Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac9g2346 ATGGCAGCCCTTCGCTCTGTTTTGCTCTTTGTTCTTGTGTTATCAGCTGCCCTGAGCCATAGCCATAGCCATGCACAGCTGACTCCAGACTTCTACAAGAAAGTCTGCCCCAACGCCTTGCCGACCATCAAATCCGTCGTCTGGAAGGCCATCAAACGCGAGCCTCGTATGGGAGCGTCGCTCTTACGTCTCCATTTCCACGACTGCTTTGTCAACGGTTGCGATGGGTCGATTTTGTTGGATGATACCGCTACCTTCACCGGAGAAAAGACGGCCAATCCTAATAGAAACTCGGCTAGAGGATTCGAAGTTGTCGACAAGATTAAGAAACAACTCAACAAAGCTTGCAAAGGGAACGTTGTGTCTTGTGCTGACATCTTAGCTGTTGCTGCTCGTGACTCTCTTGCTATTCTCGGCGGGCTAAACTACAAAGTACTACTAGGAAGAAGAGACGCAAGAACAGCAAGCTTAAATGATGCCAACACAAATCTCCCTCCTCCATTTTTCAACTTTGCACAGCTTCTTTCCAACTTCCAATCCCATGGCCTCGACCTCAAAGACCTCGTCGTGTTATCGGCCGGCCACACCCTCGGCTTCGCTCGATGCACCACATTCCGCTCTCGAATATACAACGACACCAACATCGACCCGAGGTTCGCAGCGGCGCTGCGAGCCAAGTGCCCGCCGAGCGGCAACGATGGCAAACTGCACGGCCTTGACATGACTCCAAATTTCTTTGACAATGCCTACTTCAAGGCCTTGTTGAAGAACAAGGGCCTTCTCCATTCCGACCAGGAACTCTTCGGCGGCGGCAACGGCGACAGCGATAATTTGGTGTCGTTCTACAGTGGATATCCAGTTGAATTTAGAAAGGACTTTGCTTCTTCCATGATCAAAATGGGTAATATGAATCCACTCACAGGAAGTGATGGGGAAGTTAGAGTCAACTGCAGAGTTGTCAACTGA 966 50.1 MAALRSVLLFVLVLSAALSHSHSHAQLTPDFYKKVCPNALPTIKSVVWKAIKREPRMGASLLRLHFHDCFVNGCDGSILLDDTATFTGEKTANPNRNSARGFEVVDKIKKQLNKACKGNVVSCADILAVAARDSLAILGGLNYKVLLGRRDARTASLNDANTNLPPPFFNFAQLLSNFQSHGLDLKDLVVLSAGHTLGFARCTTFRSRIYNDTNIDPRFAAALRAKCPPSGNDGKLHGLDMTPNFFDNAYFKALLKNKGLLHSDQELFGGGNGDSDNLVSFYSGYPVEFRKDFASSMIKMGNMNPLTGSDGEVRVNCRVVN 321
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 42737652 42739298 + Lag0009833.1 Lac9g2346 621272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac9g2346 321 PRINTS Haem peroxidase superfamily signature 58 72 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac9g2346 321 PRINTS Haem peroxidase superfamily signature 121 138 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac9g2346 321 PRINTS Haem peroxidase superfamily signature 239 254 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac9g2346 321 PRINTS Haem peroxidase superfamily signature 139 151 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac9g2346 321 PRINTS Haem peroxidase superfamily signature 187 202 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac9g2346 321 ProSitePatterns Peroxidases active site signature. 58 69 IPR019794 GO:0004601(InterPro)
Lac9g2346 321 PANTHER PEROXIDASE 72-RELATED 8 320 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac9g2346 321 Gene3D - 30 318 - -
Lac9g2346 321 PRINTS Plant peroxidase signature 139 154 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac9g2346 321 PRINTS Plant peroxidase signature 295 308 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac9g2346 321 PRINTS Plant peroxidase signature 60 80 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac9g2346 321 PRINTS Plant peroxidase signature 100 113 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac9g2346 321 PRINTS Plant peroxidase signature 253 270 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac9g2346 321 PRINTS Plant peroxidase signature 237 252 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac9g2346 321 PRINTS Plant peroxidase signature 36 55 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac9g2346 321 PRINTS Plant peroxidase signature 120 130 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac9g2346 321 PRINTS Plant peroxidase signature 186 198 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac9g2346 321 Pfam Peroxidase 44 269 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac9g2346 321 FunFam Peroxidase 30 169 - -
Lac9g2346 321 ProSiteProfiles Plant heme peroxidase family profile. 26 321 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac9g2346 321 SUPERFAMILY Heme-dependent peroxidases 26 321 IPR010255 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac9g2346 321 ProSitePatterns Peroxidases proximal heme-ligand signature. 187 197 IPR019793 -
Lac9g2346 321 FunFam Peroxidase 165 300 - -
Lac9g2346 321 Gene3D Peroxidase, domain 2 165 300 - -
Lac9g2346 321 CDD secretory_peroxidase 26 320 IPR033905 GO:0004601(InterPro)|GO:0042744(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac8g2855 Lac-Chr8:45714609 Lac9g2346 Lac-Chr9:42737652 2.90E-18 dispersed
Lac9g2343 Lac-Chr9:42719269 Lac9g2346 Lac-Chr9:42737652 1.10E-82 dispersed
Lac9g2346 Lac-Chr9:42737652 Lac9g2881 Lac-Chr9:46741595 3.20E-77 dispersed
Lac9g2344 Lac-Chr9:42723202 Lac9g2346 Lac-Chr9:42737652 8.00E-84 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac9g2346 K00430 - csv:101204979 504.982