Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lac9g2481 | ATGGGGGAGGAGAACAATGGCGGCTCCTTTCGGAGTTTGATCGACTTGGTGAATGATATAGCTTCAATCTCAGATTATAGGTACGCGGTCAAAAAGCAGTATTGTAATCTAGCTAGGCGACTGAAGCTGTTGATCCCAATGTTTGAGGAGATGAGGGATATGAAGAAGCCGCTGCTGGATGATACCATCAGAGCTCTTGCTTCGTTGAAGAAAGCTCTAGAATCGACCAAGGAGTTGCTTAGAACTGGGAGCGAGGGGAGCAAGATTTGTCTGGCCTTGGAGAGAGAAAAGTTGTTGAATCAATTTCACGGGGTGACAGCAAGACTAGAGCAAGCTCTGAATGACATTTCACATGAAGATCTTGACATATCTGATGAAGTAAAGGAGCAGGTCGAGCTTGTTCTCTCTCAATTCAAAAAAGCTAAAGGAAGGATTGATACACAAGATACCGAGCTGTATGTTAACCTCCACTCTCTCTATAACAACAGCAAAGATTCTACTACTGATCCTTCTGTCTTAAAGGGACTGGCTGAGAAGTTGCAGTTAATGGATGTAGTTGATCTTACTCAAGAGTCTCTTGCTTTACATGAAATGGTTTCGGCTAGCGATGGTGATCCAGGGGGGAGATTTGAGAAAATGTCAATACTGTTGAAGAAAATAAAAGATTTTATGCTAACTGAAAACCCTGAGATTGGCGTTTCTTCAAAAGAACAAAGTCATCCTCGCATTGGTGGACAAGCGACTGCTGGGAAGAAAGATATAACGTCCCTTCACATACCTGAAGACTTTCGGTGCCCCATATCCCTAGATTTGATGAAAGATCCCGTCATTGTCTCCACGGGACAGACATACGAACGTACTTTCATTGAGAAGTGGCTGGCAGACGGACATTCAACATGCCCAAAAACTCAACAAGTCCTCACTAGCAAAACTCTTACGCCAAATTATGTTTTACGTAGTCTCATAGCTCAATGGTGCGAGGCCAATGGGGTTGAACCACCACAACGTTCCAGCAGTTCTCAGCCCAGTGAATTGATGACTCCTGCTGAACGCTCCAAGTATGAAACTCTTCTAAACAAACTCACATCAGGTAACATTGAAGACAAGCGATCTGCTGCTGGTGAGATTCGCCTTCTAGCCAAACGCAACGCAAACAATCGTGTGGCCATTGCTGAAGCTGGTGCAATCCCTCTTCTTGTCAGCCTCCTTTCAACAACGGACCCCTCACCCAAGAACATGCTGTGA | 1245 | 44.74 | MGEENNGGSFRSLIDLVNDIASISDYRYAVKKQYCNLARRLKLLIPMFEEMRDMKKPLLDDTIRALASLKKALESTKELLRTGSEGSKICLALEREKLLNQFHGVTARLEQALNDISHEDLDISDEVKEQVELVLSQFKKAKGRIDTQDTELYVNLHSLYNNSKDSTTDPSVLKGLAEKLQLMDVVDLTQESLALHEMVSASDGDPGGRFEKMSILLKKIKDFMLTENPEIGVSSKEQSHPRIGGQATAGKKDITSLHIPEDFRCPISLDLMKDPVIVSTGQTYERTFIEKWLADGHSTCPKTQQVLTSKTLTPNYVLRSLIAQWCEANGVEPPQRSSSSQPSELMTPAERSKYETLLNKLTSGNIEDKRSAAGEIRLLAKRNANNRVAIAEAGAIPLLVSLLSTTDPSPKNML | 414 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
9 | 43655656 | 43658644 | + | Lag0009968.1 | Lac9g2481 | 621407 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lac9g2481 | 414 | CDD | MLKL_NTD | 13 | 139 | - | - | |
Lac9g2481 | 414 | ProSiteProfiles | U-box domain profile. | 258 | 332 | IPR003613 | GO:0004842(InterPro)|GO:0016567(InterPro) | |
Lac9g2481 | 414 | FunFam | RING-type E3 ubiquitin transferase | 7 | 119 | - | - | |
Lac9g2481 | 414 | Gene3D | - | 9 | 119 | IPR036537 | GO:0007166(InterPro) | |
Lac9g2481 | 414 | Coils | Coil | 59 | 79 | - | - | |
Lac9g2481 | 414 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 256 | 332 | IPR013083 | - | |
Lac9g2481 | 414 | SUPERFAMILY | RING/U-box | 253 | 334 | - | - | |
Lac9g2481 | 414 | Pfam | Mixed lineage kinase domain-like N-terminal domain | 28 | 117 | IPR054000 | - | |
Lac9g2481 | 414 | Gene3D | - | 349 | 412 | IPR011989 | - | |
Lac9g2481 | 414 | Pfam | U-box domain | 259 | 329 | IPR003613 | GO:0004842(InterPro)|GO:0016567(InterPro) | |
Lac9g2481 | 414 | CDD | RING-Ubox_PUB | 260 | 312 | IPR045210 | - | |
Lac9g2481 | 414 | FunFam | RING-type E3 ubiquitin transferase | 256 | 332 | - | - | |
Lac9g2481 | 414 | SMART | Ubox_2 | 262 | 325 | IPR003613 | GO:0004842(InterPro)|GO:0016567(InterPro) | |
Lac9g2481 | 414 | SUPERFAMILY | ARM repeat | 355 | 408 | IPR016024 | - | |
Lac9g2481 | 414 | PANTHER | U BOX DOMAIN-CONTAINING | 30 | 407 | - | - | |
Lac9g2481 | 414 | Pfam | Armadillo/beta-catenin-like repeat | 383 | 409 | IPR000225 | GO:0005515(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lac13g0683 | Lac-Chr13:5210399 | Lac9g2481 | Lac-Chr9:43655656 | 3.80E-98 | dispersed | |
Lac8g2874 | Lac-Chr8:45883322 | Lac9g2481 | Lac-Chr9:43655656 | 4.10E-45 | dispersed | |
Lac9g0248 | Lac-Chr9:3993895 | Lac9g2481 | Lac-Chr9:43655656 | 1.20E-15 | dispersed | |
Lac9g1894 | Lac-Chr9:38710060 | Lac9g2481 | Lac-Chr9:43655656 | 2.50E-68 | dispersed | |
Lac9g2481 | Lac-Chr9:43655656 | Lac9g2738 | Lac-Chr9:45540783 | 5.90E-15 | dispersed | |
Lac4g2166 | Lac-Chr4:41312589 | Lac9g2481 | Lac-Chr9:43655656 | 1.40E-21 | transposed | |
Lac7g2706 | Lac-Chr7:46146918 | Lac9g2481 | Lac-Chr9:43655656 | 9.20E-143 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lac9g2481 | K27628 | - | csv:101221150 | 681.404 |