Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac9g2536 ATGGGTTGCTTTCGCTACAGCAGAAAACAGAGGAAAAGATTAGAGGGCAATGGGCCAAGTATTCTACCAGCTTCTTCAGCTGTTACAGAAACAGTAAAAGTAAAGGTGAATTTGAATGTGAAAACAGGCGAAGAAGTAAAGGAGGTGGTGAGTGAAGATGAGCAGCTGGCGTCAAATATAAACAGAGAGTTTTCCAGGAAAGCAAAAACAAACGAAAAGATAGAAACATTTACATTCCACGAACTTGCAGCAGCGACAAAAAATTTCAAGTCAGATTGCTTTGTGGGCGAAGGGGGATTTGGTAAAGTTTACAAGGCCAATTTGAGAAGAATCAACCAGCTTGTAGCTATCAAGCAACTTGACCACAATGGGAGTCAAGGTGTAAGAGAATTCGTGGTGGAAGTGTTGACGTTAAGTTTGGCCAATCACCCAAATCTCGTAAAATTGATAGGCTATTGTGCAGACGGGAACGAAAGGCTGTTGGTTTATGAGTTCATGCCATTGGGATCACTCGACAAACATTTGTATGACATTTCACCGGGCCAAAAAGCGCTTGATTGGAATACAAGAATGAAGATAGCAGTCGGTGCAGCAAGGGGATTGGAGTACTTGCACAACCAAATGAGACCTGCAGTTATATATCGAGATCTAAAATGTTCAAATATTTTGCTTGGTGAAGGGTATTGGCCTAAGCTCTCAGATTTTGGTCTAGCCAAAGTAGGACCTAGTGGAGATAACACACATGTTTCTACTAGAGTTATGGGAACATATGGATATTGTGCACCGGATTATGCAATGACGGGTCAATTGACATTCAAAAGTGATATCTATAGCTTTGGAGTTGTTCTCCTGGAGCTCATCACAGGAAGAAAAGCCATCGACTATACAAGGCCTCAAAAAGAACTAAGTTTGGTACAATGGGCAAGACCGTTGTTTCGAGATCGAAAGAGTTTCTTGTTAATGGCAGACCCGAGACTCGAAGGTCAATATCCTACGAGAGGATTGTACCAATCTCTTGCCATTGCATCAATGTGTCTCCAAGAGCAACCTGCTATGAGGCCGGTAATATCAGAAGTGGTCGCTGCTCTAAATTTCCTTGCTTCCCAAAATTATATCGGAAGGAGGAATTAG 1131 42.09 MGCFRYSRKQRKRLEGNGPSILPASSAVTETVKVKVNLNVKTGEEVKEVVSEDEQLASNINREFSRKAKTNEKIETFTFHELAAATKNFKSDCFVGEGGFGKVYKANLRRINQLVAIKQLDHNGSQGVREFVVEVLTLSLANHPNLVKLIGYCADGNERLLVYEFMPLGSLDKHLYDISPGQKALDWNTRMKIAVGAARGLEYLHNQMRPAVIYRDLKCSNILLGEGYWPKLSDFGLAKVGPSGDNTHVSTRVMGTYGYCAPDYAMTGQLTFKSDIYSFGVVLLELITGRKAIDYTRPQKELSLVQWARPLFRDRKSFLLMADPRLEGQYPTRGLYQSLAIASMCLQEQPAMRPVISEVVAALNFLASQNYIGRRN 376
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 44009260 44012743 - Lag0010023.1 Lac9g2536 621462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac9g2536 376 PANTHER OS07G0668900 PROTEIN 55 372 - -
Lac9g2536 376 Gene3D Phosphorylase Kinase; domain 1 58 165 - -
Lac9g2536 376 FunFam probable serine/threonine-protein kinase RLCKVII 61 165 - -
Lac9g2536 376 ProSiteProfiles Protein kinase domain profile. 89 366 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac9g2536 376 FunFam Serine/threonine-protein kinase PBS1 166 376 - -
Lac9g2536 376 ProSitePatterns Serine/Threonine protein kinases active-site signature. 212 224 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac9g2536 376 ProSitePatterns Protein kinases ATP-binding region signature. 95 118 IPR017441 GO:0005524(InterPro)
Lac9g2536 376 SUPERFAMILY Protein kinase-like (PK-like) 74 368 IPR011009 -
Lac9g2536 376 SMART serkin_6 89 366 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac9g2536 376 Pfam Protein tyrosine and serine/threonine kinase 94 361 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac9g2536 376 CDD STKc_IRAK 95 364 - -
Lac9g2536 376 Gene3D Transferase(Phosphotransferase) domain 1 166 373 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac7g2600 Lac-Chr7:44399152 Lac9g2536 Lac-Chr9:44009260 4.50E-150 dispersed
Lac9g2536 Lac-Chr9:44009260 Lac9g2933 Lac-Chr9:47120597 3.90E-74 dispersed
Lac10g3058 Lac-Chr10:45061822 Lac9g2536 Lac-Chr9:44009260 5.20E-133 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86466 PF00069 Pkinase 5.20E-42 CL0016 Lac PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac9g2536 - - - 0.0