Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lac9g2572 | ATGACCGTAATCGACATCATCTTCCGAGTCGATTCTATCTGCAAAAAATACGACAAGTATGATGTCGAGAAACAGCGTGAGCTCAATGCTTATGGCGACGATGTCTTTGCTCGCCTCTTCGCCGCCGTTGAGGCCGAAATCGACGCCGCTCTCCAGAAATCGGAGGCTGCCTCGACCGAGAAGAATAGGGCTGCTGCAGTTGCCATGAACGCCGAGGTTCGGCGGAAGAAGGCCCGATTGATGGATGAAGTGCCTAAGCTTCGTAAATTGGCTCACAAGAAGGTTAAAGGGGTTCCGAAAGAAGAGCTTGCGGTCAGAGATGATCTTGTTCTTGGGCTCGAGGAGAGGATCAAAGCGATTCCAGATGGGGGTACCTCCGCAGGCAAACAATCTGGAGGATGGGCCTCCTCCTCCTCATCGAACAACATCAAATTTGACTCAACATCAGATGGAAACTTTGAGAGCGAGTATTTCCAGCAGAGTGAAGAATCAAGTCAATTTCGACAGGAGTATGAAATGCGGAAGATGAAACAGGACCAAGGGCTCGATATCATATCTGAAGGGTTGGATATGCTGAAAAATCTGGCCCATGATATGAATGAGGAATTGGACAGGCAAGTTCCATTAATTGACGAGATCGACGCAAAGGTTGACAAGGTGACTAATGAGATTAAAAATACCAATGTTAGGCTCAAGGAAACACTCTATGAGGTGAGATCCAGTCAAAACTTCTGCATTGATATCATTCTTCTCTGTGTAATTCTTGGAATCGCTTCTTACTTATACAAGTAA | 792 | 46.34 | MTVIDIIFRVDSICKKYDKYDVEKQRELNAYGDDVFARLFAAVEAEIDAALQKSEAASTEKNRAAAVAMNAEVRRKKARLMDEVPKLRKLAHKKVKGVPKEELAVRDDLVLGLEERIKAIPDGGTSAGKQSGGWASSSSSNNIKFDSTSDGNFESEYFQQSEESSQFRQEYEMRKMKQDQGLDIISEGLDMLKNLAHDMNEELDRQVPLIDEIDAKVDKVTNEIKNTNVRLKETLYEVRSSQNFCIDIILLCVILGIASYLYK | 263 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
9 | 44322461 | 44324074 | + | Lag0010059.1 | Lac9g2572 | 621498 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lac9g2572 | 263 | Gene3D | - | 172 | 233 | - | - | |
Lac9g2572 | 263 | MobiDBLite | consensus disorder prediction | 129 | 146 | - | - | |
Lac9g2572 | 263 | ProSitePatterns | Syntaxin / epimorphin family signature. | 178 | 217 | IPR006012 | GO:0005484(InterPro)|GO:0006886(InterPro)|GO:0016020(InterPro) | |
Lac9g2572 | 263 | SMART | tSNARE_6 | 167 | 234 | IPR000727 | - | |
Lac9g2572 | 263 | Pfam | SNARE domain | 209 | 258 | IPR000727 | - | |
Lac9g2572 | 263 | SUPERFAMILY | SNARE fusion complex | 167 | 232 | - | - | |
Lac9g2572 | 263 | Coils | Coil | 210 | 230 | - | - | |
Lac9g2572 | 263 | ProSiteProfiles | t-SNARE coiled-coil homology domain profile. | 172 | 234 | IPR000727 | - | |
Lac9g2572 | 263 | MobiDBLite | consensus disorder prediction | 121 | 146 | - | - | |
Lac9g2572 | 263 | PANTHER | SYNTAXIN | 7 | 252 | IPR045242 | GO:0000149(PANTHER)|GO:0005484(PANTHER)|GO:0006886(PANTHER)|GO:0006906(PANTHER)|GO:0012505(PANTHER)|GO:0016021(PANTHER)|GO:0031201(PANTHER)|GO:0048278(PANTHER) | |
Lac9g2572 | 263 | FunFam | Putative syntaxin-71-like | 172 | 233 | - | - | |
Lac9g2572 | 263 | CDD | SNARE_Qc | 177 | 233 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lac1g1934 | Lac-Chr1:40992214 | Lac9g2572 | Lac-Chr9:44322461 | 2.70E-19 | dispersed | |
Lac10g3026 | Lac-Chr10:44824372 | Lac9g2572 | Lac-Chr9:44322461 | 1.40E-100 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lac9g2572 | K08506 | - | csv:101211289 | 435.261 |