Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac9g2590 ATGGAGTTATTGAGAGAAGAGCGCGTGGAGAAAGCAGGTGAGGTGAGAAACACGCGCGAAAGAACAGAAGGAAGAATAAAATCGGAAAAAAAGCAGAGTCCGAACAGGGCGAGATTGTTTGTTTGGTTGTTTTGTTTGTTTCCTTCAACCAAGAGGCCTCGCTATTTGGGATCTAAACGCATACCAACAACCCCTAATTCCACAGATCTTCACCGGATCATCATCTTTCAATCTTTGCCTTTCACTCGCCCTCTCCTCTCCTTGCCGATTCGAATACCCACCCACCCTTTTCCTTTTTCACAAACCAACACTACTACCGCCTTCGATCTGACGGCAGCGAATCTGTTTGTTTTCTTCTTTTCAATCAAGGAAGCTGTATTATTGGCGATAAACGAAACTGGGTTTTCCTGGCCCATTTCAACCGAGAAAGGCATTACATTTGGGGAAAACGCAATCATTCGAATGAAAGAAGCAGAGAAAAACTTAGATCCTCAACTATGGCATGCCTGTGCTGGAGGCATGGTCCAGATGCCTGCAATTAACTCCAAGGTCTTTTACTTCCCTCAGGGCCACGCCGAGCACGCTCAGGCCACCGTCGATTTCACCTCTTCACTCAGAATCCCGCCCCTTATTCCTTGTCGCGTGCTCGCCGTCAAGTTCTTGGCGGACCATGAAACCGATGAAGTTTATGCCAATATAAGATTGGTTCCTCTGGCGAACAACGAACTCAATTTTGAGGAAGAGGGTGGTTTTGGGAGTAATGGGTCTGAGAATAACATGGAGAAACCGGCTTCCTTTGCCAAGACGTTGACCCAATCCGATGCCAACAACGGCGGTGGGTTCTCCGTTCCAAGGTACTGTGCGGAGACGATTTTTCCGCGGCTGGATTACACGGCGGATCCGCCGGTTCAGACGGTGATTGCCAAGGATGTTCACGGCGAGGTTTGGAAGTTTCGGCATATTTATAGAGGGACTCCTCGCCGGCATTTGTTAACTACTGGGTGGAGTACTTTTGTCAATCAGAAGAAGCTCGTCGCCGGCGATTCGATTGTCTTTCTGAGATCCAAAAATGGCGACCTCTGTGTTGGAATCCGGCGAGCCAAACGGGTAATTGGGTGTGCCGCCGATCACCCTTATGGCTGGAATCCCGGCGGTGGAAATTGCATCCCACCTTACGGTGGATTGACGATGTTTCTGAGAGATGAGGACAGCAAGTTGAGTAGAAAAGGGTCTTTGGGTTCTAACGGTGGTGGGAATTTGAGGGGAAAAGGCAAAGTGAGGCCAGAATCAGTGATTGAAGCAGCGGCGCTTGCGGCGAGTGGGCAGCCATTTGAGGTGGTTTATTACCCACGCGCCAGCACGCCGGAGTTCTGTGTCAAGGCCTCATCGGTTCGAGCTGCCATGAGGATCCAGTGGTGCTCTGGTATGAGGTTCAAAATGCCATTTGAGACTGAGGATTCTTCTCGAATCAGTTGGTTTATGGGCACCATTTCTTCTGTTCAAGTTGCTGATCCTATCCGCTGGCCTAATTCTCCATGGCGGCTTCTCCAGGTGACATGGGATGAGCCAGATTTGCTACAGAATGTGAAGCGTGTTAGCCCATGGTTGGTTGAACTGGTATCGAACATGCCCGTCATTCAACTGTCACCGTTCTCTCCACCGAGGAAGAAGTTTCGTCTACCACAACACCCAGACTTTCCCCTCGACAGCCAATTTCCATTGTCGTCGTTTTCGAGCAATACCCTTAGGCCAAGCAGTCCTATGTGTTGTTTATCTGATAACACTTCTGTAGGCATACAGGGAGCCAGGCATACTCAATTTGGAATATCTTTGTCAGATTTCCATCTCAACAACAAACTGCAATTAGGGCTGGTTCCATCCAGTTTTCAGCAGCTTGATTTTCACTCCAGAATTTCCAATAGATCAGTTACAGACCACAAAGACAGCAGCAGTCAGAACTCATCAGCGTTGCTAAACGGGGAAAAGATTGGTCCAAAGTTGGAAAGATCTGATTCGGTGAAGAAGCATCAATTTTTACTCTTTGGTCAGCCTATACTCACTGAACAGCAAATCACTTGCAACTCTACCAGTGACATTCACTCCCCTGAAAAAAGCTCCTTAGATGCGAATCTGAAGAGAGTGAAGTTTCTATCTGATGGCTCAGGATCCACTTTCAAGCAGCAAATTTCTCCAAACAAGTCACCAGGATCAGGATTTCCATGGTACCAGGGTTATCAAGCCACTGAACTCGGCCTAGACATCGGTCACTGCAAGGTATTTATGGAGTCAGAAGATGTGGGTCGGACACTCAACCTTTCGGTCATTGGCTCGTATGAAGAACTATACAGGAGGCTCGCAAGCATGTTCGGAATGGAAAAACCAGACATTCTCAGCCATGTCCTGTACCAAGATGCAACAGGTGCTGTCAAACAAGCTGGAGATAAACCCTTCAGTGACTTTATCAAAACAGCTAGAAGACTGACGATTCTAACCGACTCGGGGTCAGACAAGATCGGAAGGACACTGATGGATGGAATGCGAAGTGCTGAAAATGGATTAGATGCCTCAAACAAGACCGGCCCTTTGAGCATATTTGCCTAG 2601 48.02 MELLREERVEKAGEVRNTRERTEGRIKSEKKQSPNRARLFVWLFCLFPSTKRPRYLGSKRIPTTPNSTDLHRIIIFQSLPFTRPLLSLPIRIPTHPFPFSQTNTTTAFDLTAANLFVFFFSIKEAVLLAINETGFSWPISTEKGITFGENAIIRMKEAEKNLDPQLWHACAGGMVQMPAINSKVFYFPQGHAEHAQATVDFTSSLRIPPLIPCRVLAVKFLADHETDEVYANIRLVPLANNELNFEEEGGFGSNGSENNMEKPASFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYTADPPVQTVIAKDVHGEVWKFRHIYRGTPRRHLLTTGWSTFVNQKKLVAGDSIVFLRSKNGDLCVGIRRAKRVIGCAADHPYGWNPGGGNCIPPYGGLTMFLRDEDSKLSRKGSLGSNGGGNLRGKGKVRPESVIEAAALAASGQPFEVVYYPRASTPEFCVKASSVRAAMRIQWCSGMRFKMPFETEDSSRISWFMGTISSVQVADPIRWPNSPWRLLQVTWDEPDLLQNVKRVSPWLVELVSNMPVIQLSPFSPPRKKFRLPQHPDFPLDSQFPLSSFSSNTLRPSSPMCCLSDNTSVGIQGARHTQFGISLSDFHLNNKLQLGLVPSSFQQLDFHSRISNRSVTDHKDSSSQNSSALLNGEKIGPKLERSDSVKKHQFLLFGQPILTEQQITCNSTSDIHSPEKSSLDANLKRVKFLSDGSGSTFKQQISPNKSPGSGFPWYQGYQATELGLDIGHCKVFMESEDVGRTLNLSVIGSYEELYRRLASMFGMEKPDILSHVLYQDATGAVKQAGDKPFSDFIKTARRLTILTDSGSDKIGRTLMDGMRSAENGLDASNKTGPLSIFA 866
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 44434178 44438531 - Lag0010077.1 Lac9g2590 621516
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac9g2590 866 MobiDBLite consensus disorder prediction 1 31 - -
Lac9g2590 866 SMART B3_2 266 368 IPR003340 GO:0003677(InterPro)
Lac9g2590 866 SUPERFAMILY DNA-binding pseudobarrel domain 261 371 IPR015300 -
Lac9g2590 866 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 161 838 IPR044835 GO:0003677(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Lac9g2590 866 Pfam Auxin response factor 434 517 IPR010525 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Lac9g2590 866 CDD B3_DNA 265 366 IPR003340 GO:0003677(InterPro)
Lac9g2590 866 Gene3D - 264 368 IPR015300 -
Lac9g2590 866 FunFam Auxin response factor 264 368 - -
Lac9g2590 866 MobiDBLite consensus disorder prediction 640 661 - -
Lac9g2590 866 Gene3D - 472 545 - -
Lac9g2590 866 ProSiteProfiles B3 DNA-binding domain profile. 266 368 IPR003340 GO:0003677(InterPro)
Lac9g2590 866 Pfam B3 DNA binding domain 266 367 IPR003340 GO:0003677(InterPro)
Lac9g2590 866 FunFam Auxin response factor 472 545 - -
Lac9g2590 866 Coils Coil 1 21 - -
Lac9g2590 866 ProSiteProfiles PB1 domain profile. 754 834 IPR053793 -
Lac9g2590 866 MobiDBLite consensus disorder prediction 645 659 - -
Lac9g2590 866 Gene3D - 754 838 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac6g3115 Lac-Chr6:48549666 Lac9g2590 Lac-Chr9:44434178 3.60E-71 dispersed
Lac8g1280 Lac-Chr8:27917084 Lac9g2590 Lac-Chr9:44434178 1.20E-10 dispersed
Lac9g2568 Lac-Chr9:44277163 Lac9g2590 Lac-Chr9:44434178 4.70E-41 dispersed
Lac6g0864 Lac-Chr6:7584696 Lac9g2590 Lac-Chr9:44434178 4.60E-100 transposed
Lac1g2132 Lac-Chr1:42764286 Lac9g2590 Lac-Chr9:44434178 3.50E-262 wgd
Lac8g2412 Lac-Chr8:42232772 Lac9g2590 Lac-Chr9:44434178 1.50E-220 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
24510 PF02362 B3 1.80E-21 CL0405 Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac9g2590 K14486 - csv:101216500 1340.1