Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lac9g2477 | ATGGCAGATGGGGAGGATATTCAGCCACTAGTCTGCGACAATGGAACAGGAATGGTCAAGGCTGGCTTTGCCGGAGATGATGCTCCAAGGGCCGTGTTTCCTAGTATAGTAGGTCGACCAAGGCATACCGGTGTGATGGTTGGCATGGGCCAAAAGGATGCGTATGTTGGGGATGAAGCTCAGTCCAAACGAGGTATATTAACTTTGAAATATCCCATTGAGCATGGTATAGTGAGCAATTGGGATGACATGGAGAAAATTTGGCATCATACCTTCTACAATGAACTGCGAGTGGCTCCTGAAGAGCACCCTGTGCTACTCACTGAAGCACCTCTGAACCCAAAGGCTAATCGTGAAAAGATGACCCAAATCATGTTCGAGACCTTCAACACTCCTGCCATGTATGTTGCCATTCAGGCTGTTCTTTCCCTCTATGCTAGTGGACGCACAACTGAGAATTTGGCTATACCTATATCTTCTTTTGTTCGTGAAAAAATTCAATTATGTATAAGCCACCCTGTTTTTATGGAAATGGAAATGTATTGTTTTGGATTCTGGAGATGGTGTCAGTCACACTGTCCCAATTTACGAGGGTATGCTCTCCCCCATGCCATTCTTCGTCTTGACCTTGCTGGCCGTGACCTCACTGATGCCCTCATGAAAATCTTGACTGAACGTGGGTATTCCTTCACCACCACAGCTGAGCGTGAAATTGTGAGAGACGTGAAGGAAAAACTAGCATATATTGCCCTGGACTTTGAGCAAGAACTTGAAACTTCCAAAACTGGTTCATCTGTTGAGAAGAGCTATGAACTTCCAGATGGGCAGATTATCACAATTGGTGCAGAACGTTTTCGATGTCCTGAAGTTCTTTTCCAGCCTTCAATGATTGGAATGGAAGCTGCAGGCATCCACGAGACAACATATAACTCCATCATGAAGTGTGATGTTGATATCAGGAAGGATCTGTATGGAAATATTGTTCTTAGTGGTGGTTCAACCATGTTCCCTGGCATTGCTGACAGAATGAGCAAAGAAATAACTGCATTAGCCCCTAGCAGCATGAAAATTAAGGTGGTAGCACCACCTGAAAGAAAGTATAGTGTCTGGATTGGTGGCTCCATTCTGGCCTCACTGAGCACATTCCAGCAGATGTGGATTGCAAAGGCAGAGTATGATGAGTCTGGTCCATCCATTGTGCACAGGAAATGCTTCTGA | 1218 | 45.16 | MADGEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTENLAIPISSFVREKIQLCISHPVFMEMEMYCFGFWRWCQSHCPNLRGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDVKEKLAYIALDFEQELETSKTGSSVEKSYELPDGQIITIGAERFRCPEVLFQPSMIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF | 405 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 9 | 43622271 | 43624188 | - | Lag0009964.1 | Lac9g2477 | 621403 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lac9g2477 | 405 | Gene3D | - | 1 | 166 | - | - | |
| Lac9g2477 | 405 | Gene3D | - | 193 | 368 | - | - | |
| Lac9g2477 | 405 | ProSitePatterns | Actins and actin-related proteins signature. | 106 | 118 | IPR020902 | - | |
| Lac9g2477 | 405 | FunFam | Actin, alpha skeletal muscle | 36 | 73 | - | - | |
| Lac9g2477 | 405 | FunFam | Putative actin-related protein 5 | 369 | 397 | - | - | |
| Lac9g2477 | 405 | SUPERFAMILY | Actin-like ATPase domain | 5 | 148 | IPR043129 | - | |
| Lac9g2477 | 405 | ProSitePatterns | Actins signature 2. | 386 | 394 | IPR004001 | - | |
| Lac9g2477 | 405 | SMART | actin_3 | 7 | 405 | IPR004000 | - | |
| Lac9g2477 | 405 | FunFam | Actin, alpha skeletal muscle | 3 | 165 | - | - | |
| Lac9g2477 | 405 | SUPERFAMILY | Actin-like ATPase domain | 194 | 405 | IPR043129 | - | |
| Lac9g2477 | 405 | ProSitePatterns | Actins signature 1. | 55 | 65 | IPR004001 | - | |
| Lac9g2477 | 405 | FunFam | Major actin | 288 | 368 | - | - | |
| Lac9g2477 | 405 | Gene3D | Actin; Chain A, domain 2 | 34 | 74 | - | - | |
| Lac9g2477 | 405 | Gene3D | Actin; Chain A, domain 4 | 210 | 301 | - | - | |
| Lac9g2477 | 405 | Pfam | Actin | 194 | 405 | IPR004000 | - | |
| Lac9g2477 | 405 | Pfam | Actin | 5 | 151 | IPR004000 | - | |
| Lac9g2477 | 405 | CDD | NBD_sugar-kinase_HSP70_actin | 10 | 152 | - | - | |
| Lac9g2477 | 405 | PRINTS | Actin signature | 63 | 85 | IPR004000 | - | |
| Lac9g2477 | 405 | PRINTS | Actin signature | 51 | 62 | IPR004000 | - | |
| Lac9g2477 | 405 | PRINTS | Actin signature | 28 | 37 | IPR004000 | - | |
| Lac9g2477 | 405 | PRINTS | Actin signature | 142 | 161 | IPR004000 | - | |
| Lac9g2477 | 405 | PRINTS | Actin signature | 117 | 130 | IPR004000 | - | |
| Lac9g2477 | 405 | FunFam | Actin, muscle | 210 | 301 | - | - | |
| Lac9g2477 | 405 | Gene3D | - | 369 | 399 | - | - | |
| Lac9g2477 | 405 | PANTHER | ACTIN | 8 | 397 | IPR004000 | GO:0005737(PANTHER) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lac8g2989 | Lac-Chr8:46738864 | Lac9g2477 | Lac-Chr9:43622271 | 2.80E-83 | dispersed | |
| Lac9g0271 | Lac-Chr9:4360106 | Lac9g2477 | Lac-Chr9:43622271 | 4.40E-35 | dispersed | |
| Lac9g0272 | Lac-Chr9:4360476 | Lac9g2477 | Lac-Chr9:43622271 | 4.10E-116 | dispersed | |
| Lac9g2922 | Lac-Chr9:47033314 | Lac9g2477 | Lac-Chr9:43622271 | 6.20E-07 | transposed | |
| Lac1g2042 | Lac-Chr1:41970900 | Lac9g2477 | Lac-Chr9:43622271 | 1.90E-186 | wgd | |
| Lac8g2518 | Lac-Chr8:42999092 | Lac9g2477 | Lac-Chr9:43622271 | 7.20E-190 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lac9g2477 | K10355 | - | mdm:103443130 | 699.123 |