Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac9g2348 ATGGAGTTTTTCTTCTCTGCTTCTGTTGAAGATCCCACCTACGGCCGCCGGAGACTGCCGGAGCGTACGGCGCCGCCCATGTCTAAGCTCATTTCCACGGCAAATCCGCCATTGTTGCCGGCCCTGTCTCCGCCTCTTTTTTCTCCTTCTTCGTTCTTCACTATCCCTCCTGGGATCAGCCCCACCCAGCTTCTTGATTCCCCTGTTCTTCTTAACCCTTCTAATATTCCGCCCTCGCCGACTACCGGAGCAATTTCCGCCGGAGACTTGACCGGAAACAGAAACAATTCCGGCCACCACCGACAGAACATCAAACAAGAACACATCAACTTACCTGACTTCTCATTTCCTCGTACCCATCCCACAAAATCATCCTCAATGTTTCAATCATCTTCAACACAGCAAAACCGGCCATGGAGTTCTCAACCCGAACCCGCCGTCAGTTTCCCGCCGGAAACCACCATCTTCGGCGGCTCCAAACCGGAGCACCGCCCGCAATCGCAATCGAGAAACAGAGCATCCGACGACGGGTTTAACTGGAGAAAATACGGCCAAAAACTGGTAAAAGGAAGCGAAAATCCCAGAAGCTATTACAAATGTACACATCCAAATTGCCCTGTGAGAAAGCAAGTCGAAAGATCATTCAATGGTCAAATTACAGAAATCGTTTACAAAAGCAAACACAACCATCCAAAACCAGAGTTCACAAGAAGATCGTCATCTTCTTCTTCTTGTTCTTCTTCATCTTCGTGGTTATCGGAAGCTTTGCCTCAAACGATGGCGGCGGAGCCAAAGCATCCGGCGGCCTCTGATTCCATGCCGACGCCGGAGAACTCTTCGATTACGATCGGCGACGATGATTCTGACGAAGCCGATGCAAAAAGATGGAAAAGTGAGAGTGAAAATGAAATGGTGTCGGCGGCGGGAGGGAAGACGGTGAGAGAACAGAGAGTTGTGGTTCAAACGATTAGTAATGTGGATAAATTGGACGATGGATATTGGTGGAGAAAATATGGACAGAAAGTGGTTAGGGGAAATCCAAATCCAAGAAGCTACTACAAATGCACGTACGCAGGCTGTGGAGTGAGGAAGCACATAGAGAGAGCGTCCCACGATTTAAGGGCAGTCATCACTACCTACGAAGGCAAGCACAACCACGAAATTCCGGCAGCCCGTGGCGGCGGTGGCGGCAGACCGGTACTCAATAACCACGGCAGCAGCAACGACGGTGCATTGAACATCGGCAGTAGCGACCGACGACCGAGTTCGGAGATCTCTGGTGGCGATAATGGATTATCAAACATGTTGTGGAGGACCAAAGAAGAGGCAGCCGATGACATTTTCCAGTCGTTATTAGACTGA 1362 50.15 MEFFFSASVEDPTYGRRRLPERTAPPMSKLISTANPPLLPALSPPLFSPSSFFTIPPGISPTQLLDSPVLLNPSNIPPSPTTGAISAGDLTGNRNNSGHHRQNIKQEHINLPDFSFPRTHPTKSSSMFQSSSTQQNRPWSSQPEPAVSFPPETTIFGGSKPEHRPQSQSRNRASDDGFNWRKYGQKLVKGSENPRSYYKCTHPNCPVRKQVERSFNGQITEIVYKSKHNHPKPEFTRRSSSSSSCSSSSSWLSEALPQTMAAEPKHPAASDSMPTPENSSITIGDDDSDEADAKRWKSESENEMVSAAGGKTVREQRVVVQTISNVDKLDDGYWWRKYGQKVVRGNPNPRSYYKCTYAGCGVRKHIERASHDLRAVITTYEGKHNHEIPAARGGGGGRPVLNNHGSSNDGALNIGSSDRRPSSEISGGDNGLSNMLWRTKEEAADDIFQSLLD 453
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 42749885 42753650 + Lag0009835.1 Lac9g2348 621274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac9g2348 453 SMART WRKY_cls 329 388 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lac9g2348 453 SMART WRKY_cls 174 232 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lac9g2348 453 ProSiteProfiles WRKY domain profile. 169 233 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lac9g2348 453 SUPERFAMILY WRKY DNA-binding domain 321 389 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lac9g2348 453 Gene3D WRKY domain 160 234 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lac9g2348 453 Gene3D WRKY domain 314 390 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lac9g2348 453 Pfam WRKY DNA -binding domain 175 231 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lac9g2348 453 Pfam WRKY DNA -binding domain 330 387 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lac9g2348 453 MobiDBLite consensus disorder prediction 165 179 - -
Lac9g2348 453 MobiDBLite consensus disorder prediction 74 179 - -
Lac9g2348 453 MobiDBLite consensus disorder prediction 117 148 - -
Lac9g2348 453 MobiDBLite consensus disorder prediction 287 301 - -
Lac9g2348 453 MobiDBLite consensus disorder prediction 386 431 - -
Lac9g2348 453 SUPERFAMILY WRKY DNA-binding domain 171 233 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lac9g2348 453 MobiDBLite consensus disorder prediction 401 431 - -
Lac9g2348 453 MobiDBLite consensus disorder prediction 223 309 - -
Lac9g2348 453 FunFam WRKY transcription factor 164 234 - -
Lac9g2348 453 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 136 395 IPR044810 GO:0003700(InterPro)
Lac9g2348 453 MobiDBLite consensus disorder prediction 236 256 - -
Lac9g2348 453 FunFam WRKY transcription factor 57 315 389 - -
Lac9g2348 453 MobiDBLite consensus disorder prediction 74 99 - -
Lac9g2348 453 ProSiteProfiles WRKY domain profile. 324 389 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac10g3270 Lac-Chr10:46668075 Lac9g2348 Lac-Chr9:42749885 6.20E-85 dispersed
Lac9g2256 Lac-Chr9:41926862 Lac9g2348 Lac-Chr9:42749885 5.20E-21 dispersed
Lac9g2348 Lac-Chr9:42749885 Lac10g3058 Lac-Chr10:45061822 8.10E-42 dispersed
Lac7g2888 Lac-Chr7:47981406 Lac9g2348 Lac-Chr9:42749885 6.40E-89 wgd
Lac8g2724 Lac-Chr8:44682047 Lac9g2348 Lac-Chr9:42749885 4.90E-64 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
24488 PF03106 WRKY 8.20E-23 CL0274 Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac9g2348 K13424 - mdm:103447297 389.423