Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac9g2481 ATGGGGGAGGAGAACAATGGCGGCTCCTTTCGGAGTTTGATCGACTTGGTGAATGATATAGCTTCAATCTCAGATTATAGGTACGCGGTCAAAAAGCAGTATTGTAATCTAGCTAGGCGACTGAAGCTGTTGATCCCAATGTTTGAGGAGATGAGGGATATGAAGAAGCCGCTGCTGGATGATACCATCAGAGCTCTTGCTTCGTTGAAGAAAGCTCTAGAATCGACCAAGGAGTTGCTTAGAACTGGGAGCGAGGGGAGCAAGATTTGTCTGGCCTTGGAGAGAGAAAAGTTGTTGAATCAATTTCACGGGGTGACAGCAAGACTAGAGCAAGCTCTGAATGACATTTCACATGAAGATCTTGACATATCTGATGAAGTAAAGGAGCAGGTCGAGCTTGTTCTCTCTCAATTCAAAAAAGCTAAAGGAAGGATTGATACACAAGATACCGAGCTGTATGTTAACCTCCACTCTCTCTATAACAACAGCAAAGATTCTACTACTGATCCTTCTGTCTTAAAGGGACTGGCTGAGAAGTTGCAGTTAATGGATGTAGTTGATCTTACTCAAGAGTCTCTTGCTTTACATGAAATGGTTTCGGCTAGCGATGGTGATCCAGGGGGGAGATTTGAGAAAATGTCAATACTGTTGAAGAAAATAAAAGATTTTATGCTAACTGAAAACCCTGAGATTGGCGTTTCTTCAAAAGAACAAAGTCATCCTCGCATTGGTGGACAAGCGACTGCTGGGAAGAAAGATATAACGTCCCTTCACATACCTGAAGACTTTCGGTGCCCCATATCCCTAGATTTGATGAAAGATCCCGTCATTGTCTCCACGGGACAGACATACGAACGTACTTTCATTGAGAAGTGGCTGGCAGACGGACATTCAACATGCCCAAAAACTCAACAAGTCCTCACTAGCAAAACTCTTACGCCAAATTATGTTTTACGTAGTCTCATAGCTCAATGGTGCGAGGCCAATGGGGTTGAACCACCACAACGTTCCAGCAGTTCTCAGCCCAGTGAATTGATGACTCCTGCTGAACGCTCCAAGTATGAAACTCTTCTAAACAAACTCACATCAGGTAACATTGAAGACAAGCGATCTGCTGCTGGTGAGATTCGCCTTCTAGCCAAACGCAACGCAAACAATCGTGTGGCCATTGCTGAAGCTGGTGCAATCCCTCTTCTTGTCAGCCTCCTTTCAACAACGGACCCCTCACCCAAGAACATGCTGTGA 1245 44.74 MGEENNGGSFRSLIDLVNDIASISDYRYAVKKQYCNLARRLKLLIPMFEEMRDMKKPLLDDTIRALASLKKALESTKELLRTGSEGSKICLALEREKLLNQFHGVTARLEQALNDISHEDLDISDEVKEQVELVLSQFKKAKGRIDTQDTELYVNLHSLYNNSKDSTTDPSVLKGLAEKLQLMDVVDLTQESLALHEMVSASDGDPGGRFEKMSILLKKIKDFMLTENPEIGVSSKEQSHPRIGGQATAGKKDITSLHIPEDFRCPISLDLMKDPVIVSTGQTYERTFIEKWLADGHSTCPKTQQVLTSKTLTPNYVLRSLIAQWCEANGVEPPQRSSSSQPSELMTPAERSKYETLLNKLTSGNIEDKRSAAGEIRLLAKRNANNRVAIAEAGAIPLLVSLLSTTDPSPKNML 414
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 43655656 43658644 + Lag0009968.1 Lac9g2481 621407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac9g2481 414 CDD MLKL_NTD 13 139 - -
Lac9g2481 414 ProSiteProfiles U-box domain profile. 258 332 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Lac9g2481 414 FunFam RING-type E3 ubiquitin transferase 7 119 - -
Lac9g2481 414 Gene3D - 9 119 IPR036537 GO:0007166(InterPro)
Lac9g2481 414 Coils Coil 59 79 - -
Lac9g2481 414 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 256 332 IPR013083 -
Lac9g2481 414 SUPERFAMILY RING/U-box 253 334 - -
Lac9g2481 414 Pfam Mixed lineage kinase domain-like N-terminal domain 28 117 IPR054000 -
Lac9g2481 414 Gene3D - 349 412 IPR011989 -
Lac9g2481 414 Pfam U-box domain 259 329 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Lac9g2481 414 CDD RING-Ubox_PUB 260 312 IPR045210 -
Lac9g2481 414 FunFam RING-type E3 ubiquitin transferase 256 332 - -
Lac9g2481 414 SMART Ubox_2 262 325 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Lac9g2481 414 SUPERFAMILY ARM repeat 355 408 IPR016024 -
Lac9g2481 414 PANTHER U BOX DOMAIN-CONTAINING 30 407 - -
Lac9g2481 414 Pfam Armadillo/beta-catenin-like repeat 383 409 IPR000225 GO:0005515(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac13g0683 Lac-Chr13:5210399 Lac9g2481 Lac-Chr9:43655656 3.80E-98 dispersed
Lac8g2874 Lac-Chr8:45883322 Lac9g2481 Lac-Chr9:43655656 4.10E-45 dispersed
Lac9g0248 Lac-Chr9:3993895 Lac9g2481 Lac-Chr9:43655656 1.20E-15 dispersed
Lac9g1894 Lac-Chr9:38710060 Lac9g2481 Lac-Chr9:43655656 2.50E-68 dispersed
Lac9g2481 Lac-Chr9:43655656 Lac9g2738 Lac-Chr9:45540783 5.90E-15 dispersed
Lac4g2166 Lac-Chr4:41312589 Lac9g2481 Lac-Chr9:43655656 1.40E-21 transposed
Lac7g2706 Lac-Chr7:46146918 Lac9g2481 Lac-Chr9:43655656 9.20E-143 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac9g2481 K27628 - csv:101221150 681.404