Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac9g2534 ATGGAACCGTTGGATAAACCACTGCCAAAGTCCTCGCCTCTCGCGCCATTTCCTCGGGACTCTCGAGGATCGCTCGAGGTTTTCAATCCCTCGGCCACTTACTCGTCCCGATCGATCAACTCCGTTTCTCGGCCGAACCCGGCGTGGCCGAATTGGGTGGAGCCACGTAGCAGCGGGGAGTCGGAGTCGGCCAGAGTCGGCGCCAAAACGACGAGTAAATCCGGCGAGGAGATTACGTCATGGATGGCCTTCAAGGACTCGAACCCTTCACCACAACCGACCTCGCCGCTCGCTCAGAAGACAATCTCGGCGATTCTCAGCGACAAATCGCCGCCGAAATCGGCGGACGAAGTCGGCTCTGCCGCCCTACGCGCCGCCGAGTGGGGATTGGTGTTGAAAACCGATACGGAGACTGGGAAGCCACAGGGCGTCGGAGTTCGAACTTCCGGCGGCGATGAACCGAATTCCAAACAGGAGCATTCGAGAAGAACTTCGAATAACTCGGTGCGGAGTTCGGGCGACATGTCGGACGATGGGGCAAGAGAAAGGGGGATTCCGAGAGTCTCTGAGGATTTGAAAGACGCTCTGTCGACATTCCAACAAACATTTGTGGTTTCTGATGCTACGAAACCTGATTATCCGATTATGTACGCCAGTGCTGGATTCTTCAAAATGACTGGCTATACTTCCAAGGAGGTTATCGGAAGAAATTGTCGATTTTTACAGGGTGCAGATACAGACCCAGAAGATGTGGCTAAGATCCGAGAAGCTTTACAAGCGGGGACGAGTTACTGTGGGAGGTTGTTGAATTACAAGAAAGATGGGACCCCTTTTTGGAATTTACTTACTATTTCACCAATCAAAGATGATGATGGCAAAGTTCTCAAATTTATTGGAATGCAAGTGGAGGTGAGCAAACACACAGAGGGCTTCAAAGATAAGATGGTCCGTCCCAATGGGTTGCCAGAATCCTTGATTCGTTATGATGCCCGTCAAAAGGATATGGCTACCAGTTCGGTGACGGAGATCGTGCAAGCGGTGAAGAGGCCTCGGTCTGTAAGTGAATATAGGCCTCGGGCTCTAAGTGAATCTATGAACCGCCGATTAGTTAGAAAATCCGGCGGCGGCGGCGGCGTCGGCGGCGGCGATGAGGAGGTTAGATTTGAAGCGACTATGGTTAGGCGAAAGTCAGAGAGTGCAGCAGTTTCAACTGGACGAAAATCACATGGAGGAAGTAGAAGGTCGATGCAGCGTATCAGTGAGCTGCCGGAGAAGAAACCCAAAAGGTTTAGCCGTCGTTCATTTATGGGGATTATGAGGAAAAGTCAATCCAATGTTGAAACCTTTGATATTGAAGATGGTTCCGATGATGATAATGAGACCGATGAGGACGAGAGACCGGATAGCGTTGACGACAAAGTAAGGCAGAGGGAAATGAGGAAAGGTATTGATTTAGCTACTACCCTCGAACGTATAGAGAAAAACTTCGTCATTACCGATCCTAGATTGCCCGACAATCCCATTATTTTTGCTTCTGATAGCTTCCTGGAGCTAACCGAGTACAGTAGAGAAGAAATTTTGGGAAGAAATTGCAGGTTTTTGCAAGGTCCTGAAACTGATCGAGCAACCGTCAAGAAAATAAGAGATGCAATCGACAACCAAACAGAAGTTACAGTGCAGCTTATAAACTACACGAAAAGCGGTAAAAAGTTTTGGAACCTGTTTCATCTACAACCTATGCGTGACCAGAAGGGAGAAGTTCAGTATTTTATTGGAGTACAACTTGATGGTAGTCAGCACGTGGAACCGCTAAGCAATTGCATACCGGACAATACTGCAAAAGAGGGTGAAAAATTGGTAAAAGAAACTGCAGAAAACGTTGATTTGGCGGCTAGAGAACTTCCCGATGCCAATTTGACACCAGAAGATTTATGGGCTAATCATTCTAAGGTGGTTCAACCGAAACCCCACAGAAAGGATAGTCCTTCTTGGAAAGCTATCCAGCTGATTATAGACAGCGGAGAGCAGATAGGACTGAAACATTTCAAGCCAATTAAACCATTGGGATCGGGTGATACTGGCAGTGTGCATTTGGTAGAACTGTGTGGGACTGATCAGTATTTTGCAATGAAGGCTATGGATAAGGGTGTTATGCTTAACCGCAACAAGGTACATAGAGCTTGCGCCGAGAGGGAAATACTTGACATGTTGGATCATCCCTTTCTTCCTGCATTATATGCTTCATTTCAGACAAAAACACATGTTTGTCTTATAACTGATTACTGTCCTGGTGGAGAACTCTTTCTGCTTTTGGACAGACAACCTACAAAGGTCTTAAAGGAAGATGCTGTAAGGTTTTATGCTGCTGAAGTTGTCGTCGCATTGGAGTATCTTCATTGTCAAGGGATAATTTACCGGGATTTGAAGCCTGAGAATGTTCTACTCCAGGGCAATGGACACGTGGCCTTAACGGATTTTGACTTGTCGTGTTTGACTTCTTGCAAACCTCAGCTTTTGCTTCCAACGGCAAATGAGAAGAAAAAGCAAACAAGAGCTCAACAGGCTCCAATATTTATGGCTGAACCTATGCGAGCATCGAACTCATTCGTTGGAACTGAAGAGTACATAGCACCGGAAATCATTACCGGGGCTGGCCATACCAGTGCAGTGGACTGGTGGGCTTTGGGTATCCTTCTATATGAGATGCTCTATGGATACACACCCTTTAGGGGGAAGACAAGGCAAAAAACTTTTGCCAACATTCTTCATAAGGATCTTAAATTTCCGAGAAGTATATCGGCTAGTCTCAATGCAAAGCAGTTAATCTTTAGGTTATTGCATAGAGATCCGAAAAACCGATTGGGTTCTCGAGAAGGAGCTAGTGAAATCAAACGACATCCTTTCTTTCGAGGCGTCAATTGGGCACTCGTTCGTTGCATGAATCCTCCCGAGCTCGAAGCGCCTCTTTTCCAGACCACCGATGCCGAAAAAGATGCGAACAAGGCATCAGATTTTGATCTAAAAGATCTTGAACTCAGTGTTTTCTGA 3048 46.88 MEPLDKPLPKSSPLAPFPRDSRGSLEVFNPSATYSSRSINSVSRPNPAWPNWVEPRSSGESESARVGAKTTSKSGEEITSWMAFKDSNPSPQPTSPLAQKTISAILSDKSPPKSADEVGSAALRAAEWGLVLKTDTETGKPQGVGVRTSGGDEPNSKQEHSRRTSNNSVRSSGDMSDDGARERGIPRVSEDLKDALSTFQQTFVVSDATKPDYPIMYASAGFFKMTGYTSKEVIGRNCRFLQGADTDPEDVAKIREALQAGTSYCGRLLNYKKDGTPFWNLLTISPIKDDDGKVLKFIGMQVEVSKHTEGFKDKMVRPNGLPESLIRYDARQKDMATSSVTEIVQAVKRPRSVSEYRPRALSESMNRRLVRKSGGGGGVGGGDEEVRFEATMVRRKSESAAVSTGRKSHGGSRRSMQRISELPEKKPKRFSRRSFMGIMRKSQSNVETFDIEDGSDDDNETDEDERPDSVDDKVRQREMRKGIDLATTLERIEKNFVITDPRLPDNPIIFASDSFLELTEYSREEILGRNCRFLQGPETDRATVKKIRDAIDNQTEVTVQLINYTKSGKKFWNLFHLQPMRDQKGEVQYFIGVQLDGSQHVEPLSNCIPDNTAKEGEKLVKETAENVDLAARELPDANLTPEDLWANHSKVVQPKPHRKDSPSWKAIQLIIDSGEQIGLKHFKPIKPLGSGDTGSVHLVELCGTDQYFAMKAMDKGVMLNRNKVHRACAEREILDMLDHPFLPALYASFQTKTHVCLITDYCPGGELFLLLDRQPTKVLKEDAVRFYAAEVVVALEYLHCQGIIYRDLKPENVLLQGNGHVALTDFDLSCLTSCKPQLLLPTANEKKKQTRAQQAPIFMAEPMRASNSFVGTEEYIAPEIITGAGHTSAVDWWALGILLYEMLYGYTPFRGKTRQKTFANILHKDLKFPRSISASLNAKQLIFRLLHRDPKNRLGSREGASEIKRHPFFRGVNWALVRCMNPPELEAPLFQTTDAEKDANKASDFDLKDLELSVF 1015
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 43988050 43998792 - Lag0010021.1 Lac9g2534 621460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac9g2534 1015 CDD PAS 215 304 IPR000014 -
Lac9g2534 1015 PANTHER FLIPPASE KINASE 1-RELATED 634 992 - GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER)
Lac9g2534 1015 Gene3D Transferase(Phosphotransferase) domain 1 766 992 - -
Lac9g2534 1015 SUPERFAMILY PYP-like sensor domain (PAS domain) 497 596 IPR035965 -
Lac9g2534 1015 MobiDBLite consensus disorder prediction 26 47 - -
Lac9g2534 1015 ProSitePatterns Serine/Threonine protein kinases active-site signature. 803 815 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac9g2534 1015 FunFam LOV domain-containing protein 681 765 - -
Lac9g2534 1015 Gene3D Phosphorylase Kinase; domain 1 681 996 - -
Lac9g2534 1015 FunFam Putative LOV domain-containing protein 202 358 - -
Lac9g2534 1015 FunFam Putative LOV domain-containing protein 766 981 - -
Lac9g2534 1015 Gene3D PAS domain 202 357 - -
Lac9g2534 1015 NCBIfam PAS domain S-box protein 215 307 IPR000014 -
Lac9g2534 1015 NCBIfam PAS domain S-box protein 506 596 IPR000014 -
Lac9g2534 1015 ProSiteProfiles PAC domain profile. 262 316 IPR000700 -
Lac9g2534 1015 SUPERFAMILY PYP-like sensor domain (PAS domain) 209 301 IPR035965 -
Lac9g2534 1015 CDD STKc_phototropin_like 680 988 - -
Lac9g2534 1015 ProSiteProfiles PAS repeat profile. 485 554 IPR000014 -
Lac9g2534 1015 MobiDBLite consensus disorder prediction 133 182 - -
Lac9g2534 1015 Pfam Protein kinase domain 685 969 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac9g2534 1015 SMART pac_2 558 600 IPR001610 -
Lac9g2534 1015 SMART pac_2 265 307 IPR001610 -
Lac9g2534 1015 ProSiteProfiles PAC domain profile. 555 609 IPR000700 -
Lac9g2534 1015 ProSiteProfiles Protein kinase domain profile. 682 969 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac9g2534 1015 SMART pas_2 483 552 IPR000014 -
Lac9g2534 1015 SMART pas_2 190 259 IPR000014 -
Lac9g2534 1015 Gene3D PAS domain 469 634 - -
Lac9g2534 1015 SMART serkin_6 682 969 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac9g2534 1015 Pfam PAS domain 504 596 IPR000014 -
Lac9g2534 1015 Pfam PAS domain 209 305 IPR000014 -
Lac9g2534 1015 ProSitePatterns Protein kinases ATP-binding region signature. 688 711 IPR017441 GO:0005524(InterPro)
Lac9g2534 1015 MobiDBLite consensus disorder prediction 450 467 - -
Lac9g2534 1015 MobiDBLite consensus disorder prediction 392 477 - -
Lac9g2534 1015 MobiDBLite consensus disorder prediction 1 120 - -
Lac9g2534 1015 SUPERFAMILY Protein kinase-like (PK-like) 659 990 IPR011009 -
Lac9g2534 1015 FunFam LOV domain-containing protein 470 634 - -
Lac9g2534 1015 MobiDBLite consensus disorder prediction 63 108 - -
Lac9g2534 1015 CDD PAS 496 596 IPR000014 -
Lac9g2534 1015 ProSiteProfiles PAS repeat profile. 188 259 IPR000014 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac12g0426 Lac-Chr12:4741509 Lac9g2534 Lac-Chr9:43988050 3.30E-236 dispersed
Lac13g0280 Lac-Chr13:2008006 Lac9g2534 Lac-Chr9:43988050 3.40E-52 dispersed
Lac6g0317 Lac-Chr6:2595096 Lac9g2534 Lac-Chr9:43988050 1.80E-48 dispersed
Lac9g2534 Lac-Chr9:43988050 Lac9g2687 Lac-Chr9:45166135 1.30E-95 dispersed
Lac9g2534 Lac-Chr9:43988050 Lac9g1924 Lac-Chr9:39021580 0.00E+00 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86465 PF00069 Pkinase 8.50E-63 CL0016 Lac PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac9g2534 K20715 - csv:101214662 1831.22