Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac9g2556 ATGGAAGGCAGTGACACAATCACCACCGTTTCATCAACTCCACTATCTCAATCTCCTTCTTCTTCTTCTTCTCCTCCCGCTCCGCCGCCGCCCGTCGTTCTCAGTCCTTGTGCGGCCTGCAAGATATTGAGGCGGCGATGCGCCGAACGATGTGTATTGGCGCCCTATTTCCCGCCCACTGAGCCGGCGAAGTTCGCCATCGCTCATCGAGTTTTTGGCGCTAGCAATATCATCAAATTCTTGCAGGAACTGCCTGAATCCCAAAGGGCCGATGCAGTGAGCAGCTTGGTTTATGAAGCGAGTGCGAGGATCAGAGACCCTGTTTATGGGTCAGCAGGGGCCATTTGCCAACTCCAAAAGCAAGTCAATGAGCTTCAAGCGCAGCTAGCCAAGGCCCAGGCCGAGCTCGTCAACATGCAATGCCAACAAGCCAATCTGGTGGCTTTTGTTTGCAGGGAATTGGCTCAGTCTCATCAGTCTTTCGATGATTTCAATGCCAGCCCTCAAAGTGGCTTCCAAAGCATCAGCCCAAGCTACTTTGATGATAGCAATGTAAACCCATTGTGGGAGCCTCTCTGGACATGA 585 52.48 MEGSDTITTVSSTPLSQSPSSSSSPPAPPPPVVLSPCAACKILRRRCAERCVLAPYFPPTEPAKFAIAHRVFGASNIIKFLQELPESQRADAVSSLVYEASARIRDPVYGSAGAICQLQKQVNELQAQLAKAQAELVNMQCQQANLVAFVCRELAQSHQSFDDFNASPQSGFQSISPSYFDDSNVNPLWEPLWT 194
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 44206803 44208258 + Lag0010043.1 Lac9g2556 621482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac9g2556 194 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 35 159 - -
Lac9g2556 194 MobiDBLite consensus disorder prediction 1 31 - -
Lac9g2556 194 Coils Coil 115 142 - -
Lac9g2556 194 MobiDBLite consensus disorder prediction 1 20 - -
Lac9g2556 194 Pfam Lateral organ boundaries (LOB) domain 36 133 IPR004883 -
Lac9g2556 194 ProSiteProfiles LOB domain profile. 35 136 IPR004883 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac7g2532 Lac-Chr7:43406229 Lac9g2556 Lac-Chr9:44206803 1.70E-55 dispersed
Lac9g2362 Lac-Chr9:42835271 Lac9g2556 Lac-Chr9:44206803 6.00E-32 dispersed
Lac13g0890 Lac-Chr13:7301210 Lac9g2556 Lac-Chr9:44206803 9.70E-51 transposed
Lac7g2531 Lac-Chr7:43325113 Lac9g2556 Lac-Chr9:44206803 1.00E-48 wgd
Lac8g2439 Lac-Chr8:42445857 Lac9g2556 Lac-Chr9:44206803 1.90E-23 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
24507 PF03195 LOB 3.70E-41 No_clan Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac9g2556 - - - 0.0