Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac9g2521 ATGGATTGTAGAAGAAGATTTGGATTACTCTTCTGGGGTTTGTTTATTTCGTTGCTGCCTTGCATTTCTTGTTTGTTTAATCCGGTGGATAATTATCTTATTGACTGTGGATCGCCTGTAAATGTCTCGGTGGGTAGTCGTGTTTTCATGGCTGATAGTTTGGCCTCAAACTTGCTTTCCAACACACAAGCCATTCTGGCTAATACGTCTTCAGTACCTGCCTCTTCTTCTAATGATTCGTCGCTGTTTGAAACGGCTAGAGTCTTTACTGGAACATCAAGATTCAGGTTTCCAATCAAACAGGCTGGAAGGCACTGGATTCGTCTCTATTTCTATCCATTTGTGTTTTCTGGCTTCAATATGAGTGCTGCAAATTTTAGTGTTTCCACCCAAAACTTTGTTCTGCTGAGAGATTTGGTTGTAGAGAAGAATCCTGTGGTCAAAGAATTCTCTGTGAATGTAGAAGATACTCTTGAAGTTATCTTTGCTCCTGTTAATGGCTCCATTGCATATGTGAATGCCATTGAAGTTGTTTCTGTTCCTGACATTCTCATCGCTGATGAAGCCAATGTGTTAGAACCAGCTGGTAAAATTCAAGGGCTGACTACTCTGGCATATGAGACAGTTGCTAGGGTTAATATGGGTGGGCCAAAAGTTGCTCCCGATGGTGATCCTCTTTCACGAAATTGGGTTTCTGATGAAAGCTTTCTAGTTAATAAGAATTTTGCAACAAGTTTCTCTAACATTCCAGCTGTTAAATACAGCCCTGAAGGGGCAGCACCGGAGATTGCTCCAAAGGCTGTCTATGGTACCCTCACCGAGATGAACTCGAAGGATGATCCGAACAGCAATTTCAATGTGACGTGGCGGTTTAAAGTAGATCCTGGGTTTCAGTACCTTGTTCGGTTTCACTTCTGTGACATTGTGAGTAAATCTCTACACCAACTTTATTTCAATGTTTACATTGACTCGTGGTTGGTTTCTCGGGATCTAGATCTTAGTGTTCCTCTCAGTAATGCCCTGGGCGCTCCCTACTATATGGACTCTGTTACAGGATTGATCAAGAATGACATACTTCTTGTGAGTATTGGCCCAGCAAACTTAGCCAGTGTGTATCCAAATGCCATTCTAAATGGTCTGGAAGTCATGAAAATGAACAACTCTGTTGGCAGCCTTAGTGGGGAAGACTCTGTAATTAGTTTTCCAGGCTCAACTTCTTCAAGTAAGCATGTTGGCGTCATTGTGGGTGTGAGCGTTGGGGCATTTGTTGCAGCTATGTTGGTTGGCATTCTTTTTATGTTGCACAGACGAAAAAGAAAGGGAATGCATCAAGCTCCATCAAAAACGTGGATTTCAATATCCACTGCTGGAGGAATGTCACACACTATGGGAAGTAAATACTCAAATGGCACAATCACGAGTGCTGCTTCCAACTATGGGCATCGTATACCTTTTGCAACAGTTCAAGAGGCTACAAATAACTTTGATGAGAGCCGGGTCATTGGTATTGGTGGGTTCGGGAAAGTATACAAAGGAGTTTTAAATGATGGCACCAAAGTTGCTGTGAAGAGGGGTAACCCACGTTCCCAACAAGGACAGGCAGAGTTTCAAACTGAAATTGAGATGCTATCACAGTTCCGTCATCGCCATCTGGTTTCATTGATTGGGCACTGTGATGAAAGGAATGAGATGATACTGGTTTACGAGTATATGGAACAGGGGACCCTGAAGAGTCATCTATACGGTTCTGATTTCCCTAGTTTGAGCTGGAAGGAGAGACTGGAGGTTTGCATCGGAGCCGCTAGAGGACTTCATTACCTCCACACTGGTTATGCTAAACCAGTTATTCATCGTGATGTGAAGTCTGCCAACATTTTACTCGATGAAAATCTCATGGCGAAGGTTGCTGACTTTGGTCTTTCAAAGACAGGTCCTGAAATTGATCAAACCCATGTCAGTACAGCTGTGAAAGGAAGTTTTGGGTACCTCGATCCTGAATATTTCAGGAGGCAACAACTGACTGAGAAATCAGATGTTTATTCTTTTGGAGTTGTTTTGTTTGAAGTCCTTTGTGCAAGACCTGTCATAGATCCAACCCTTCCGAGAGACAGGGTAAACTTAGCTGAATGGGCAATGAAATGGCAGAAGAGAGGGCAGTTGGACCAAATCATTGATTCTACTCTAGTAGGAAAAATTAGACCAACTTCTCTTAGGAAGTTTGGAGAAACTGCTGAAAAATGCTTAGCTGACTACGGAGTCGACAGGCCATCTATGGGAGACGTGTTATGGAATTTGGAGTACGCGCTTCAGCTACAAGAAGCCGTTATTGAAGTTGATCCGGAAGATAACAGTACAAATATGATCGGCGAGCTCTCTCCACAAATTAACAATTTCAATGATATTGAGACAAGTGCTTCTGCCACACGGTTCGACATTCCAGGTGTGGATGATCTTTCTGGAGTCTCCATGAGCAGGGTGTTCTCTCAGCTGGTGAAATCTGAGGGTAGATGA 2511 43.05 MDCRRRFGLLFWGLFISLLPCISCLFNPVDNYLIDCGSPVNVSVGSRVFMADSLASNLLSNTQAILANTSSVPASSSNDSSLFETARVFTGTSRFRFPIKQAGRHWIRLYFYPFVFSGFNMSAANFSVSTQNFVLLRDLVVEKNPVVKEFSVNVEDTLEVIFAPVNGSIAYVNAIEVVSVPDILIADEANVLEPAGKIQGLTTLAYETVARVNMGGPKVAPDGDPLSRNWVSDESFLVNKNFATSFSNIPAVKYSPEGAAPEIAPKAVYGTLTEMNSKDDPNSNFNVTWRFKVDPGFQYLVRFHFCDIVSKSLHQLYFNVYIDSWLVSRDLDLSVPLSNALGAPYYMDSVTGLIKNDILLVSIGPANLASVYPNAILNGLEVMKMNNSVGSLSGEDSVISFPGSTSSSKHVGVIVGVSVGAFVAAMLVGILFMLHRRKRKGMHQAPSKTWISISTAGGMSHTMGSKYSNGTITSAASNYGHRIPFATVQEATNNFDESRVIGIGGFGKVYKGVLNDGTKVAVKRGNPRSQQGQAEFQTEIEMLSQFRHRHLVSLIGHCDERNEMILVYEYMEQGTLKSHLYGSDFPSLSWKERLEVCIGAARGLHYLHTGYAKPVIHRDVKSANILLDENLMAKVADFGLSKTGPEIDQTHVSTAVKGSFGYLDPEYFRRQQLTEKSDVYSFGVVLFEVLCARPVIDPTLPRDRVNLAEWAMKWQKRGQLDQIIDSTLVGKIRPTSLRKFGETAEKCLADYGVDRPSMGDVLWNLEYALQLQEAVIEVDPEDNSTNMIGELSPQINNFNDIETSASATRFDIPGVDDLSGVSMSRVFSQLVKSEGR 836
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 43902846 43905356 + Lag0010008.1 Lac9g2521 621447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac9g2521 836 FunFam receptor-like protein kinase FERONIA 459 570 - -
Lac9g2521 836 FunFam Receptor-like protein kinase FERONIA 205 387 - -
Lac9g2521 836 SMART serkin_6 495 768 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac9g2521 836 Pfam Malectin-like domain 34 384 IPR024788 -
Lac9g2521 836 ProSiteProfiles Protein kinase domain profile. 495 768 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac9g2521 836 Gene3D - 31 180 - -
Lac9g2521 836 Gene3D - 204 387 - -
Lac9g2521 836 PANTHER OS07G0166700 PROTEIN 482 773 IPR045272 GO:0004672(PANTHER)|GO:0004714(InterPro)|GO:0005886(PANTHER)|GO:0006468(InterPro)|GO:0009506(PANTHER)|GO:0046777(PANTHER)
Lac9g2521 836 CDD STKc_IRAK 501 766 - -
Lac9g2521 836 FunFam Putative receptor-like protein kinase 31 181 - -
Lac9g2521 836 Gene3D Transferase(Phosphotransferase) domain 1 571 788 - -
Lac9g2521 836 Gene3D Phosphorylase Kinase; domain 1 458 570 - -
Lac9g2521 836 ProSitePatterns Serine/Threonine protein kinases active-site signature. 615 627 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac9g2521 836 Pfam Protein tyrosine and serine/threonine kinase 498 691 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac9g2521 836 ProSitePatterns Protein kinases ATP-binding region signature. 501 523 IPR017441 GO:0005524(InterPro)
Lac9g2521 836 SUPERFAMILY Protein kinase-like (PK-like) 472 766 IPR011009 -
Lac9g2521 836 FunFam Receptor-like protein kinase FERONIA 571 786 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac12g1651 Lac-Chr12:31833434 Lac9g2521 Lac-Chr9:43902846 5.60E-62 dispersed
Lac13g0863 Lac-Chr13:7023703 Lac9g2521 Lac-Chr9:43902846 2.50E-222 dispersed
Lac1g2614 Lac-Chr1:47503642 Lac9g2521 Lac-Chr9:43902846 4.30E-166 dispersed
Lac3g0593 Lac-Chr3:4607524 Lac9g2521 Lac-Chr9:43902846 7.90E-212 dispersed
Lac5g2969 Lac-Chr5:47705231 Lac9g2521 Lac-Chr9:43902846 1.70E-191 dispersed
Lac6g2785 Lac-Chr6:45561095 Lac9g2521 Lac-Chr9:43902846 2.30E-159 dispersed
Lac8g2758 Lac-Chr8:44901004 Lac9g2521 Lac-Chr9:43902846 1.50E-113 dispersed
Lac9g0018 Lac-Chr9:294240 Lac9g2521 Lac-Chr9:43902846 5.70E-68 dispersed
Lac9g1276 Lac-Chr9:29473805 Lac9g2521 Lac-Chr9:43902846 2.00E-131 dispersed
Lac9g2521 Lac-Chr9:43902846 Lac6g0091 Lac-Chr6:781329 9.00E-63 dispersed
Lac9g2521 Lac-Chr9:43902846 Lac4g2841 Lac-Chr4:47036274 4.30E-198 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86464 PF12819 Malectin_like 1.70E-30 CL0202 Lac PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac9g2521 - - - 0.0