Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac9g2572 ATGACCGTAATCGACATCATCTTCCGAGTCGATTCTATCTGCAAAAAATACGACAAGTATGATGTCGAGAAACAGCGTGAGCTCAATGCTTATGGCGACGATGTCTTTGCTCGCCTCTTCGCCGCCGTTGAGGCCGAAATCGACGCCGCTCTCCAGAAATCGGAGGCTGCCTCGACCGAGAAGAATAGGGCTGCTGCAGTTGCCATGAACGCCGAGGTTCGGCGGAAGAAGGCCCGATTGATGGATGAAGTGCCTAAGCTTCGTAAATTGGCTCACAAGAAGGTTAAAGGGGTTCCGAAAGAAGAGCTTGCGGTCAGAGATGATCTTGTTCTTGGGCTCGAGGAGAGGATCAAAGCGATTCCAGATGGGGGTACCTCCGCAGGCAAACAATCTGGAGGATGGGCCTCCTCCTCCTCATCGAACAACATCAAATTTGACTCAACATCAGATGGAAACTTTGAGAGCGAGTATTTCCAGCAGAGTGAAGAATCAAGTCAATTTCGACAGGAGTATGAAATGCGGAAGATGAAACAGGACCAAGGGCTCGATATCATATCTGAAGGGTTGGATATGCTGAAAAATCTGGCCCATGATATGAATGAGGAATTGGACAGGCAAGTTCCATTAATTGACGAGATCGACGCAAAGGTTGACAAGGTGACTAATGAGATTAAAAATACCAATGTTAGGCTCAAGGAAACACTCTATGAGGTGAGATCCAGTCAAAACTTCTGCATTGATATCATTCTTCTCTGTGTAATTCTTGGAATCGCTTCTTACTTATACAAGTAA 792 46.34 MTVIDIIFRVDSICKKYDKYDVEKQRELNAYGDDVFARLFAAVEAEIDAALQKSEAASTEKNRAAAVAMNAEVRRKKARLMDEVPKLRKLAHKKVKGVPKEELAVRDDLVLGLEERIKAIPDGGTSAGKQSGGWASSSSSNNIKFDSTSDGNFESEYFQQSEESSQFRQEYEMRKMKQDQGLDIISEGLDMLKNLAHDMNEELDRQVPLIDEIDAKVDKVTNEIKNTNVRLKETLYEVRSSQNFCIDIILLCVILGIASYLYK 263
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 44322461 44324074 + Lag0010059.1 Lac9g2572 621498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac9g2572 263 Gene3D - 172 233 - -
Lac9g2572 263 MobiDBLite consensus disorder prediction 129 146 - -
Lac9g2572 263 ProSitePatterns Syntaxin / epimorphin family signature. 178 217 IPR006012 GO:0005484(InterPro)|GO:0006886(InterPro)|GO:0016020(InterPro)
Lac9g2572 263 SMART tSNARE_6 167 234 IPR000727 -
Lac9g2572 263 Pfam SNARE domain 209 258 IPR000727 -
Lac9g2572 263 SUPERFAMILY SNARE fusion complex 167 232 - -
Lac9g2572 263 Coils Coil 210 230 - -
Lac9g2572 263 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 172 234 IPR000727 -
Lac9g2572 263 MobiDBLite consensus disorder prediction 121 146 - -
Lac9g2572 263 PANTHER SYNTAXIN 7 252 IPR045242 GO:0000149(PANTHER)|GO:0005484(PANTHER)|GO:0006886(PANTHER)|GO:0006906(PANTHER)|GO:0012505(PANTHER)|GO:0016021(PANTHER)|GO:0031201(PANTHER)|GO:0048278(PANTHER)
Lac9g2572 263 FunFam Putative syntaxin-71-like 172 233 - -
Lac9g2572 263 CDD SNARE_Qc 177 233 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac1g1934 Lac-Chr1:40992214 Lac9g2572 Lac-Chr9:44322461 2.70E-19 dispersed
Lac10g3026 Lac-Chr10:44824372 Lac9g2572 Lac-Chr9:44322461 1.40E-100 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac9g2572 K08506 - csv:101211289 435.261