Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac9g2580 ATGGGCAAGGACGTCGAGGTTGCCGAAGGCGAATTCCAAGCCAAGGACTACCAAGACCCTCCCCCCGCCCCGCTCATCGACCCCGAAGAGCTCACCAAATGGTCCCTCTACCGTGCCGCCATCGCCGAATTCATCGCCACTCTCCTCTTCCTCTACGTCACTGTTTTGACCGTCATCGGCTACTCCCACCAGAGTGACCCAACCATATCCACCGACCCGTGTAGCGGTGTTGGCATCCTCGGCATCGCCTGGGCCTTCGGCGGCATGATCTTCATCCTCGTCTACTGCACCGCCGGTATCTCCGGTGGACACATCAACCCGGCCGTGACGTTCGGATTGTTTTTGGCGAGGAAGGTGTCATTGGTTAGGGCGTTGTTGTACATAATTGCGCAGTGTGCTGGTGCCATCTGTGGGTGTGGATTGGTTAAGGCTTTCCAGTCGGCGTTCTATGTGAGGTATAAGGGTGGGGCCAACATGCTCGCTGATGGATACAACAAAGGCACTGGATTGGGAGCTGAAATCATCGGTACCTTTGTTCTTGTCTACACAGTCTTCTCTGCCACTGATCCCAAGAGAAGCGCCAGAGATTCCCATGTTCCTGTTTTGGCACCACTGCCCATTGGATTTGCAGTGTTCATGGTTCACTTGGCTACAATTCCCATCACTGGAACTGGAATTAACCCTGCAAGAAGTTTCGGAGCTGCTGTAATTTACAACCACGAAAAGGCCTGGGATGACCAATGGATTTTCTGGGTTGGGCCATTTATTGGAGCTGCAATTGCTGCAATTTACCACCAGTATGTGCTCAGAGCTGGAGCCATTAAGGCTCTTGGATCCTTCAGGAGCAACGCTTGA 855 53.33 MGKDVEVAEGEFQAKDYQDPPPAPLIDPEELTKWSLYRAAIAEFIATLLFLYVTVLTVIGYSHQSDPTISTDPCSGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLARKVSLVRALLYIIAQCAGAICGCGLVKAFQSAFYVRYKGGANMLADGYNKGTGLGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNHEKAWDDQWIFWVGPFIGAAIAAIYHQYVLRAGAIKALGSFRSNA 284
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 44358020 44359162 - Lag0010067.1 Lac9g2580 621506
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac9g2580 284 CDD MIP 38 268 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lac9g2580 284 Pfam Major intrinsic protein 30 265 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lac9g2580 284 NCBIfam MIP family channel protein 42 264 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lac9g2580 284 SUPERFAMILY Aquaporin-like 29 270 IPR023271 -
Lac9g2580 284 FunFam Probable aquaporin PIP1-2 23 284 - -
Lac9g2580 284 Gene3D Glycerol uptake facilitator protein. 23 284 IPR023271 -
Lac9g2580 284 PRINTS Major intrinsic protein family signature 248 268 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lac9g2580 284 PRINTS Major intrinsic protein family signature 123 142 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lac9g2580 284 PRINTS Major intrinsic protein family signature 38 57 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lac9g2580 284 PRINTS Major intrinsic protein family signature 172 190 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lac9g2580 284 PRINTS Major intrinsic protein family signature 86 110 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lac9g2580 284 PRINTS Major intrinsic protein family signature 208 230 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lac9g2580 284 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 1 282 IPR034294 GO:0005886(PANTHER)|GO:0015250(PANTHER)
Lac9g2580 284 ProSitePatterns MIP family signature. 104 112 IPR022357 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac11g2078 Lac-Chr11:36652190 Lac9g2580 Lac-Chr9:44358020 2.30E-111 dispersed
Lac13g1097 Lac-Chr13:9352405 Lac9g2580 Lac-Chr9:44358020 2.10E-115 dispersed
Lac1g2125 Lac-Chr1:42706284 Lac9g2580 Lac-Chr9:44358020 3.50E-128 dispersed
Lac1g2126 Lac-Chr1:42710492 Lac9g2580 Lac-Chr9:44358020 4.00E-132 dispersed
Lac1g2127 Lac-Chr1:42714033 Lac9g2580 Lac-Chr9:44358020 2.20E-122 dispersed
Lac4g2901 Lac-Chr4:47447596 Lac9g2580 Lac-Chr9:44358020 1.20E-31 dispersed
Lac8g2480 Lac-Chr8:42714981 Lac9g2580 Lac-Chr9:44358020 7.70E-26 dispersed
Lac9g1835 Lac-Chr9:38123000 Lac9g2580 Lac-Chr9:44358020 6.60E-111 dispersed
Lac1g1720 Lac-Chr1:38677439 Lac9g2580 Lac-Chr9:44358020 2.00E-10 transposed
Lac6g2382 Lac-Chr6:41508708 Lac9g2580 Lac-Chr9:44358020 8.00E-25 transposed
Lac1g2122 Lac-Chr1:42679618 Lac9g2580 Lac-Chr9:44358020 4.50E-115 wgd
Lac10g3020 Lac-Chr10:44771310 Lac9g2580 Lac-Chr9:44358020 2.90E-117 wgd
Lac8g2417 Lac-Chr8:42264865 Lac9g2580 Lac-Chr9:44358020 8.60E-127 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac9g2580 K09872 - csv:101215300 533.102