Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac9g2568 ATGGAGATGCGCACTTTTGACCTCCAGCCGCAGATCCTCTGCAGGGTCATCAATGTCCACCTACTTGCCAATAAGGAGAATGATGAGGTCTACACACAACTTACTCTGCTTCCCTTGCCAGAGTTATTAGGCAGTGCTCTTGAGGGCAAAGAGCTGGAGGAATTGGCGTCGAATGGAGCTGATGGGGATGGGAGCGGAGGGTCGCCTACTAGATCTACACCTCACATGTTCTGCAAAACACTCACAGCCTCTGACACCAGCACCCATGGAGGATTCTCTGTTCCCCGCAGGGCTGCTGAAGACTGTTTCCCTCCTCTGGATTACACTCAGCTTAGGCCATCTCAAGAGCTAATAGCCAAGGACCTGCATGGCGTAGAGTGGAGATTTAAACATATTTACAGAGTGCTATTTTTAAGGGGTGAAAATGGAGAGCTAAGGTTGGGAATCAGGCGAGCTGTTCGGCCTAGAAATGGTCTTCCTGATTCAATTGTTGGCAACCAAAATTCTTGTGCAAACGATCTTGCTCATGTGGTGAAAGCAATATCCACCAAGAGCATGTTTGATGTGTTTTACAATCCAAGGGCATATCATGCACAGTTTGTTGTATCTTGCCAGAAGTATGTGAAGAGCATCAATAATCCAGTAACTGTAGGCACAAGATTCAAAATGAGATTCGAGATGGATGATTCGCCAGAAAGAAGGTTTAATGGTGTAGTCATCGGAATTGGTGACATGGATCCCTTTAGATGGCCGAACTCAAAGTGGAGATGCTTGACGGTCCGATGGGATAAAGACAGCGATCATCAAGAACGTGTTTCCCCCTGGGAGATTGATCCTTCTGTTTCTCTCCCACCCTTGAGTATCCAGTCTTCTCCAAGGCTGAAGAAACTGAGGACTAGTCTGCAGGCAGCCCCACCTAATAACGCCTTTACTGGGAGGGGCGGTTTTATGGACTTTGAGGATTCAATTAGATCCTCTAAGGTCTTGCAAGGTCAAGAAAATGTAGGTATTGTATCACCCTTTTATGGATGTGATACTGCAAAACGTTCACTGGAGTTTGAGGTGCGATCTTCTGCACAACAAAATCAAGCGTCGGGTGGAGTTGAAAAGATTAATATAGGTGATTATGTAAAGGTTCATCCGAACTCTTCTTTCACAGGCTTTATGGAATCTGATAGATTTCTGAAGGTCTTGCAAGGTCAAGAAATATGCTCATTGAGGCCACCAACAAGAAAACCAGAATATGGTTTAGGTGTTTGGGGAAAGTTCAATCTTAGTGACAACTCTTTTAACACATTTCAATCACCAAACTCCAGTTTTTATCACATGGCGTCAAATGGTGCCCAAAATATGTATTTCCCTCGTGGTGAAATATACAGTATGGGCCAAGCCGCTATGATTCGCTCAAATGATAGCAACTTTCCAAGAGAAAATACCTTGTTCAACCCATCTGCTGTTGATGCGAGTGTTATCAGGACCAAAATGGAAAGGGCTAATCGTTCACTTGATCGGGAGTCTCTACATCTAGTTTCTGCTACCCCAACTTCAGGGTTGAATATGAGGAATTCAAAGGATGAAAATGTGAATGAGAATCCAACTGGCTGTAAACTTTTTGGCTTTTCCTTGACTACGGAAACTGCTTCAAACTTGCAAAGTTCAGGGAAGAGAAGTTGCACCAAGGTTCACAAACAAGGCAGCCTGGTAGGAAGAGCTATCGATCTCTCAAGACTGAATGGCTATACTGATCTGCTTTCTGAACTGGAGCGGCTGTTTAGCATGGAAGGACTCTTAAAAGATCCTGATAAAGGATGGCGAGTACTGTACACCGACAATGAGAACGACGTAATGGTTGTTGGGGATTATCCATGGCATGACTTCTGTGATGCCGTTTCGAAAATCCATATATACACCCAAGAAGAAGTGGAGAAGATGAGCAATGGAGTGATCAGTGATGATACTCAAAGCTGCTTAGACCAGGCACCTTTATGTATGGAAGCATCAAAATCCTCTTCAGTGGGCCAACCTGATTCTTCTCCAACAGTAGTAAGAGAGTTTAATTAG 2061 44.35 MEMRTFDLQPQILCRVINVHLLANKENDEVYTQLTLLPLPELLGSALEGKELEELASNGADGDGSGGSPTRSTPHMFCKTLTASDTSTHGGFSVPRRAAEDCFPPLDYTQLRPSQELIAKDLHGVEWRFKHIYRVLFLRGENGELRLGIRRAVRPRNGLPDSIVGNQNSCANDLAHVVKAISTKSMFDVFYNPRAYHAQFVVSCQKYVKSINNPVTVGTRFKMRFEMDDSPERRFNGVVIGIGDMDPFRWPNSKWRCLTVRWDKDSDHQERVSPWEIDPSVSLPPLSIQSSPRLKKLRTSLQAAPPNNAFTGRGGFMDFEDSIRSSKVLQGQENVGIVSPFYGCDTAKRSLEFEVRSSAQQNQASGGVEKINIGDYVKVHPNSSFTGFMESDRFLKVLQGQEICSLRPPTRKPEYGLGVWGKFNLSDNSFNTFQSPNSSFYHMASNGAQNMYFPRGEIYSMGQAAMIRSNDSNFPRENTLFNPSAVDASVIRTKMERANRSLDRESLHLVSATPTSGLNMRNSKDENVNENPTGCKLFGFSLTTETASNLQSSGKRSCTKVHKQGSLVGRAIDLSRLNGYTDLLSELERLFSMEGLLKDPDKGWRVLYTDNENDVMVVGDYPWHDFCDAVSKIHIYTQEEVEKMSNGVISDDTQSCLDQAPLCMEASKSSSVGQPDSSPTVVREFN 686
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 44277163 44282891 - Lag0010055.1 Lac9g2568 621494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac9g2568 686 MobiDBLite consensus disorder prediction 667 686 - -
Lac9g2568 686 SUPERFAMILY DNA-binding pseudobarrel domain 71 147 IPR015300 -
Lac9g2568 686 FunFam Auxin response factor 214 284 - -
Lac9g2568 686 Gene3D - 75 135 IPR015300 -
Lac9g2568 686 Gene3D - 215 284 - -
Lac9g2568 686 SMART B3_2 77 153 IPR003340 GO:0003677(InterPro)
Lac9g2568 686 SUPERFAMILY CAD & PB1 domains 558 635 - -
Lac9g2568 686 Gene3D - 552 645 - -
Lac9g2568 686 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 7 646 IPR044835 GO:0003677(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Lac9g2568 686 Pfam Auxin response factor 178 258 IPR010525 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Lac9g2568 686 Pfam AUX/IAA family 603 641 IPR033389 -
Lac9g2568 686 FunFam Auxin response factor 551 645 - -
Lac9g2568 686 Pfam B3 DNA binding domain 77 134 IPR003340 GO:0003677(InterPro)
Lac9g2568 686 CDD B3_DNA 75 134 IPR003340 GO:0003677(InterPro)
Lac9g2568 686 ProSiteProfiles PB1 domain profile. 556 640 IPR053793 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac8g2412 Lac-Chr8:42232772 Lac9g2568 Lac-Chr9:44277163 3.80E-35 dispersed
Lac9g2568 Lac-Chr9:44277163 Lac9g2590 Lac-Chr9:44434178 4.70E-41 dispersed
Lac9g2568 Lac-Chr9:44277163 Lac5g2249 Lac-Chr5:41182364 1.30E-91 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac9g2568 K14486 - csv:101212503 1264.21