Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac9g2585 ATGGCCATGGCTATCGCTCATCACAGGGAGAGTAGTAGTGGGAGCATAACCAGGCATCTTGATAGTACTGGAAAGTATGTTCGATACACAGCAGAGCAGGTCGAGGCTCTTGAGCGAGTCTATGCCGAGTGCCCGAAGCCAAGTTCTCTTCGGAGGCAGCAGCTCATCCGGGAATGCCCAATTCTTTCCAATATAGAACCCAAGCAGATCAAAGTTTGGTTCCAAAATCGCAGATGTAGGGAGAAGCAAAGGAAGGAGGCTTCTCGGCTGCAGACAGTGAACAGAAAATTGAATGCTATGAATAAATTGTTGATGGAGGAGAATGATCGGCTGCAGAAACAAGTGTCGCAATTGGTGTGTGAGAATGGATTTATGCGGCAGCAATTGCAAACAGTGCCAGCAGCAACTACTGATGCTAGCTGTGATTCTGTGGTCACCACTCCTCAACCTTCTCGAAGAGATGCTAATAACCCAGCTGGACTCCTCTCAATTGCAGAGGAGACCTTGGCAGAGTTCCTTTCAAAGGCTACAGGAACTGCTGTTGATTGGGTCCAGATGCCTGGGATGAAGCCTGGTCCGGATTCTGTTGGGATCTTTGCCATTTCACAAAGTTGCGGCGGAGTGGCAGCAAGAGCCTGTGGTCTTGTAAGTTTGGAGCCTTCAAAGATTGCAGAGATCCTTAAAGATCGTCCATCGTGGTTTCGTGATTGTCGAAACCTTGAGGTTTTTACCATGTTTCCAGCTGGAAATGGTGGGACAATTGAACTTGTTTACACACAGGTATATGCTCCAACTACCCTTGCTCCTGCACGTGATTTTTGGACTCTAAGATACACGATAACTTTGGAAAACGGCAGCCTTGTGGTTTGTGAGAGATCTCTCTCTGGATCTGGTGCTGGTCCAAGTGCAGCTGCTGCTGCTCAGTTTGTGAGAGCTGAGATGCTCCCAAGTGGTTACCTGATTCGACCATGTGAGGGTGGTGGGTCCATCATACATATAGTAGATCACCTAAATCTTGAGGCGTGGAATGTTCCTGAGGTGCTGCGACCACTTTATGAATCATCAAAAGTAGTGGCTCAGAAGATGACTATAGCAGCACTACGGTACGTTAGGCAAATAGCTCAAGAGACGAGTGGTGAAGTGGTTTATGGTTTGGGCCGGCAACCTGCTGTTCTGCGAACCTTTAGCCAAAGATTGAGCAGGGGTTTTAATGATGCAGTGAATGGATTTAATGACAATGGATGGTCATTAATTAATTGTGAAGGTGCTGAGGATGTGGTACTCGCTGTGAATTCTACGAAAAATTTGGGCACAACATCCAACCCTGCTAACTCCTTAACGTATCCTGGGGGAGTTCTTTGTGCAAAGGCTTCCATGCTACTCCAAAATGTTCCTCCTGCCGTGTTAGTTCGTTTCTTGAGAGAACACCGCTCAGAGTGGGCTGATTTCAACATCGATGCATACTCTGCAGCAACCCTTAAAGCCAACTCATACGCATATCCAGGGATGAGACCCACAAGGTTTACCGGTAGTCAAATCATCATGCCACTTGGCCACACAATCGAGCATGAAGAGTTGCTTGAAGTAATTCGACTTGAAGGACATCCAATGGTACAAGAAGATGCTTTTGTTTCAAGGGACATTCATCTTCTTCAGATATGTAGTGGAATTGACGAGAATGCTGTAGGAGCCTGTTCAGAACTCATTTTTGCCCCAATTGATGAGATGTTTCCAGACGATGCCCCACTCCTGCCTTCTGGCTTTCGAATTATCCCATTGGATTCCAGAACAAGTGATGCTAAAGGGACATTGACTACACAACGGACTCTGGATCTAACATCAAGTCTTGAAGTGGGCTCTGGAACAAGCAATAGTGCTGGAGATGCATCGTCAAGTCAGAGCTCTAGATCAGTGTTGACTATCGCATTCCAGTTTCCTTTCGAAAGCAGCATGCAGGATAATGTAGCAAACATGGCACACCAGTATGTACGTAGCGTCATTTCCTCGGTGCAGAGAGTTGCAATGGCCATATCTCCATCTGGCGGCAGTCCAGCATTAGGTCCAAAGCTGTCTCCTGGTTCTCCAGAAGCTCTTACTCTAGCACATTGGATATGCAAGAGCTATAGTTACCAATTGGGAACGGAGTTGATCAGGTCAGATTCCATGGAAAGTGATTCCCTGTTGAAAAATCTCTGGAATCATCAGGATGCAATATTGTGCTGTTCGCTGAAGTCACTGCCTGTTTTCATGTTTGCAAACCAAGCTGGGCTTGACATGTTAGAGACGACTCTAGTAGCCTTACAAGACATCACATTGGATAAGATTTTCGACGAGGCGGGTCGCAAAGCTTTGTGTTCCGATTTCCCAAAGTTAATGCAGCAGGGATTTGCATACTTACCTGGAGGAATCTGTGCGTCGACAATGGGGCGACACGTTTCATACGAACAAGCCATTGCATGGAAAGTCCTCGAGGCAGACGAGACGACAGTCCATTGCCTTGCCTTCTCTTTCATGAACTGGTCTTTTGTTTGA 2532 46.72 MAMAIAHHRESSSGSITRHLDSTGKYVRYTAEQVEALERVYAECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKEASRLQTVNRKLNAMNKLLMEENDRLQKQVSQLVCENGFMRQQLQTVPAATTDASCDSVVTTPQPSRRDANNPAGLLSIAEETLAEFLSKATGTAVDWVQMPGMKPGPDSVGIFAISQSCGGVAARACGLVSLEPSKIAEILKDRPSWFRDCRNLEVFTMFPAGNGGTIELVYTQVYAPTTLAPARDFWTLRYTITLENGSLVVCERSLSGSGAGPSAAAAAQFVRAEMLPSGYLIRPCEGGGSIIHIVDHLNLEAWNVPEVLRPLYESSKVVAQKMTIAALRYVRQIAQETSGEVVYGLGRQPAVLRTFSQRLSRGFNDAVNGFNDNGWSLINCEGAEDVVLAVNSTKNLGTTSNPANSLTYPGGVLCAKASMLLQNVPPAVLVRFLREHRSEWADFNIDAYSAATLKANSYAYPGMRPTRFTGSQIIMPLGHTIEHEELLEVIRLEGHPMVQEDAFVSRDIHLLQICSGIDENAVGACSELIFAPIDEMFPDDAPLLPSGFRIIPLDSRTSDAKGTLTTQRTLDLTSSLEVGSGTSNSAGDASSSQSSRSVLTIAFQFPFESSMQDNVANMAHQYVRSVISSVQRVAMAISPSGGSPALGPKLSPGSPEALTLAHWICKSYSYQLGTELIRSDSMESDSLLKNLWNHQDAILCCSLKSLPVFMFANQAGLDMLETTLVALQDITLDKIFDEAGRKALCSDFPKLMQQGFAYLPGGICASTMGRHVSYEQAIAWKVLEADETTVHCLAFSFMNWSFV 843
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 44396202 44402007 + Lag0010072.1 Lac9g2585 621511
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac9g2585 843 Coils Coil 80 121 - -
Lac9g2585 843 ProSiteProfiles 'Homeobox' domain profile. 20 84 IPR001356 GO:0003677(InterPro)
Lac9g2585 843 CDD homeodomain 25 85 IPR001356 GO:0003677(InterPro)
Lac9g2585 843 SMART HOX_1 22 88 IPR001356 GO:0003677(InterPro)
Lac9g2585 843 Gene3D - 200 378 IPR023393 -
Lac9g2585 843 SUPERFAMILY Homeodomain-like 23 87 IPR009057 -
Lac9g2585 843 Pfam START domain 164 372 IPR002913 GO:0008289(InterPro)
Lac9g2585 843 CDD bZIP 77 116 - -
Lac9g2585 843 ProSiteProfiles START domain profile. 154 382 IPR002913 GO:0008289(InterPro)
Lac9g2585 843 SUPERFAMILY Bet v1-like 163 375 - -
Lac9g2585 843 FunFam Homeobox-leucine zipper protein REVOLUTA 25 80 - -
Lac9g2585 843 Pfam Homeodomain 25 83 IPR001356 GO:0003677(InterPro)
Lac9g2585 843 Pfam MEKHLA domain 699 842 IPR013978 -
Lac9g2585 843 Gene3D - 19 91 - -
Lac9g2585 843 CDD START_ArGLABRA2_like 158 374 - -
Lac9g2585 843 SMART START_1 163 373 IPR002913 GO:0008289(InterPro)
Lac9g2585 843 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 19 843 IPR044830 GO:0003700(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac10g1163 Lac-Chr10:9794037 Lac9g2585 Lac-Chr9:44396202 0.00E+00 dispersed
Lac1g3581 Lac-Chr1:55036298 Lac9g2585 Lac-Chr9:44396202 0.00E+00 dispersed
Lac2g0841 Lac-Chr2:6647645 Lac9g2585 Lac-Chr9:44396202 5.80E-302 dispersed
Lac4g2918 Lac-Chr4:47541330 Lac9g2585 Lac-Chr9:44396202 0.00E+00 dispersed
Lac6g1804 Lac-Chr6:29563280 Lac9g2585 Lac-Chr9:44396202 1.40E-11 dispersed
Lac9g2585 Lac-Chr9:44396202 Lac5g0223 Lac-Chr5:2007748 1.90E-07 dispersed
Lac9g2585 Lac-Chr9:44396202 Lac7g2289 Lac-Chr7:38486348 0.00E+00 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
24509 PF01852 START 8.60E-46 CL0209 Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac9g2585 K09338 - csv:101215773 1585.08