCTTCCCTTCTCCGCCTCCACTTTCATGACTGCTTTGTTAACGGATGTGATGGATCAATTCTTCTAGAAGATACTCCTACGTTTACAGGAGAACAAACTGCTGGTCCCAATGACCAATCCATTAGAGGGTTCGATGTGATTGAGAGTATAAAGAAAAATGTTGAAATAGTTTGTCCTGGCGTTGTCTCTTGTGCTGATATTCTGACTCTTTCTGCTCGTGACTCCGTTGTAGCGCTTGGAGGGCCAAGTTGGGAGGTGAAATTGGGAAGAAGAGATTCCGAAACAGCGAGCTTCGCCGCCGTGAGCGGTGCCATTCCTCCGCCAACCTCCACCCTCGACGCCCTTATCGATCGGTTCAACGCAAAAGGCCTTTCCCCACGTGACTTGGTTGCCTTATCTGGGGCACACACGATCGGACAAGCAAAGTGTCTGTTCTTCAAGAACCGTATATACAACGAGACCAATATCGACGAGTCGTTCGCGGAGGAGAGACGAGAGAATTGCCCAGTAAATGGAGGAGACGACAATCGTGAACCTCTGGACTTTAGAACCCCAAATCTTTTTGACAACTACTACTACAAGAACCTTTTGGATAAAAAGGGTCTGCTTCGGTCGGATCAGGTGCTACACGATGGCGGATCCACGGATCCCTTGGTTGAACTCTACGGCGATGACAGTGAAGCCTTCGAGTCTGACTTTGTCACGGCTATGATCAAGATGGGTGACATCGAACCGCTCACTGGATCGCAGGGCGAGATTCGAAACGTTTGTAGCCGACCAAATTACTGA 981 49.24 MGISACSSNKMALALALALFLLAMFMGSSSAQLSPNFYYDSCPKLLDTVRAGIQSAVAKEARMGASLLRLHFHDCFVNGCDGSILLEDTPTFTGEQTAGPNDQSIRGFDVIESIKKNVEIVCPGVVSCADILTLSARDSVVALGGPSWEVKLGRRDSETASFAAVSGAIPPPTSTLDALIDRFNAKGLSPRDLVALSGAHTIGQAKCLFFKNRIYNETNIDESFAEERRENCPVNGGDDNREPLDFRTPNLFDNYYYKNLLDKKGLLRSDQVLHDGGSTDPLVELYGDDSEAFESDFVTAMIKMGDIEPLTGSQGEIRNVCSRPNY 326
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 42723202 42724446 - Lag0009831.1 Lac9g2344 621270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac9g2344 326 Gene3D - 36 322 - -
Lac9g2344 326 PRINTS Haem peroxidase superfamily signature 126 143 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac9g2344 326 PRINTS Haem peroxidase superfamily signature 144 156 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac9g2344 326 PRINTS Haem peroxidase superfamily signature 64 78 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac9g2344 326 PRINTS Haem peroxidase superfamily signature 192 207 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac9g2344 326 PRINTS Haem peroxidase superfamily signature 245 260 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac9g2344 326 PRINTS Plant peroxidase signature 259 276 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac9g2344 326 PRINTS Plant peroxidase signature 191 203 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac9g2344 326 PRINTS Plant peroxidase signature 299 312 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac9g2344 326 PRINTS Plant peroxidase signature 106 119 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac9g2344 326 PRINTS Plant peroxidase signature 125 135 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac9g2344 326 PRINTS Plant peroxidase signature 144 159 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac9g2344 326 PRINTS Plant peroxidase signature 66 86 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac9g2344 326 PRINTS Plant peroxidase signature 243 258 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac9g2344 326 PRINTS Plant peroxidase signature 42 61 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac9g2344 326 Gene3D Peroxidase, domain 2 170 304 - -
Lac9g2344 326 ProSiteProfiles Plant heme peroxidase family profile. 32 325 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac9g2344 326 ProSitePatterns Peroxidases proximal heme-ligand signature. 192 202 IPR019793 -
Lac9g2344 326 PANTHER PEROXIDASE 72-RELATED 20 323 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac9g2344 326 CDD secretory_peroxidase 32 323 IPR033905 GO:0004601(InterPro)|GO:0042744(InterPro)
Lac9g2344 326 SUPERFAMILY Heme-dependent peroxidases 32 325 IPR010255 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac9g2344 326 Pfam Peroxidase 49 288 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac9g2344 326 ProSitePatterns Peroxidases active site signature. 64 75 IPR019794 GO:0004601(InterPro)
Lac9g2344 326 FunFam Peroxidase 170 304 - -
Lac9g2344 326 FunFam Peroxidase 36 177 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac9g2342 Lac-Chr9:42715090 Lac9g2344 Lac-Chr9:42723202 4.90E-158 dispersed
Lac9g2344 Lac-Chr9:42723202 Lac9g2881 Lac-Chr9:46741595 1.50E-74 dispersed
Lac9g2344 Lac-Chr9:42723202 Lac9g2346 Lac-Chr9:42737652 8.00E-84 proximal
Lac9g2343 Lac-Chr9:42719269 Lac9g2344 Lac-Chr9:42723202 1.30E-150 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac9g2344 K00430 - csv:101204245 548.895