Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac9g2546 ATGGACGACTTCTTAGACAATATACCGCCCATGGATCTGATGCGTTCCGAGAAGATGACTTTTGTCCAGCTTATCATCCCCGTCGAGTCCGCTCATCGAGCCATTTCCTACCTTGGCGAGCTCGGCATCCTTCAATTTAGAGATTTAAACGTGGACAAAAGCCCTTTCCAGAGAACCTTTGTTAACCAGGTAAAGCGATGTGCAGAGATGTCAAGGAAGTTACGATTTTTCAAAGATCAAATCAGTAAAGCTGGTGTACTGGCATCTACACGACCAATTCTTCAAGAACATATTGAGCTAGAGGATTTAGAGGTTCGACTAACTGATCATGAGCATGAGCTGATCGAAATGAACTCTAACAGCGAGAAACTTCGACAGTCATATAATGAACTCTTAGAATTCAAGATGGTATTGCAAAAGGCAAGCGTCTTTCTGGTGTCCAGTAATAGCCATTCAGTTTCAGAAGAAAGGGAGTTGAATGAAAATGTTTTCTTGAATGATAACTATGTTGAGGATGGATCATTACTTGAACAGGAAATGAGACCTGGACCATCGAGCCAATCTGGTTTAAGATTTATTTGTGGAATTATTTGTAAATCCAGAGTTCTTAGATTTGAAAGGATGTTGTTTCGTGCAACAAGAGGAAATATGCTTTTCAATCAGGCGCCAGCAGACATACAGATCATGGATCCCATATCTACGGAAATGGTTGAGAAAACAGTATTTGTAGTGTTTTTCTCTGGGGAGCAGGCCAGAAATAAAGTTTTGAAGATCTGCGAGGCTTTTGGAGCAAATTGCTATCCTGTTCCTGAAGATATAACCAAACAAAGGCAGATAACTAGAGAAGTTACATCTCGCCTCACTGAACTTGAAGCCACTTTAGATGCTGGGATCCGTCACCGAAATGAGGCTCTTGCATCGATAGGGTTTCACCTGATTAAATGGATGAATATGGTAAGAAGGGAAAAGGCTGTATATGATACATTGAACATGTTGAATTTTGATGTCACTAAAAAATGTCTTGTTGGAGAAGGCTGGTGCCCAATCTTTGCAAAAACTCAGATTCAGGAGGCATTGCAACGAGCAACATTTGATAGCAGTTCACAAGTGGGCATAATATTTCATGTGATGGATACGATTGAATCCCCTCCTACATATTTTAGAACAAACCGTTTAACAAGTGCTTTTCAGGAAATTGTTGATGCCTATGGTGTTGCTAGATATCAAGAAGCAAATCCTGCAGTTTACACTGTTATTACATTTCCGTTCCTATTCGCAGTGATGTTTGGGGATTGGGGTCATGGAATATGCTTGCTGCTTGGAGCTTTATTTCTTATAGCTCGTGAAAGTAAGCTCAATAATCAGAAATTAGGAAGCTTTATGGAGATGCTATTTGGTGGACGCTATGTTCTTCTTTTGATGGCCCTATTTTCAATTTATTGTGGGTTGATCTACAATGAGTTCTTCTCTGTTCCGTATCATATATTTGGTGCATCTGCTTACAAGTGTCGAGATAATTCATGCAGTAATGCACACACTGTTGGGTTAGTCAAATACCGCGATCCCTATCCATTTGGTGTTGACCCGAGTTGGCGTGGAAGTCGTTCAGAACTTCCTTTTCTTAACTCTCTTAAAATGAAGATGTCTATCTTGTTGGGTATTGCCCAAATGAACTTAGGGATCATAATAAGTTATTTTAATGCACGTTTTACTGGAAGCTCACTCGATATCAGGTACCAGTTTATACCACAAGTGATCTTTCTTAACAGCCTTTTTGGATATCTTTCTCTTCTCATTGTCATCAAGTGGTGCACTGGGTCTCAAGCAGACCTCTATCATGTGATGATTTACATGTTTCTAAGCCCATTTGATGATCTTGGTGAGAACGAGTTGTTTTGGGGCCAAAGACCTCTTCAAATTATCTTGTTGATGTTGGCTATAGTTGCAGTGCCTTGGATGCTTTTTCCTAAGCCCTTTATTTTGAAAAAGATTCACACAGAGAGATTTCAAGGTCGTACTTATGGGATGCTTGGAACCTCTGAGATAGATCTCGAGGTGGAACCTGATTCGGCACGACAACACCAAGACGACTTCAATTTTAGTGAGATCTTTGTTCACCAAATGATTCACTCCATAGAATTCGTCTTGGGTGCAGTTTCAAATACTGCATCGTATCTCCGACTTTGGGCTTTGAGCTTGGCGCACTCAGAACTGTCAACAGTTTTCTATGAGAAAGTACTCCTCCTAGCTTGGGGGTATGACAGCTTTGTAATCCGGCTGATTGGTTTAGCTGTTTTTTCCTTTGCTACTGCGTTCATACTTCTTATGATGGAGACCCTTAGTGCCTTCCTTCATGCCTTGCGTCTTCACTGGGTAGAGTTTCAAAATAAGTTCTACCATGGTGATGGCTACAAGTTCAAACCTTTTTCCTTTGCCTCCATCAACGAGGATGAAGATTAA 2460 40.69 MDDFLDNIPPMDLMRSEKMTFVQLIIPVESAHRAISYLGELGILQFRDLNVDKSPFQRTFVNQVKRCAEMSRKLRFFKDQISKAGVLASTRPILQEHIELEDLEVRLTDHEHELIEMNSNSEKLRQSYNELLEFKMVLQKASVFLVSSNSHSVSEERELNENVFLNDNYVEDGSLLEQEMRPGPSSQSGLRFICGIICKSRVLRFERMLFRATRGNMLFNQAPADIQIMDPISTEMVEKTVFVVFFSGEQARNKVLKICEAFGANCYPVPEDITKQRQITREVTSRLTELEATLDAGIRHRNEALASIGFHLIKWMNMVRREKAVYDTLNMLNFDVTKKCLVGEGWCPIFAKTQIQEALQRATFDSSSQVGIIFHVMDTIESPPTYFRTNRLTSAFQEIVDAYGVARYQEANPAVYTVITFPFLFAVMFGDWGHGICLLLGALFLIARESKLNNQKLGSFMEMLFGGRYVLLLMALFSIYCGLIYNEFFSVPYHIFGASAYKCRDNSCSNAHTVGLVKYRDPYPFGVDPSWRGSRSELPFLNSLKMKMSILLGIAQMNLGIIISYFNARFTGSSLDIRYQFIPQVIFLNSLFGYLSLLIVIKWCTGSQADLYHVMIYMFLSPFDDLGENELFWGQRPLQIILLMLAIVAVPWMLFPKPFILKKIHTERFQGRTYGMLGTSEIDLEVEPDSARQHQDDFNFSEIFVHQMIHSIEFVLGAVSNTASYLRLWALSLAHSELSTVFYEKVLLLAWGYDSFVIRLIGLAVFSFATAFILLMMETLSAFLHALRLHWVEFQNKFYHGDGYKFKPFSFASINEDED 819
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 44116756 44126949 - Lag0010033.1 Lac9g2546 621472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac9g2546 819 Pfam V-type ATPase 116kDa subunit family 37 811 IPR002490 GO:0033179(InterPro)|GO:0046961(InterPro)|GO:1902600(InterPro)
Lac9g2546 819 PANTHER VACUOLAR PROTON ATPASES 11 818 IPR002490 GO:0007035(PANTHER)|GO:0016471(PANTHER)|GO:0033179(InterPro)|GO:0046961(InterPro)|GO:0051117(PANTHER)|GO:1902600(InterPro)
Lac9g2546 819 PIRSF ATP6V0A1 9 819 IPR026028 GO:0000220(InterPro)|GO:0046961(InterPro)
Lac9g2546 819 Coils Coil 93 127 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac6g0465 Lac-Chr6:3813020 Lac9g2546 Lac-Chr9:44116756 1.50E-217 dispersed
Lac6g0466 Lac-Chr6:3819683 Lac9g2546 Lac-Chr9:44116756 2.20E-70 dispersed
Lac9g2546 Lac-Chr9:44116756 Lac4g1440 Lac-Chr4:32843009 4.00E-265 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac9g2546 K02154 - csv:101216514 1605.5