Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Lac9g2452 ATGGAGCAGAAGAAGAGGGAGGACCATTCTAATGGTGGTAATGGTAGTATTGATGGCGATGAAAGAGTTCTTCTGTGGGAGGAGGGCCTGCCCGACGTTGAGAAGTTAACCCCTCTTTCTCAGTCGCTGATACCGCAGGAACTCGCTTCGGCGTTCAGGATCTTGATGGAACCTTGTCGGAGTGTATCGGATGTTAATTCGGCGTCGAAGACGACGATATTGAATATTCGGGATGGGCAGTCGGAGGGATATAGAAGTTTTGAGTTTAATGACGATCGGAGGCGAGGTGAAGACGTCGTGATGGTTGAATCGCACGAGGCGGTTGATCCAGATGAGTTGGGATCCGATTCGCGGAAATTGAGGAAGGTTGATTTTGTTGAAGAGGCGAATTTAGCGCCTCGGGCGGAGAATTTGATCGACGACGCGGCGTTGGCTCGAACCTTGAAACGGCCGCGGCTGGCTTGGACTCCGCAATTGCACAAACGGTTCGTGGATGTGGTTGCTCATTTAGGGCTCAAAGACGCTGCTCCCAAAGCCATTATGCGATTGATGAATGTGGAGGGACTGACTCGCGAGAACGTTGCCAGTCATCTTCAGAAGTATCGGCTTTACTTGAAGAGGACAGAAATATCCTCAATGACTGATGAGGCTCTTGTTCCGGTGCCGGTGACGCAGAACTCACATGATTCTGCTCCCAGTGCCGATTCACGTGGAAGCGGGTATTTTCCGGCTACTTTTCCGATGACTTACTTGCCGTCTCCGATGATGCCTATGATGTTTTATGGTATGGGAGCTCATGGTCACGGTCTTAATCATACCGGCATGCCAATGGTTAACATGAGCACCGTGCCGAGTCACTCGAAAGGGCAGCAAGATTGA 879 50.85 MEQKKREDHSNGGNGSIDGDERVLLWEEGLPDVEKLTPLSQSLIPQELASAFRILMEPCRSVSDVNSASKTTILNIRDGQSEGYRSFEFNDDRRRGEDVVMVESHEAVDPDELGSDSRKLRKVDFVEEANLAPRAENLIDDAALARTLKRPRLAWTPQLHKRFVDVVAHLGLKDAAPKAIMRLMNVEGLTRENVASHLQKYRLYLKRTEISSMTDEALVPVPVTQNSHDSAPSADSRGSGYFPATFPMTYLPSPMMPMMFYGMGAHGHGLNHTGMPMVNMSTVPSHSKGQQD 292
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
9 43445448 43446326 - Lag0009939.1 Lac9g2452 621378
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Lac9g2452 292 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 152 206 IPR017930 -
Lac9g2452 292 MobiDBLite consensus disorder prediction 1 20 - -
Lac9g2452 292 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 20 291 IPR044841 GO:0003700(InterPro)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro)
Lac9g2452 292 Pfam Myb-like DNA-binding domain 152 202 IPR001005 -
Lac9g2452 292 SUPERFAMILY Homeodomain-like 147 207 IPR009057 -
Lac9g2452 292 Gene3D - 147 208 - -
Lac9g2452 292 FunFam Two-component response regulator 146 209 - -
Lac9g2452 292 NCBIfam myb-like DNA-binding domain, SHAQKYF class 151 203 IPR006447 GO:0003677(InterPro)
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac9g2452 Lac-Chr9:43445448 Lac4g2495 Lac-Chr4:44260895 2.40E-07 dispersed
Lac7g2753 Lac-Chr7:46695277 Lac9g2452 Lac-Chr9:43445448 3.50E-74 wgd
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
24497 PF00249 Myb_DNA-binding 8.10E-09 CL0123 Lac TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac9g2452 - - - 0.0