Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lac9g2413 | ATGTATTTGATAGGAATTGCAAATGCTATCGACTTAGCAGATCGCTTTCTTCCAAAACTTCAGGCACTGAATTGCAAACCTCAGGTTGTAACGTATAGGGCTTATTCCAAGGATCAGATCCTCAAGATTCTCCAACAAAGGTTAATTGCATTGCCTTTCGTTGTCTTTCAACCGCTAGCTCTGGAGCTTTGTGCTAGAAAAGTTGCAGCTGTGTCTGGAGATATGAGAAAAGCTCTTTATGTTTGCAGTAATGCCATTGAATTGTTAGAGGTGGAACTCAAAGCATCCTCTAAGGAGCTGAACCATAACGACGGGAGTGAAGCTTCAACACCTGAGTTTGTAAAAAAACAAGAGCCTCAGATTGTGAGGTTGGACCATATGGCTGTTGCTTTATCCAAGGCTTTTAAATCACCAGCGGTGGAAACCATACAGTCTCTTCCTCAACATCAACAGATTATTTTATGCTCTGTTGTGAAACTCTTTCGTGGAGGGAAGAAGGATACAACAATAGGAGAGCTTAACAAATCATATTTAGATATATGCAAATCAACACACATCCCTCCGGTGGGAGCTTTCGAACTTTCAAATATGTGCACAGTGCTAAGCGATCAGGGGCTTCTCGTACTTGGCAAGTCTCGAGTCGATAAAACGAGGCGAGTGTTGTTGAAAGTTGATGAAGCCGATGTCGTGTTTGCATTACAGATGATGTCCTCACAAGATTCTGGCGATGGAGGCCCAAAAAATTATAAAATAAAAGCCCAGGCCCACAACAAAACAACAGCTGTCTGTCGACGGTCAAAGAGTCAAACTATTACCGGCGGTATATATAATCCCCACCGCCACTGCCCATCGTCGAAAAACTTCGGCGATTCGTTTCTCTGTTGGCGTTGGTGGCGTACTGTCGAAGCTACGCCGCTTGACGAAGGCGAATTCGGCGATTCGTTTCATCTGAAGCATCTTCTTTCACATTCTGACTTCCGAACCGAGTCCCGAGGCCATGGTTGCAGTTGCTCATCGGCGGAACTTTGGTGTATGATCCATCCCTGTGGACTTTCGCACTCTGTATTTTCAAAAGTTGCCTCCCAATGCTTGGTCTGGCCACTGTTTCATTCACGACCCTAA | 1122 | 44.74 | MYLIGIANAIDLADRFLPKLQALNCKPQVVTYRAYSKDQILKILQQRLIALPFVVFQPLALELCARKVAAVSGDMRKALYVCSNAIELLEVELKASSKELNHNDGSEASTPEFVKKQEPQIVRLDHMAVALSKAFKSPAVETIQSLPQHQQIILCSVVKLFRGGKKDTTIGELNKSYLDICKSTHIPPVGAFELSNMCTVLSDQGLLVLGKSRVDKTRRVLLKVDEADVVFALQMMSSQDSGDGGPKNYKIKAQAHNKTTAVCRRSKSQTITGGIYNPHRHCPSSKNFGDSFLCWRWWRTVEATPLDEGEFGDSFHLKHLLSHSDFRTESRGHGCSCSSAELWCMIHPCGLSHSVFSKVASQCLVWPLFHSRP | 373 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 9 | 43218926 | 43225495 | - | Lag0009900.1 | Lac9g2413 | 621339 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lac9g2413 | 373 | Pfam | CDC6, C terminal winged helix domain | 141 | 232 | IPR015163 | - | |
| Lac9g2413 | 373 | CDD | Cdc6_C | 147 | 229 | IPR015163 | - | |
| Lac9g2413 | 373 | Gene3D | - | 144 | 236 | IPR036388 | - | |
| Lac9g2413 | 373 | Gene3D | - | 19 | 143 | - | - | |
| Lac9g2413 | 373 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 3 | 92 | IPR027417 | - | |
| Lac9g2413 | 373 | PANTHER | CELL DIVISION CONTROL PROTEIN 6-RELATED | 3 | 234 | IPR050311 | GO:0003688(PANTHER)|GO:0005634(PANTHER)|GO:0033314(PANTHER) | |
| Lac9g2413 | 373 | Pfam | Cdc6/ORC-like, ATPase lid domain | 35 | 92 | IPR054425 | - | |
| Lac9g2413 | 373 | SMART | Cdc6_C_2 | 154 | 233 | IPR015163 | - | |
| Lac9g2413 | 373 | SUPERFAMILY | Winged helix DNA-binding domain | 140 | 234 | IPR036390 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lac12g1688 | Lac-Chr12:32661963 | Lac9g2413 | Lac-Chr9:43218926 | 8.80E-49 | dispersed | |
| Lac7g0404 | Lac-Chr7:3173995 | Lac9g2413 | Lac-Chr9:43218926 | 1.30E-24 | dispersed | |
| Lac9g2413 | Lac-Chr9:43218926 | Lac12g1517 | Lac-Chr12:28163702 | 1.30E-13 | dispersed | |
| Lac9g2413 | Lac-Chr9:43218926 | Lac12g1686 | Lac-Chr12:32647259 | 4.20E-52 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lac9g2413 | K02213 | - | csv:101205741 | 373.244 |