Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Lac9g2362 ATGGGAGCTGGTTCATCGCCATGTGCGTCCTGCAAGTTGCTGCGGCGGCGGTGCGCCGAGAGCTGCATTTTTGCTCCTTATTTCCCTCCTAATGATCCTCAGAGGTTCGCCATTGTTCATAAGATCTTCGGCGCTAGCAATGTCAGCAAAATGTTGCAGGAGCTACCGGTTGATAAGAGAGCAGATGCAGTGAACAGTATAGTATACGAAGCGAGTGCGAGAATGCGAGATCCAGTCTACGGCTGTGTTGGGACGATCTCATTCCTACAAAACGAAGTGTCCCGATTGGAAATGCAGCTAGCGAAAGCGCAGGCAGAGATACTAAGCTTTCAGATGCAACAACAGGTAGCTCCGACCACATTTCCGACGATGGAGATGGACCTATATGATCAAGATCCATTTTTTTTCGCACATCCTGCCGATTCTTCTCATTCCATCAATAGTTTTCAAGAAGTTGAAGATTATTGCTCTCTATGGACCTAA 483 47.62 MGAGSSPCASCKLLRRRCAESCIFAPYFPPNDPQRFAIVHKIFGASNVSKMLQELPVDKRADAVNSIVYEASARMRDPVYGCVGTISFLQNEVSRLEMQLAKAQAEILSFQMQQQVAPTTFPTMEMDLYDQDPFFFAHPADSSHSINSFQEVEDYCSLWT 160
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
9 42835271 42836228 + Lag0009849.1 Lac9g2362 621288
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Lac9g2362 160 ProSiteProfiles LOB domain profile. 6 107 IPR004883 -
Lac9g2362 160 Coils Coil 86 113 - -
Lac9g2362 160 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 6 125 - -
Lac9g2362 160 Pfam Lateral organ boundaries (LOB) domain 7 104 IPR004883 -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac13g1175 Lac-Chr13:10408470 Lac9g2362 Lac-Chr9:42835271 8.90E-47 dispersed
Lac5g2899 Lac-Chr5:47162336 Lac9g2362 Lac-Chr9:42835271 1.10E-30 dispersed
Lac7g2139 Lac-Chr7:35070905 Lac9g2362 Lac-Chr9:42835271 7.80E-28 dispersed
Lac7g2531 Lac-Chr7:43325113 Lac9g2362 Lac-Chr9:42835271 2.30E-32 dispersed
Lac9g0563 Lac-Chr9:10833321 Lac9g2362 Lac-Chr9:42835271 2.60E-34 dispersed
Lac9g0565 Lac-Chr9:10928658 Lac9g2362 Lac-Chr9:42835271 1.40E-35 dispersed
Lac9g2273 Lac-Chr9:42086121 Lac9g2362 Lac-Chr9:42835271 1.10E-39 dispersed
Lac9g2362 Lac-Chr9:42835271 Lac9g2556 Lac-Chr9:44206803 6.00E-32 dispersed
Lac9g2362 Lac-Chr9:42835271 Lac10g1284 Lac-Chr10:11430852 6.00E-40 transposed
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
24489 PF03195 LOB 9.30E-41 No_clan Lac TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac9g2362 - - - 0.0