Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac9g2465 ATGGCCAACGTGTTTTCTCTCTGCATTATTTCTCTACTCTCGTTTTTCTTCATCGTCGATGCTAGAATCCCCGGCGTTTACTCCGGCGGCGCCTGGCAGAACGCCCACGCCACCTTCTACGGCGGCTCTGACGCTTCCGGCACCATGGGTGGAGCTTGTGGGTATGGAAATCTTTACAGCCAAGGGTACGGAGTGAACACGGCGGCGCTGAGTACGGCGCTGTTCAACAATGGGCAGAGCTGCGGCGCTTGCTTCGAGATTAAGTGTGCTAATGACCCGCGGTGGTGCCATTCCGGTAGCCCGTCGATCTTGGTCACTGCGACCAATTTCTGCCCGCCGAACTATGCTCTTCCCAACGACAATGGCGGCTGGTGTAACCCTCCTCGGTCCCACTTCGACCTCGCCATGCCCATGTTCCTTAAAATTGCCGAGTACCGCGCCGGTATCGTCCCCGTCAGTTACCGCCGAGTGCCATGCCGGAAGCAGGGAGGAATCAGGTTCACGATCAACGGCTTCCGATACTTCAATCTGGTTCTAATCACCAACGTCGCGGGTGCAGGGGATATCGTGAGGGCTAGCGTGAAAGGGTCAAAGACAGGGTGGATGAGCATGACAAGAAACTGGGGGCAAAACTGGCAATCCAATGCCGTATTGGTGGGCCAGGCTCTGTCCTTCAGAGTTACGGGCAGTGACCGACGAACCTCAACGTCATGGAACATCGTGCCCGCCAATTGGCAGTTTGGCCAGACTTTCACCGGGAAAAACTTCCGCGTTTAA 777 56.24 MANVFSLCIISLLSFFFIVDARIPGVYSGGAWQNAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGQSCGACFEIKCANDPRWCHSGSPSILVTATNFCPPNYALPNDNGGWCNPPRSHFDLAMPMFLKIAEYRAGIVPVSYRRVPCRKQGGIRFTINGFRYFNLVLITNVAGAGDIVRASVKGSKTGWMSMTRNWGQNWQSNAVLVGQALSFRVTGSDRRTSTSWNIVPANWQFGQTFTGKNFRV 258
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 43539314 43540652 + Lag0009952.1 Lac9g2465 621391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac9g2465 258 FunFam Expansin 21 160 - -
Lac9g2465 258 Pfam Expansin C-terminal domain 165 242 IPR007117 -
Lac9g2465 258 Gene3D - 164 256 IPR036749 -
Lac9g2465 258 Pfam Lytic transglycolase 67 154 IPR009009 -
Lac9g2465 258 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 174 253 IPR007117 -
Lac9g2465 258 SUPERFAMILY PHL pollen allergen 161 253 IPR036749 -
Lac9g2465 258 SMART dpbb_1 67 154 IPR007112 -
Lac9g2465 258 SUPERFAMILY Barwin-like endoglucanases 31 182 IPR036908 -
Lac9g2465 258 PRINTS Expansin/Lol pI family signature 31 46 IPR007118 GO:0005576(InterPro)
Lac9g2465 258 PRINTS Expansin/Lol pI family signature 49 67 IPR007118 GO:0005576(InterPro)
Lac9g2465 258 PRINTS Expansin/Lol pI family signature 201 215 IPR007118 GO:0005576(InterPro)
Lac9g2465 258 PRINTS Expansin/Lol pI family signature 239 253 IPR007118 GO:0005576(InterPro)
Lac9g2465 258 PRINTS Expansin/Lol pI family signature 147 163 IPR007118 GO:0005576(InterPro)
Lac9g2465 258 PRINTS Expansin/Lol pI family signature 71 89 IPR007118 GO:0005576(InterPro)
Lac9g2465 258 CDD DPBB_EXPA_N 32 159 - -
Lac9g2465 258 FunFam Expansin 164 256 - -
Lac9g2465 258 Gene3D - 20 160 IPR036908 -
Lac9g2465 258 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 50 164 IPR007112 -
Lac9g2465 258 PANTHER EXPANSIN-A15 11 256 IPR002963 GO:0009664(InterPro)
Lac9g2465 258 PRINTS Expansin signature 163 175 IPR002963 GO:0009664(InterPro)
Lac9g2465 258 PRINTS Expansin signature 175 196 IPR002963 GO:0009664(InterPro)
Lac9g2465 258 PRINTS Expansin signature 62 76 IPR002963 GO:0009664(InterPro)
Lac9g2465 258 PRINTS Expansin signature 89 100 IPR002963 GO:0009664(InterPro)
Lac9g2465 258 PRINTS Expansin signature 103 113 IPR002963 GO:0009664(InterPro)
Lac9g2465 258 PRINTS Expansin signature 210 231 IPR002963 GO:0009664(InterPro)
Lac9g2465 258 PRINTS Expansin signature 122 139 IPR002963 GO:0009664(InterPro)
Lac9g2465 258 PRINTS Expansin signature 139 152 IPR002963 GO:0009664(InterPro)
Lac9g2465 258 PRINTS Expansin signature 239 255 IPR002963 GO:0009664(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac1g2180 Lac-Chr1:43229203 Lac9g2465 Lac-Chr9:43539314 1.10E-89 dispersed
Lac4g0594 Lac-Chr4:13865005 Lac9g2465 Lac-Chr9:43539314 2.60E-77 dispersed
Lac8g1985 Lac-Chr8:38259743 Lac9g2465 Lac-Chr9:43539314 1.60E-74 dispersed
Lac8g2843 Lac-Chr8:45632129 Lac9g2465 Lac-Chr9:43539314 8.80E-99 dispersed
Lac11g2161 Lac-Chr11:37673880 Lac9g2465 Lac-Chr9:43539314 2.30E-78 transposed
Lac12g0452 Lac-Chr12:5015580 Lac9g2465 Lac-Chr9:43539314 7.60E-74 transposed
Lac1g2050 Lac-Chr1:42040877 Lac9g2465 Lac-Chr9:43539314 3.40E-138 wgd
Lac13g0995 Lac-Chr13:8319658 Lac9g2465 Lac-Chr9:43539314 2.60E-138 wgd
Lac7g2733 Lac-Chr7:46407114 Lac9g2465 Lac-Chr9:43539314 2.70E-135 wgd
Lac8g2527 Lac-Chr8:43068512 Lac9g2465 Lac-Chr9:43539314 1.90E-123 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac9g2465 - - - 0.0