Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lac9g2541 | ATGTTTGATCTTAATCTCAATGTCGACTCGCCTGATGCGACTCAGAATGAGGACTCCGTCGTGTTCTTTGAGAAGCTTCCTCAAGGCTCGGGGAACCAAATGGATGAATCAGGAACTTCCAATTCTTCGATTGTCAATGCGGATACCTCCAGCAATGGCGGCGATGATGACTCGTGCTCCACACGCGCCGGTGGCGAGCTCTTCACATTCAACTTCGAGATATTGAAGGCCGGAAGCGCGAACGACGTTGCCACGAAGGAGTTTTTCCCGATAGGTGGAACGGTGAATGCTGACTTTGGGATTCTTCAGGGGCATAACTCGGCCTCTTCTTCTTCTTCTTCATCGAGGAAGAACTGGATCAACCTTGCGTTTGATCGAAGCGGTTCAGCAGGGGAGGGGAGAATGGTTCAGCAAGTTCAGCCTCAGCCGGTGAAGAAGAGCAGGAGGGGACCGAGGTCTCGGAGTTCGCAGTACAGAGGCGTCACATTCTATCGGAGGACTGGGCGGTGGGAATCTCATATTTGGGACTGCGGAAAGCAGGTCTATCTCGGTGGATTCGACACTGCTCATTCTGCAGCAAGAGCATATGATCGAGCTGCTATCAAGTTTAGAGGGGTCGACGCTGACATTAATTTCAATCTTAGTGATTATGAGGAAGATCTGAAACAGATGAAGAATTTAAGCAAGGAAGAGTTTGTTCACATACTTCGTCGCCAGAGCACTGGTTTCTCAAGGGGGAGCTCAAAATATAGAGGGGTGACTCTGCACAAATGTGGCCGATGGGAAGCTAGAATGGGGCAGCTCCTTGGGAAAAAGTATATATATCTTGGGCTGTTCGACAGCGAGGTAGAAGCTGCAAGGGCTTATGACAAGGCAGCAATCAAATGTAATGGGCGGGAGGCAGTAACCAACTTTGAGCCTAGCACATACGAAGGAGAGAGAATTTCTGAGGGCAGCAGTAAAGGTGGCCGGAACATGCTTGACTTGAATCTAGGAATTTCACCCCCCTCACTTGACAACTGTTCAAAGGATAATGAGGGGCATCTGCGATTCCAATCCGGACGTTATGCTAATGACAGGAGCACAATGATGGAGAGCAATGCTGATGCAGCAGTTGGCGATCCACCTTTGAAAGGACTGGTAATGACATCAGAGCATGCTCCCTTATGGAACGGTTTACAATCTAGCTTCTTTCCCAGTGAGGAAAGCGTGACAGAGAAGAGACTTGCATTAGGTTCGTCCCAAGGAGTCCCCAACTGGGCATGGCAAATTCATGGCCAGGTTAATGCCACCCAAGTGCCACTGTTCTCTGCTGCAGCATCATCAGGATTCTCATTTTCAGCTACCCATTTCCCGGCTGCCATCCATCCATCGCGCCAACCGGGGTCGATCGCCCACAATCTCCATTTCACTTCTGCCAAAGCTTCCCTCACCTCCCCTCAGTACCACCACCAGTTGAACCCACAACAGGCACCACCATAA | 1482 | 50.2 | MFDLNLNVDSPDATQNEDSVVFFEKLPQGSGNQMDESGTSNSSIVNADTSSNGGDDDSCSTRAGGELFTFNFEILKAGSANDVATKEFFPIGGTVNADFGILQGHNSASSSSSSSRKNWINLAFDRSGSAGEGRMVQQVQPQPVKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHSAARAYDRAAIKFRGVDADINFNLSDYEEDLKQMKNLSKEEFVHILRRQSTGFSRGSSKYRGVTLHKCGRWEARMGQLLGKKYIYLGLFDSEVEAARAYDKAAIKCNGREAVTNFEPSTYEGERISEGSSKGGRNMLDLNLGISPPSLDNCSKDNEGHLRFQSGRYANDRSTMMESNADAAVGDPPLKGLVMTSEHAPLWNGLQSSFFPSEESVTEKRLALGSSQGVPNWAWQIHGQVNATQVPLFSAAASSGFSFSATHFPAAIHPSRQPGSIAHNLHFTSAKASLTSPQYHHQLNPQQAPP | 493 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
9 | 44060890 | 44064136 | - | Lag0010028.1 | Lac9g2541 | 621467 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lac9g2541 | 493 | FunFam | AP2-like ethylene-responsive transcription factor | 156 | 215 | - | - | |
Lac9g2541 | 493 | Pfam | AP2 domain | 157 | 205 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lac9g2541 | 493 | Pfam | AP2 domain | 248 | 298 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lac9g2541 | 493 | CDD | AP2 | 157 | 215 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lac9g2541 | 493 | SMART | rav1_2 | 157 | 219 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lac9g2541 | 493 | SMART | rav1_2 | 249 | 312 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lac9g2541 | 493 | MobiDBLite | consensus disorder prediction | 30 | 58 | - | - | |
Lac9g2541 | 493 | PANTHER | AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR | 84 | 342 | - | - | |
Lac9g2541 | 493 | FunFam | AP2-like ethylene-responsive transcription factor | 248 | 308 | - | - | |
Lac9g2541 | 493 | MobiDBLite | consensus disorder prediction | 28 | 58 | - | - | |
Lac9g2541 | 493 | SUPERFAMILY | DNA-binding domain | 156 | 214 | IPR016177 | GO:0003677(InterPro) | |
Lac9g2541 | 493 | SUPERFAMILY | DNA-binding domain | 248 | 307 | IPR016177 | GO:0003677(InterPro) | |
Lac9g2541 | 493 | PRINTS | Ethylene responsive element binding protein signature | 288 | 308 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lac9g2541 | 493 | PRINTS | Ethylene responsive element binding protein signature | 250 | 261 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lac9g2541 | 493 | CDD | AP2 | 248 | 308 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lac9g2541 | 493 | Gene3D | AP2/ERF domain | 156 | 214 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lac9g2541 | 493 | Gene3D | AP2/ERF domain | 248 | 307 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lac9g2541 | 493 | ProSiteProfiles | AP2/ERF domain profile. | 249 | 306 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lac9g2541 | 493 | ProSiteProfiles | AP2/ERF domain profile. | 157 | 213 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lac9g2541 | 493 | MobiDBLite | consensus disorder prediction | 130 | 158 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lac13g0882 | Lac-Chr13:7202381 | Lac9g2541 | Lac-Chr9:44060890 | 2.40E-72 | dispersed | |
Lac1g2105 | Lac-Chr1:42541476 | Lac9g2541 | Lac-Chr9:44060890 | 5.10E-105 | dispersed | |
Lac1g2583 | Lac-Chr1:47196586 | Lac9g2541 | Lac-Chr9:44060890 | 5.50E-63 | dispersed | |
Lac9g1138 | Lac-Chr9:26659016 | Lac9g2541 | Lac-Chr9:44060890 | 5.20E-95 | dispersed | |
Lac9g2541 | Lac-Chr9:44060890 | Lac9g2842 | Lac-Chr9:46412527 | 2.60E-41 | dispersed | |
Lac8g1055 | Lac-Chr8:21838413 | Lac9g2541 | Lac-Chr9:44060890 | 4.10E-09 | transposed | |
Lac10g3053 | Lac-Chr10:45026310 | Lac9g2541 | Lac-Chr9:44060890 | 8.60E-98 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
24505 | PF00847 | AP2 | 3.10E-09 | CL0081 | Lac | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lac9g2541 | K09284 | - | csv:101222024 | 877.856 |