Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac9g2501 ATGGAGGACAAGAAATCGAGAGCATCGCTTCTGTCGAACGATGTCCAAGACCGACTATGGCCGCAGGTGCTGCTCAAAGAGGCTTTGCACCGCCGTCTGCTCGGCCTGCAGTTGCTGCAGCACCACCTGCCCCCGCCGTCGCCGCCGCCGTGCCTAGGATTTCTGTTTACTCCATCGGTCGAATCAGACTGTTCTGTCCTAACTTCTTTTCTTGAAGTCGATTGCTCGTTCTTTTCGCCCTGGAATTGGAGCCCTAATTCACCACAAGATCGCGACGATGCAGCAAGATACCACCGCATGATTTTTCAACCGGATTCATTCTTCAGCGTAGATCAGTTTCCAGAACTGCACTTTGCCCAATTACCCTATCAGTCTCTCCCTCCTGAAGCCATCATTTTCGAAATTCGTCGCCGGAGAACCCTCGCCGGAACTCTACTGTCTCAAAACCCAGTAATCAACATACGTGAAGCGGTGGGCTCGGAGAAATTTGGGGGATGGTTCGTTCAACGAGGAACCTCCGTCTTTAGACAAAATTTCCATGAAGTTTTGATGCTTCTCCGCGTGAACAAAGGTTTTTGGATGACCAAGGGTCCTGGGAATGAAAATGATGCAAATTCAACTTTTGATAGCCCATCATTGTTAGACACAAAGCGGGCACATCACTGGTTTATAGATGGTTGTGAGGCACAGGTTTTCCCCAACAAGAAGCAAGCAATTCAAGCTCCAAATAGTAAAATGACTGGAACGCTGTCAAATATGAATGTTCTTCATTGGGAGCAGCATTCTGCTAATTATCAGTCTGTTTCACATCAACTTATTGGTCGCATATTTGGTCCTGAATCAGTAAGGTCTGCTGACTTTGATCTAACAAAAGAATCTTCTGTAATTTCTGATAATTTGGATCTCGGGAGAAAAGGTATGGAAGATCCATATGGAGAGGACGCATCTGTGGGGTTGTCTATATCTCATGGTATGGAGGATCCTGAAGCATCTCTTAGCTATGGAGGAATTAGAAAAGTGAAAATCAACCAGGTTAAAGATAATATACATAGTCTGCAACCATGTCTAAGAAGCAATTCTAATAGGGAAGATAGTGGTCAACTATCCATAGAAGGTTACTATAAGGAAATTGAAGCGGGTCTTGTATCTGTGGGATCAGCCTATATTAAGGAGGACGACAGTTTCAATTTGATGAATCAAACGTCCACTGATGGGGATCACCATATTGGGTTACTGGATCATAGTGAGAAGATGGATGGCAATGTTGTCTCCATTGATGATGATTACAGTAAGCGAGATCCAAATATAATCTCATTTGGTGGATTTCCTGATGACCAAGATATTATCTCTTTAGGCAGGACTCTTGGAAGCCATGACCCAGCATTCTACGAATCTTCATTCCAACCATCTGAAGCTGTTGGTGTCACAGAGTTGGAATCATCAAATTTTGATGTAGCTATAAGCACTACTCAGATAGCTAAGCAAAAGCCTGACATGTCACTGAAGAGTAGACCGGAATACAAAATGAGGAAAGAAGCTCCAAACAGCTTTCCTTCAAATGTTAGAAGTTTGATCTCAACCGGTATGCTCGATGGTGTGCCTGTGAAGTATGTTTCTGTAGCTAGAGAGGAGCTTCGTGGAATTATAAGGGGATCTGGCTATCTTTGTGGATGCCAATCTTGCAACTTTTCCAAGATGCTTAATGCCTATGAGTTTGAGCGGCATGCTGGCTGCAAAACAAAACACCCAAACAATCATATATACTTTGAGAATGGAAAGACTATTTATCAGATAGTACAAGAATTGAGAAGCACTCCGGAGAGCTTGTTGTTTGATACAATTCAAACCATCTTTGGTGCTCCTATCAATCAGAAATCTTTTCGGATTTGGAAAGAATCATTTCAAGCAGCTACCCGTGAGCTTCAGCGCATATATGGCAAGGATGAGCTTAACCTTTAG 1959 43.49 MEDKKSRASLLSNDVQDRLWPQVLLKEALHRRLLGLQLLQHHLPPPSPPPCLGFLFTPSVESDCSVLTSFLEVDCSFFSPWNWSPNSPQDRDDAARYHRMIFQPDSFFSVDQFPELHFAQLPYQSLPPEAIIFEIRRRRTLAGTLLSQNPVINIREAVGSEKFGGWFVQRGTSVFRQNFHEVLMLLRVNKGFWMTKGPGNENDANSTFDSPSLLDTKRAHHWFIDGCEAQVFPNKKQAIQAPNSKMTGTLSNMNVLHWEQHSANYQSVSHQLIGRIFGPESVRSADFDLTKESSVISDNLDLGRKGMEDPYGEDASVGLSISHGMEDPEASLSYGGIRKVKINQVKDNIHSLQPCLRSNSNREDSGQLSIEGYYKEIEAGLVSVGSAYIKEDDSFNLMNQTSTDGDHHIGLLDHSEKMDGNVVSIDDDYSKRDPNIISFGGFPDDQDIISLGRTLGSHDPAFYESSFQPSEAVGVTELESSNFDVAISTTQIAKQKPDMSLKSRPEYKMRKEAPNSFPSNVRSLISTGMLDGVPVKYVSVAREELRGIIRGSGYLCGCQSCNFSKMLNAYEFERHAGCKTKHPNNHIYFENGKTIYQIVQELRSTPESLLFDTIQTIFGAPINQKSFRIWKESFQAATRELQRIYGKDELNL 652
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 43743485 43748503 - Lag0009988.1 Lac9g2501 621427

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lac9g2501 652 Pfam Tify domain binding domain 547 602 IPR032308 -
Lac9g2501 652 PANTHER AUTOIMMUNE REGULATOR 189 636 - GO:0000977(PANTHER)|GO:0003682(PANTHER)|GO:0005634(PANTHER)|GO:0042393(PANTHER)|GO:0045944(PANTHER)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac9g2501 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac13g0962 Lac-Chr13:7982192 Lac9g2501 Lac-Chr9:43743485 6.20E-79 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lac2g1204 . 2 233 PHD Transcription Factor Family AT3G14980 64.7 7.7e-84 310.1
Lac10g3089 . 18 847 PHD Transcription Factor Family AT3G53680 53.7 7.0e-249 857.8
Lac13g0962 . 439 565 PHD Transcription Factor Family AT3G53680 55.1 6.5e-37 153.7
Lac9g2501 . 509 635 PHD Transcription Factor Family AT3G53680 53.9 1.1e-36 152.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004604 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 2 1 3 2 1 1 2 1 1 1 1 1 2 4 3 42