Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac9g2386 ATGATGTGTAATGGTTGCAATAGAAAATCTGCAAGCCCCAACTTCGTGATGGACGGTTGCAATAGAAATTTGGGGTTTTGTATCTCTGTTTTGTTGGAATTTTCGGCGACAGATGACCTGATTGGATTTAGGAGTGCTGTTGAGGAAGATGGACGTGATATTGATGAGGCAAGTTTGTGGTATGGGAGGATTTTTGGTTCAAAAAAGATGGGATATGAAGAAAGGACCCCTCTTATGGTTGCAGCCATGTTTGGGAGCTTGAATGTCCTGTCTTATATCGTTCACAGTGGTCGCGTCGATGTTAATCGGGCTTGTGGTTCGGATGGTGCAACGGCTCTCCATTGTGCTGTTGCTGGTGGTTCTGCTGTTTCAGATCAGGTTGTCAAACTCTTGCTTGATGCTTCTGCTGATGTGAACGCTGTCGATGCAAACGGTTACCGGCCTGGGGACTTGATTGCTCCTGATTTTACTTTAGCCTCCTCCTATTCGAGGAAAAAGGCACTACAACAATTGCTAAGTGGCCGTGGTAACAACGAAGAAGCTCTTGGTTCATCTGAGGCGATATTTTATGAGAGGGAGACACAGGAGCCACGGGAGCTTTCAACGCCTCGGGTTTCAAGAGATGGGACGGAGAAGAAAGAGTATCCAGTTGATCTATCACTTCCAGACATCAAGAATGGAATCTATAGCACAGATGAGTTTAGAATGTATACTTTTAAGATCAAACCTTGTACAAGAGCTTACTCCCATGATTGGACGGAGTGTCCATTTGTTCACCCTGGGGAAAATGCGAGGAGGCGGGATCCGAGGAAATACCATTACAGCTGTGTCCCGTGTCCCGAATTCAGAAAGGGCACATGTAGGCAGGGGGATGCCTGTGAGTATGCTCATGGAATTTTTGAATGTTGGCTCCATCCTGCTCAGTACCGTACCCGTCTTTGCAAGGATGAAACTGGATGCACCAGAAAGGTCTGTTTCTTTGCTCACAAACCGGAAGAGCTCCGCCCCTTGTATGCTTCAACCGGTTCTGCTGTTCTGTCTCCAAGATCAATCTGTGGTTCTTCGCTAGACATCGCGTCAATCAGCCCGCTCACACTTGGTTCTCCTTCAGCTCTGATACCTCCTTCAACAACTCCTCCCATGACTCCTGGAGTTTCTTCTCCAATGGGTGGAACCATGTGGCAGACTCAATGTAATGTTGCGCCTCCGACCTTGCAGCTTCCGGGTAGCAGGTTGAAGGTTGCTTTGAGTGCAAGAGACATAGATTTAGATGTCGAGTTACTTGGTCTCGAAAGCCAGCGCCGTAGACAGCAACAGTTAATGGATGAGATATCCTGTCTGTCTTCCCCTTCCAGATGGAACAATGGCTTGTCAACCGCTGCATCTTTTCCATCCCCAAGGAGTAGAAATGGAGAATTGAATGGACTTGGAGGCATGAAGCCTACTAACCTCGACGACTTTTTCGGGTCCGTAGATCCTTCAATTTTGCCTCAATTACAAGGACTTTCGCTGGATTCCATGGGGTCTCAAGTACAATCCCCTTCCGGGATTCAGATGCGCCAAAGCCTGAATCAGTCTTACCTTTCGAGCTATGCCAACAGCATTGCATCCCCTACATCAAGGGCGTCTCAACCATTTGGCGTCGACTCGTCTATGTCTGCTGCAGCAAGCGTTCTGAGTTCCAGGGCTGCTGCCTTCGCCAAGCGCAGCCAGAGCTTCATCGAACGTAGTATGGTGAACCGTCATGCTGGGTTTTCACCTCCAGCTTCATCTGCAACTGCTGTGCCTTTGAACCTGTCTGATTGGGGTTCACCGGATGGGAAACTAGACTGGGGAATTCATGGAGAAGAACTCAACAAGTTAAGGAAGTCTTCATCATTTGGGCTTCGAAGCAGTTCTCTAGCAACATCCACAATGCACGCCGCGACTGCCGAGCCAGACGTGTCCTGGGTTCAGTCCCTGGTTAAGGATGCTCCGACCGAGAACTCCGTGCAGTTGAGTATGGACGAGCAGCAGCAACAGCAACAGCAGCTTTGTTATCTCGACAATGGCGATTCGAAGAAAATGTACAGGGAACAGGAGCAGTTGGTCGCTTAA 2097 48.64 MMCNGCNRKSASPNFVMDGCNRNLGFCISVLLEFSATDDLIGFRSAVEEDGRDIDEASLWYGRIFGSKKMGYEERTPLMVAAMFGSLNVLSYIVHSGRVDVNRACGSDGATALHCAVAGGSAVSDQVVKLLLDASADVNAVDANGYRPGDLIAPDFTLASSYSRKKALQQLLSGRGNNEEALGSSEAIFYERETQEPRELSTPRVSRDGTEKKEYPVDLSLPDIKNGIYSTDEFRMYTFKIKPCTRAYSHDWTECPFVHPGENARRRDPRKYHYSCVPCPEFRKGTCRQGDACEYAHGIFECWLHPAQYRTRLCKDETGCTRKVCFFAHKPEELRPLYASTGSAVLSPRSICGSSLDIASISPLTLGSPSALIPPSTTPPMTPGVSSPMGGTMWQTQCNVAPPTLQLPGSRLKVALSARDIDLDVELLGLESQRRRQQQLMDEISCLSSPSRWNNGLSTAASFPSPRSRNGELNGLGGMKPTNLDDFFGSVDPSILPQLQGLSLDSMGSQVQSPSGIQMRQSLNQSYLSSYANSIASPTSRASQPFGVDSSMSAAASVLSSRAAAFAKRSQSFIERSMVNRHAGFSPPASSATAVPLNLSDWGSPDGKLDWGIHGEELNKLRKSSSFGLRSSSLATSTMHAATAEPDVSWVQSLVKDAPTENSVQLSMDEQQQQQQQLCYLDNGDSKKMYREQEQLVA 698
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 43013698 43015794 - Lag0009873.1 Lac9g2386 621312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac9g2386 698 PANTHER UNKEMPT FAMILY MEMBER 69 658 IPR045234 -
Lac9g2386 698 MobiDBLite consensus disorder prediction 192 211 - -
Lac9g2386 698 SMART c3hfinal6 308 331 IPR000571 GO:0046872(InterPro)
Lac9g2386 698 SMART c3hfinal6 273 299 IPR000571 GO:0046872(InterPro)
Lac9g2386 698 ProSiteProfiles Zinc finger C3H1-type profile. 278 300 IPR000571 GO:0046872(InterPro)
Lac9g2386 698 Gene3D - 38 174 IPR036770 -
Lac9g2386 698 SUPERFAMILY Ankyrin repeat 70 171 IPR036770 -
Lac9g2386 698 ProSiteProfiles Ankyrin repeat region circular profile. 108 142 - -
Lac9g2386 698 Pfam Ankyrin repeats (3 copies) 73 142 IPR002110 GO:0005515(InterPro)
Lac9g2386 698 FunFam Zinc finger CCCH domain-containing protein 66 231 299 - -
Lac9g2386 698 SMART ANK_2a 73 103 IPR002110 GO:0005515(InterPro)
Lac9g2386 698 SMART ANK_2a 108 140 IPR002110 GO:0005515(InterPro)
Lac9g2386 698 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 277 298 IPR000571 GO:0046872(InterPro)
Lac9g2386 698 Gene3D - 274 336 - -
Lac9g2386 698 ProSiteProfiles Ankyrin repeat profile. 108 143 IPR002110 GO:0005515(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac11g0514 Lac-Chr11:5348094 Lac9g2386 Lac-Chr9:43013698 1.10E-125 dispersed
Lac13g1129 Lac-Chr13:9920605 Lac9g2386 Lac-Chr9:43013698 1.60E-216 dispersed
Lac6g3056 Lac-Chr6:48163544 Lac9g2386 Lac-Chr9:43013698 4.50E-52 dispersed
Lac9g2386 Lac-Chr9:43013698 Lac3g0988 Lac-Chr3:8046319 5.60E-50 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
24494 PF12796 Ank_2 1.60E-08 CL0465 Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac9g2386 - - - 0.0