Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac9g2595 ATGTGTCGAGATGAAGATTTTTTGTTTGAGATACGAGATGGAGAAATTATTGGAGACCCAGTTTCTGTTTTGGACTGTCTCTCTGTCGCTCTCGTTCCGTCTCTTTCTCATACTCATGGAAGCGCTTCTTCTGGGTTGATTCCATTAGAACTGCAGCCAAAGGTTTCATTTGGGAAGATCTTTATGGCTTATGGTAGTTCTAGATCCGTAAGATTCCAAGATGATCTCGAATCATCTACCCTGCCTACTATCAATGGTGGTGGTGTGAAGAAGATCATATACAACATTGATGGCACACAAATACCGGAATCGAGCGGCAAGAGAACTGAGGTTCCTGGGAAGTCTGGAAGATCTTTGAGAGCGAAAGTTTTGTCTAGAGTTTTCTCTGAGGATTATGAGAGAGTGCAGAGAAAAATATTGGATCCTAGGGGACAAGCCATAAGGCGATGGAATAAGATATTTTTAGTAGCTTGTTTAGTCTCTTTGTTTGTAGACCCGCTTTTCTTTTACTTGCCTGTGGTCCGGAATGAGGTCTGCATCGATATAGGAGTAGGTCTCGAAGTCGTCCTCACAACTATAAGATCAATAGCTGATGTTTTTTACATGATTCAGATTTTCATTAAGTTCCGTACAGCTTATGTTGCGCCCTCTTCTCGTGTATTTGGGAGAGGAGAGCTTGTTATAGATCCTTGTAAGATAGCAATAAGGTATCTACGCCATGGTTTCTGGATTGATTTCATTGCAGCCGTGCCAGTTCCTCAGGTACTGATCTGGATTGTCATCCCCAACCTTAGTGGTTCAACAATGACAAACACCAAGAACTTCCTAAGGTTCTTTCTCATATTCCAGTACCTGCCGAGGCTTTTTCTCATATTTCCTCTCTCAACACAAATTGTTAAGGCCACTGGACTTGTGACACAAACAGCATGGGCCGGAGCTGCTTATAACCTGATTCTTTATATGTTGGCAAGCCATGTTTTAGGAGCCTGCTGGTACCTTCTTTCAATCGAGCGACAAGAAGCATGCTGGAGAACGCTTTGCAAGTTTGACAAATCTTGTAAAGATGGATTCTTCGACTGTCATAAGGCCGATGACCCTCAAAGGGACTCGTGGTTTAAGACAAGTAACATTACGAGTTCCTGCAATCCAAATGATCCCTTTTATCAATTTGGTATATACGGTGATGCGATAACTTTTGATGTCACAACCTCACCATTTTTCAACAAGTACTTCTACTGTCTTTGGTGGGGCCTGAAAAATCTGAGTTCCTTGGGGCAAAATCTAGCCACAAGCACTTTTGTTGGGGAAATAATATTTGCCATAATAGTGGCAACTCTTGGACTGGTTTTGTTTGCATTGCTCATTGGCAATATGCAGAAATACCTCCAATCTACGACTGTTCGGTTAGAAGAGTGGAGAATAAGGAGAACTGATACAGAACAATGGATGCATCACAGGCAACTACCTCCAGAGCTCAGACAATCTGTCCGCAGATATGATCAGTACAAGTGGGTAGCAACTCGAGGAGTCGATGAAGAAGCCCTGCTTAGAAGCCTTCCATTGGACCTACGAAGAGACATAAAACGTCATCTTTGCCTCGACCTCGTTCGAAGGGTTCCATTGTTTGATCAAATGGATGAAAGAATGCTAGACGCAATATGCGAAAGGCTCAAACCTGCCTTGAGCACAGAAGGCACATTTCTCGTGCGAGAAGGCGACCCGGTCAATGAAATGCTATTCATAATCAGAGGTCATCTCGATTCATACACCACTAACGGCGGTAGAACTGGATTTTTCAACTCCTGTCGTATCGGCCCAGGTGATTTCTGTGGTGAGGAACTGCTGACTTGGGCTCTCGATCCTCGTCCAAGCGTCGTACTTCCTTCTTCCACTCGGACAGTCAAAGCCATATCTGAAGTAGAAGCATTTGCTCTCATAGCAGAGGACTTGAAATTTGTATCCTCCCAGTTCAGAAGACTCCACAGCAAACAACTCAGACACAAGTTTCGATTCTACTCGCATCAATGGCGAACATGGGCCGCTTGCTTTGTTCAAGCAGCTTGGCGACGATATAAGAGACGCAAGGAAAGAGCTGAGCTCAGGGCTAGAGAGAGCTATCCAGCTACGAAGCTCGAGTCCCCACTTTCACCACAGACTGCATCAAACGTGGATGCACGTTCGGGAAACACTAGAAGGGGCATGAATAAGCGTTGTGCGTCGGATGCTGGAGTCGTAAGCTCGTTGCAGAAGCCAGAAGAGCCTGACTTCTCCATTGTTGAGGAATGA 2286 44.62 MCRDEDFLFEIRDGEIIGDPVSVLDCLSVALVPSLSHTHGSASSGLIPLELQPKVSFGKIFMAYGSSRSVRFQDDLESSTLPTINGGGVKKIIYNIDGTQIPESSGKRTEVPGKSGRSLRAKVLSRVFSEDYERVQRKILDPRGQAIRRWNKIFLVACLVSLFVDPLFFYLPVVRNEVCIDIGVGLEVVLTTIRSIADVFYMIQIFIKFRTAYVAPSSRVFGRGELVIDPCKIAIRYLRHGFWIDFIAAVPVPQVLIWIVIPNLSGSTMTNTKNFLRFFLIFQYLPRLFLIFPLSTQIVKATGLVTQTAWAGAAYNLILYMLASHVLGACWYLLSIERQEACWRTLCKFDKSCKDGFFDCHKADDPQRDSWFKTSNITSSCNPNDPFYQFGIYGDAITFDVTTSPFFNKYFYCLWWGLKNLSSLGQNLATSTFVGEIIFAIIVATLGLVLFALLIGNMQKYLQSTTVRLEEWRIRRTDTEQWMHHRQLPPELRQSVRRYDQYKWVATRGVDEEALLRSLPLDLRRDIKRHLCLDLVRRVPLFDQMDERMLDAICERLKPALSTEGTFLVREGDPVNEMLFIIRGHLDSYTTNGGRTGFFNSCRIGPGDFCGEELLTWALDPRPSVVLPSSTRTVKAISEVEAFALIAEDLKFVSSQFRRLHSKQLRHKFRFYSHQWRTWAACFVQAAWRRYKRRKERAELRARESYPATKLESPLSPQTASNVDARSGNTRRGMNKRCASDAGVVSSLQKPEEPDFSIVEE 761
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 44480023 44484498 - Lag0010082.1 Lac9g2595 621521
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac9g2595 761 Gene3D Jelly Rolls 539 659 IPR014710 -
Lac9g2595 761 FunFam Cyclic nucleotide-gated ion channel 1 468 532 - -
Lac9g2595 761 Gene3D Helix hairpin bin 468 532 - -
Lac9g2595 761 Pfam Cyclic nucleotide-binding domain 564 624 IPR000595 -
Lac9g2595 761 Gene3D - 150 465 - -
Lac9g2595 761 PRINTS EAG/ELK/ERG potassium channel family signature 410 427 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Lac9g2595 761 PRINTS EAG/ELK/ERG potassium channel family signature 205 214 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Lac9g2595 761 PRINTS EAG/ELK/ERG potassium channel family signature 504 511 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Lac9g2595 761 PRINTS EAG/ELK/ERG potassium channel family signature 322 332 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Lac9g2595 761 PRINTS EAG/ELK/ERG potassium channel family signature 436 447 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Lac9g2595 761 PRINTS EAG/ELK/ERG potassium channel family signature 454 463 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Lac9g2595 761 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 120 724 - -
Lac9g2595 761 Pfam Ion transport protein 149 468 IPR005821 GO:0005216(InterPro)|GO:0006811(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lac9g2595 761 FunFam Cyclic nucleotide-gated ion channel 1 539 657 - -
Lac9g2595 761 SUPERFAMILY Voltage-gated potassium channels 141 463 - -
Lac9g2595 761 ProSiteProfiles cAMP/cGMP binding motif profile. 541 638 IPR000595 -
Lac9g2595 761 MobiDBLite consensus disorder prediction 702 761 - -
Lac9g2595 761 CDD CAP_ED 541 672 IPR000595 -
Lac9g2595 761 SMART cnmp_10 541 672 IPR000595 -
Lac9g2595 761 SUPERFAMILY cAMP-binding domain-like 471 666 IPR018490 -
Lac9g2595 761 MobiDBLite consensus disorder prediction 711 729 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac8g0435 Lac-Chr8:5586285 Lac9g2595 Lac-Chr9:44480023 1.50E-207 dispersed
Lac2g0692 Lac-Chr2:5204642 Lac9g2595 Lac-Chr9:44480023 3.10E-213 transposed
Lac3g0268 Lac-Chr3:1908412 Lac9g2595 Lac-Chr9:44480023 1.70E-206 transposed
Lac3g0695 Lac-Chr3:5380225 Lac9g2595 Lac-Chr9:44480023 2.90E-208 transposed
Lac5g1656 Lac-Chr5:33616474 Lac9g2595 Lac-Chr9:44480023 2.00E-105 transposed
Lac5g2756 Lac-Chr5:45967472 Lac9g2595 Lac-Chr9:44480023 2.20E-101 transposed
Lac8g0338 Lac-Chr8:4106672 Lac9g2595 Lac-Chr9:44480023 3.20E-202 transposed
Lac8g2728 Lac-Chr8:44715561 Lac9g2595 Lac-Chr9:44480023 6.40E-103 transposed
Lac1g2137 Lac-Chr1:42805249 Lac9g2595 Lac-Chr9:44480023 4.60E-240 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac9g2595 K05391 - csv:101210775 1333.16