Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lac9g2452 | ATGGAGCAGAAGAAGAGGGAGGACCATTCTAATGGTGGTAATGGTAGTATTGATGGCGATGAAAGAGTTCTTCTGTGGGAGGAGGGCCTGCCCGACGTTGAGAAGTTAACCCCTCTTTCTCAGTCGCTGATACCGCAGGAACTCGCTTCGGCGTTCAGGATCTTGATGGAACCTTGTCGGAGTGTATCGGATGTTAATTCGGCGTCGAAGACGACGATATTGAATATTCGGGATGGGCAGTCGGAGGGATATAGAAGTTTTGAGTTTAATGACGATCGGAGGCGAGGTGAAGACGTCGTGATGGTTGAATCGCACGAGGCGGTTGATCCAGATGAGTTGGGATCCGATTCGCGGAAATTGAGGAAGGTTGATTTTGTTGAAGAGGCGAATTTAGCGCCTCGGGCGGAGAATTTGATCGACGACGCGGCGTTGGCTCGAACCTTGAAACGGCCGCGGCTGGCTTGGACTCCGCAATTGCACAAACGGTTCGTGGATGTGGTTGCTCATTTAGGGCTCAAAGACGCTGCTCCCAAAGCCATTATGCGATTGATGAATGTGGAGGGACTGACTCGCGAGAACGTTGCCAGTCATCTTCAGAAGTATCGGCTTTACTTGAAGAGGACAGAAATATCCTCAATGACTGATGAGGCTCTTGTTCCGGTGCCGGTGACGCAGAACTCACATGATTCTGCTCCCAGTGCCGATTCACGTGGAAGCGGGTATTTTCCGGCTACTTTTCCGATGACTTACTTGCCGTCTCCGATGATGCCTATGATGTTTTATGGTATGGGAGCTCATGGTCACGGTCTTAATCATACCGGCATGCCAATGGTTAACATGAGCACCGTGCCGAGTCACTCGAAAGGGCAGCAAGATTGA | 879 | 50.85 | MEQKKREDHSNGGNGSIDGDERVLLWEEGLPDVEKLTPLSQSLIPQELASAFRILMEPCRSVSDVNSASKTTILNIRDGQSEGYRSFEFNDDRRRGEDVVMVESHEAVDPDELGSDSRKLRKVDFVEEANLAPRAENLIDDAALARTLKRPRLAWTPQLHKRFVDVVAHLGLKDAAPKAIMRLMNVEGLTRENVASHLQKYRLYLKRTEISSMTDEALVPVPVTQNSHDSAPSADSRGSGYFPATFPMTYLPSPMMPMMFYGMGAHGHGLNHTGMPMVNMSTVPSHSKGQQD | 292 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 9 | 43445448 | 43446326 | - | Lag0009939.1 | Lac9g2452 | 621378 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lac9g2452 | 292 | ProSiteProfiles | Myb-type HTH DNA-binding domain profile. | 152 | 206 | IPR017930 | - | |
| Lac9g2452 | 292 | MobiDBLite | consensus disorder prediction | 1 | 20 | - | - | |
| Lac9g2452 | 292 | PANTHER | HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED | 20 | 291 | IPR044841 | GO:0003700(InterPro)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro) | |
| Lac9g2452 | 292 | Pfam | Myb-like DNA-binding domain | 152 | 202 | IPR001005 | - | |
| Lac9g2452 | 292 | SUPERFAMILY | Homeodomain-like | 147 | 207 | IPR009057 | - | |
| Lac9g2452 | 292 | Gene3D | - | 147 | 208 | - | - | |
| Lac9g2452 | 292 | FunFam | Two-component response regulator | 146 | 209 | - | - | |
| Lac9g2452 | 292 | NCBIfam | myb-like DNA-binding domain, SHAQKYF class | 151 | 203 | IPR006447 | GO:0003677(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lac9g2452 | Lac-Chr9:43445448 | Lac4g2495 | Lac-Chr4:44260895 | 2.40E-07 | dispersed | |
| Lac7g2753 | Lac-Chr7:46695277 | Lac9g2452 | Lac-Chr9:43445448 | 3.50E-74 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 24497 | PF00249 | Myb_DNA-binding | 8.10E-09 | CL0123 | Lac | TF |
Pathway information