Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac9g2541 ATGTTTGATCTTAATCTCAATGTCGACTCGCCTGATGCGACTCAGAATGAGGACTCCGTCGTGTTCTTTGAGAAGCTTCCTCAAGGCTCGGGGAACCAAATGGATGAATCAGGAACTTCCAATTCTTCGATTGTCAATGCGGATACCTCCAGCAATGGCGGCGATGATGACTCGTGCTCCACACGCGCCGGTGGCGAGCTCTTCACATTCAACTTCGAGATATTGAAGGCCGGAAGCGCGAACGACGTTGCCACGAAGGAGTTTTTCCCGATAGGTGGAACGGTGAATGCTGACTTTGGGATTCTTCAGGGGCATAACTCGGCCTCTTCTTCTTCTTCTTCATCGAGGAAGAACTGGATCAACCTTGCGTTTGATCGAAGCGGTTCAGCAGGGGAGGGGAGAATGGTTCAGCAAGTTCAGCCTCAGCCGGTGAAGAAGAGCAGGAGGGGACCGAGGTCTCGGAGTTCGCAGTACAGAGGCGTCACATTCTATCGGAGGACTGGGCGGTGGGAATCTCATATTTGGGACTGCGGAAAGCAGGTCTATCTCGGTGGATTCGACACTGCTCATTCTGCAGCAAGAGCATATGATCGAGCTGCTATCAAGTTTAGAGGGGTCGACGCTGACATTAATTTCAATCTTAGTGATTATGAGGAAGATCTGAAACAGATGAAGAATTTAAGCAAGGAAGAGTTTGTTCACATACTTCGTCGCCAGAGCACTGGTTTCTCAAGGGGGAGCTCAAAATATAGAGGGGTGACTCTGCACAAATGTGGCCGATGGGAAGCTAGAATGGGGCAGCTCCTTGGGAAAAAGTATATATATCTTGGGCTGTTCGACAGCGAGGTAGAAGCTGCAAGGGCTTATGACAAGGCAGCAATCAAATGTAATGGGCGGGAGGCAGTAACCAACTTTGAGCCTAGCACATACGAAGGAGAGAGAATTTCTGAGGGCAGCAGTAAAGGTGGCCGGAACATGCTTGACTTGAATCTAGGAATTTCACCCCCCTCACTTGACAACTGTTCAAAGGATAATGAGGGGCATCTGCGATTCCAATCCGGACGTTATGCTAATGACAGGAGCACAATGATGGAGAGCAATGCTGATGCAGCAGTTGGCGATCCACCTTTGAAAGGACTGGTAATGACATCAGAGCATGCTCCCTTATGGAACGGTTTACAATCTAGCTTCTTTCCCAGTGAGGAAAGCGTGACAGAGAAGAGACTTGCATTAGGTTCGTCCCAAGGAGTCCCCAACTGGGCATGGCAAATTCATGGCCAGGTTAATGCCACCCAAGTGCCACTGTTCTCTGCTGCAGCATCATCAGGATTCTCATTTTCAGCTACCCATTTCCCGGCTGCCATCCATCCATCGCGCCAACCGGGGTCGATCGCCCACAATCTCCATTTCACTTCTGCCAAAGCTTCCCTCACCTCCCCTCAGTACCACCACCAGTTGAACCCACAACAGGCACCACCATAA 1482 50.2 MFDLNLNVDSPDATQNEDSVVFFEKLPQGSGNQMDESGTSNSSIVNADTSSNGGDDDSCSTRAGGELFTFNFEILKAGSANDVATKEFFPIGGTVNADFGILQGHNSASSSSSSSRKNWINLAFDRSGSAGEGRMVQQVQPQPVKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHSAARAYDRAAIKFRGVDADINFNLSDYEEDLKQMKNLSKEEFVHILRRQSTGFSRGSSKYRGVTLHKCGRWEARMGQLLGKKYIYLGLFDSEVEAARAYDKAAIKCNGREAVTNFEPSTYEGERISEGSSKGGRNMLDLNLGISPPSLDNCSKDNEGHLRFQSGRYANDRSTMMESNADAAVGDPPLKGLVMTSEHAPLWNGLQSSFFPSEESVTEKRLALGSSQGVPNWAWQIHGQVNATQVPLFSAAASSGFSFSATHFPAAIHPSRQPGSIAHNLHFTSAKASLTSPQYHHQLNPQQAPP 493
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 44060890 44064136 - Lag0010028.1 Lac9g2541 621467
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac9g2541 493 FunFam AP2-like ethylene-responsive transcription factor 156 215 - -
Lac9g2541 493 Pfam AP2 domain 157 205 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac9g2541 493 Pfam AP2 domain 248 298 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac9g2541 493 CDD AP2 157 215 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac9g2541 493 SMART rav1_2 157 219 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac9g2541 493 SMART rav1_2 249 312 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac9g2541 493 MobiDBLite consensus disorder prediction 30 58 - -
Lac9g2541 493 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 84 342 - -
Lac9g2541 493 FunFam AP2-like ethylene-responsive transcription factor 248 308 - -
Lac9g2541 493 MobiDBLite consensus disorder prediction 28 58 - -
Lac9g2541 493 SUPERFAMILY DNA-binding domain 156 214 IPR016177 GO:0003677(InterPro)
Lac9g2541 493 SUPERFAMILY DNA-binding domain 248 307 IPR016177 GO:0003677(InterPro)
Lac9g2541 493 PRINTS Ethylene responsive element binding protein signature 288 308 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac9g2541 493 PRINTS Ethylene responsive element binding protein signature 250 261 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac9g2541 493 CDD AP2 248 308 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac9g2541 493 Gene3D AP2/ERF domain 156 214 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac9g2541 493 Gene3D AP2/ERF domain 248 307 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac9g2541 493 ProSiteProfiles AP2/ERF domain profile. 249 306 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac9g2541 493 ProSiteProfiles AP2/ERF domain profile. 157 213 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac9g2541 493 MobiDBLite consensus disorder prediction 130 158 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac13g0882 Lac-Chr13:7202381 Lac9g2541 Lac-Chr9:44060890 2.40E-72 dispersed
Lac1g2105 Lac-Chr1:42541476 Lac9g2541 Lac-Chr9:44060890 5.10E-105 dispersed
Lac1g2583 Lac-Chr1:47196586 Lac9g2541 Lac-Chr9:44060890 5.50E-63 dispersed
Lac9g1138 Lac-Chr9:26659016 Lac9g2541 Lac-Chr9:44060890 5.20E-95 dispersed
Lac9g2541 Lac-Chr9:44060890 Lac9g2842 Lac-Chr9:46412527 2.60E-41 dispersed
Lac8g1055 Lac-Chr8:21838413 Lac9g2541 Lac-Chr9:44060890 4.10E-09 transposed
Lac10g3053 Lac-Chr10:45026310 Lac9g2541 Lac-Chr9:44060890 8.60E-98 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
24505 PF00847 AP2 3.10E-09 CL0081 Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac9g2541 K09284 - csv:101222024 877.856