Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lac9g2362 | ATGGGAGCTGGTTCATCGCCATGTGCGTCCTGCAAGTTGCTGCGGCGGCGGTGCGCCGAGAGCTGCATTTTTGCTCCTTATTTCCCTCCTAATGATCCTCAGAGGTTCGCCATTGTTCATAAGATCTTCGGCGCTAGCAATGTCAGCAAAATGTTGCAGGAGCTACCGGTTGATAAGAGAGCAGATGCAGTGAACAGTATAGTATACGAAGCGAGTGCGAGAATGCGAGATCCAGTCTACGGCTGTGTTGGGACGATCTCATTCCTACAAAACGAAGTGTCCCGATTGGAAATGCAGCTAGCGAAAGCGCAGGCAGAGATACTAAGCTTTCAGATGCAACAACAGGTAGCTCCGACCACATTTCCGACGATGGAGATGGACCTATATGATCAAGATCCATTTTTTTTCGCACATCCTGCCGATTCTTCTCATTCCATCAATAGTTTTCAAGAAGTTGAAGATTATTGCTCTCTATGGACCTAA | 483 | 47.62 | MGAGSSPCASCKLLRRRCAESCIFAPYFPPNDPQRFAIVHKIFGASNVSKMLQELPVDKRADAVNSIVYEASARMRDPVYGCVGTISFLQNEVSRLEMQLAKAQAEILSFQMQQQVAPTTFPTMEMDLYDQDPFFFAHPADSSHSINSFQEVEDYCSLWT | 160 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 9 | 42835271 | 42836228 | + | Lag0009849.1 | Lac9g2362 | 621288 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lac9g2362 | 160 | ProSiteProfiles | LOB domain profile. | 6 | 107 | IPR004883 | - | |
| Lac9g2362 | 160 | Coils | Coil | 86 | 113 | - | - | |
| Lac9g2362 | 160 | PANTHER | LOB DOMAIN-CONTAINING PROTEIN 4-RELATED | 6 | 125 | - | - | |
| Lac9g2362 | 160 | Pfam | Lateral organ boundaries (LOB) domain | 7 | 104 | IPR004883 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lac13g1175 | Lac-Chr13:10408470 | Lac9g2362 | Lac-Chr9:42835271 | 8.90E-47 | dispersed | |
| Lac5g2899 | Lac-Chr5:47162336 | Lac9g2362 | Lac-Chr9:42835271 | 1.10E-30 | dispersed | |
| Lac7g2139 | Lac-Chr7:35070905 | Lac9g2362 | Lac-Chr9:42835271 | 7.80E-28 | dispersed | |
| Lac7g2531 | Lac-Chr7:43325113 | Lac9g2362 | Lac-Chr9:42835271 | 2.30E-32 | dispersed | |
| Lac9g0563 | Lac-Chr9:10833321 | Lac9g2362 | Lac-Chr9:42835271 | 2.60E-34 | dispersed | |
| Lac9g0565 | Lac-Chr9:10928658 | Lac9g2362 | Lac-Chr9:42835271 | 1.40E-35 | dispersed | |
| Lac9g2273 | Lac-Chr9:42086121 | Lac9g2362 | Lac-Chr9:42835271 | 1.10E-39 | dispersed | |
| Lac9g2362 | Lac-Chr9:42835271 | Lac9g2556 | Lac-Chr9:44206803 | 6.00E-32 | dispersed | |
| Lac9g2362 | Lac-Chr9:42835271 | Lac10g1284 | Lac-Chr10:11430852 | 6.00E-40 | transposed |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 24489 | PF03195 | LOB | 9.30E-41 | No_clan | Lac | TF |
Pathway information