Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac9g2357 ATGGCTACCGAGGCGACTGAAGCCACGACTAAGTTTCAGAATTCGGATTTTCGCCTGGTTCCGTCGCCTCCAGATTTCCATCCCGAGATTGTTGTCTCAGCCCATGATGGTCTCCGGTTCTGGCAGTTCATGATTGCCGGTTCAATCGCAGGGTCTGTTGAGCATATGGCTATGTTTCCGGTTGATACTGTCAAGACCCATATGCAAGCCCTTGGTTCTTGTCCAATTAAATCTGTTGGTGTTCGACAAGCCCTTCGGTCGATTTTGAAGTCAGAGGGGCCTGCTGGTTTTTATCGTGGTATTGGTGCTATGGGTCTCGGAGCTGGACCTGCACATGCTGTGTATTTTACGGTTTACGAGAATTGTAAGAAGTTTTTCTCTGGTGGGGATCCTAATAATTCAATTGCCCACGCGGCATCTGGGGTCTGTGCAACGGTGGCGAGTGACGCTGTTCTTACACCCATGGATATGGTGAAGCAGAGGTTGCAGCTTAGTAATAGTCCTTACAAGGGAGTGTTGGATTGTGTCAAAAGGGTCCTTAGAGATGAGGGTTTTAAAGCATTTTACGCATCATATAGAACTACAGTGTTAATGAATGCTCCATTTACTGCTGTGCATTTTGCCACATATGAAGCTGCAAAGAGAGGTTTGATGGAGGTTTCGCCAGAGAGTGCAAATGACGAACAGTGGATTGTTCATGCGACGGCAGGAGCTGCTGCTGGAGCCTTGGCTGCACTTGTTACAACGCCGCTTGATGTGGTTAAGACTCAATTACAATGTCAGGGTGTATGTGGATGCGATAGATTCAAAAGTGGGTCGATCAGGGATGTCTTTCGGACGATACTCAAGAAGGATGGATATAGAGGGCTTATGAGAGGATGGGTTCCAAGGATGCTCTTTCATGCTCCTGCAGCAGCTATTTGCTGGTCGACGTATGAAGCGTTAAAATCCTTCTTCCAAGACCTCAACAGCAGCAGCGACAACTTGACCTGA 993 47.73 MATEATEATTKFQNSDFRLVPSPPDFHPEIVVSAHDGLRFWQFMIAGSIAGSVEHMAMFPVDTVKTHMQALGSCPIKSVGVRQALRSILKSEGPAGFYRGIGAMGLGAGPAHAVYFTVYENCKKFFSGGDPNNSIAHAASGVCATVASDAVLTPMDMVKQRLQLSNSPYKGVLDCVKRVLRDEGFKAFYASYRTTVLMNAPFTAVHFATYEAAKRGLMEVSPESANDEQWIVHATAGAAAGALAALVTTPLDVVKTQLQCQGVCGCDRFKSGSIRDVFRTILKKDGYRGLMRGWVPRMLFHAPAAAICWSTYEALKSFFQDLNSSSDNLT 330
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 42820589 42823709 - Lag0009844.1 Lac9g2357 621283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac9g2357 330 Gene3D Mitochondrial carrier domain 18 166 IPR023395 -
Lac9g2357 330 ProSiteProfiles Solute carrier (Solcar) repeat profile. 38 125 IPR018108 -
Lac9g2357 330 ProSiteProfiles Solute carrier (Solcar) repeat profile. 228 318 IPR018108 -
Lac9g2357 330 SUPERFAMILY Mitochondrial carrier 36 314 IPR023395 -
Lac9g2357 330 FunFam Mitochondrial carrier protein, expressed 133 327 - -
Lac9g2357 330 Pfam Mitochondrial carrier protein 38 128 IPR018108 -
Lac9g2357 330 Pfam Mitochondrial carrier protein 132 219 IPR018108 -
Lac9g2357 330 Pfam Mitochondrial carrier protein 228 321 IPR018108 -
Lac9g2357 330 Gene3D Mitochondrial carrier domain 167 330 IPR023395 -
Lac9g2357 330 ProSiteProfiles Solute carrier (Solcar) repeat profile. 132 216 IPR018108 -
Lac9g2357 330 PANTHER MITOFERRIN-1-RELATED 33 321 - GO:0015093(PANTHER)|GO:0031966(PANTHER)|GO:0048250(PANTHER)
Lac9g2357 330 PRINTS Mitochondrial carrier protein signature 43 56 IPR002067 GO:0055085(InterPro)
Lac9g2357 330 PRINTS Mitochondrial carrier protein signature 56 70 IPR002067 GO:0055085(InterPro)
Lac9g2357 330 PRINTS Mitochondrial carrier protein signature 189 207 IPR002067 GO:0055085(InterPro)
Lac9g2357 330 PRINTS Mitochondrial carrier protein signature 237 259 IPR002067 GO:0055085(InterPro)
Lac9g2357 330 PRINTS Mitochondrial carrier protein signature 147 165 IPR002067 GO:0055085(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac1g1832 Lac-Chr1:40016443 Lac9g2357 Lac-Chr9:42820589 4.10E-130 dispersed
Lac8g2759 Lac-Chr8:44904718 Lac9g2357 Lac-Chr9:42820589 6.30E-29 dispersed
Lac9g0431 Lac-Chr9:8282428 Lac9g2357 Lac-Chr9:42820589 2.90E-20 dispersed
Lac9g2357 Lac-Chr9:42820589 Lac1g1874 Lac-Chr1:40463548 5.50E-16 dispersed
Lac9g2357 Lac-Chr9:42820589 Lac4g3001 Lac-Chr4:48277704 2.70E-23 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac9g2357 K15113 - csv:101215924 622.468