Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac9g2599 ATGGAACCAACCCAGGCCCTTGCCAGCTCCAACAATGGCCACGTTTCGCTCAATGGGTTTTGCTCGAAGGATCCACTCTACTGGGCTGCGGCGGCCGAGGGTCTCAAAGGGAGCCACGTCGACGAGGTCAAGAGGATGGTCGCCGAGTACCGCCGCCCGGTCGTCCGGCTCGGCGGAGAGACCCTGACCGTTGGGCAGGTGGCCGCGGTGGCTCTCCACGACGGCGGAGTGAGGGTCGACCTGAATGAGTCGGCAAGGGCTGGTGTGAAGGCGAGTAGTGATTGGGTGATGGATAGCATGACCAAAGGAACTGATAGTTATGGAGTCACCACCGGCTTTGGTGCAACCTCTCATAGAAGGACCAACCAAGGAGCTGCCTTGCAGAAGGAGCTTATTAGATTCTTGAACGCCGGAATATTTGGGAATGGAACAGAGTCGAACCATACGCTGCCGCACACCGCCACAAGAGCCGCCATGTTGGTCCGAATCAACACCCTTCTCCAAGGCTATTCCGGCATCAGATTCGAGATTTTGGAGTCAATTACCAAGCTCCTCAACCACAACGTCACTCCCTGCCTTCCACTGCGGGGCACCATCACGGCCTCCGGTGACTTGGTTCCCTTTTCCTACCTCGCCGGCCTTTTGACCGGCCGGCCCAATGCCAAGGCCGTCGGCCCTGCCGGCGAGATGCTCGATGCCGGAACAGCCTTTAAACTCGCCGGCATTGGTGGGTTCTTCGAGCTGCAGCCTAAAGAGGGTCTCGCGCTTGTCAATGGGACCGGTGTTGGTTCTGGGTTGGCTTCCATTGTTCTGTTTGAGGCCAATGTACTTGCTCTTCTGTCCGAAGTTATTTCGGCAATTTTTGCTGAAGTTATGCAGGGAAAGCCCGAGTTTACTGATCATTTGACTCATAAGTTGAAGCACCATCCGGGTCAGATTGAAGCTGCGGCTATAATGGAACACATTTTGGACGGGAGTGCTTTCATTAAAGATGCTCAGAAGTTACATGAGTTGGATCCTCTGCAAAAGCCGAAACAAGATCGTTATGCTCTTCGGACTTCTCCTCAATGGTTAGGCCCTCAAATTGAAGTGATTCGACATTCGACGAGATCGATCGAGAGAGAGATCAACTCGGTGAACGACAATCCATTGATTGATGTTTCGAGAAATAAAGCTCTACATGGAGGCAATTTTCAAGGAACTCCAATTGGGGTGTCCATGGACAACACTAGATTGGCTCTTGCCTCAATTGGAAAGCTCTTGTTTGCTCAATTCTCTGAGCTTGTGAATGATTTCTATAACAATGGGCTGCCTTCAAACCTCTCCGAGGAAGTAATCCAAGCTTGGATTATGGATTCAAAGGGGCCGAAATCGCCATGGCTTCTTATTGCTCGGAGTTGCAGTACTTGGCAAATCCGGTCACCAACCATGTTCAAAGCGCGGAGCAACACAACCAAGATGTGA 1464 52.32 MEPTQALASSNNGHVSLNGFCSKDPLYWAAAAEGLKGSHVDEVKRMVAEYRRPVVRLGGETLTVGQVAAVALHDGGVRVDLNESARAGVKASSDWVMDSMTKGTDSYGVTTGFGATSHRRTNQGAALQKELIRFLNAGIFGNGTESNHTLPHTATRAAMLVRINTLLQGYSGIRFEILESITKLLNHNVTPCLPLRGTITASGDLVPFSYLAGLLTGRPNAKAVGPAGEMLDAGTAFKLAGIGGFFELQPKEGLALVNGTGVGSGLASIVLFEANVLALLSEVISAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSAFIKDAQKLHELDPLQKPKQDRYALRTSPQWLGPQIEVIRHSTRSIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLALASIGKLLFAQFSELVNDFYNNGLPSNLSEEVIQAWIMDSKGPKSPWLLIARSCSTWQIRSPTMFKARSNTTKM 487
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 44527799 44531287 + Lag0010086.1 Lac9g2599 621525
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac9g2599 487 Gene3D Fumarase/aspartase (Central domain) 261 451 - -
Lac9g2599 487 PANTHER HISTIDINE AMMONIA-LYASE 20 444 IPR001106 GO:0016841(PANTHER)|GO:0045548(PANTHER)
Lac9g2599 487 Gene3D - 16 260 IPR024083 -
Lac9g2599 487 NCBIfam phenylalanine ammonia-lyase 24 444 IPR005922 GO:0005737(InterPro)|GO:0006559(InterPro)|GO:0016841(InterPro)
Lac9g2599 487 Pfam Aromatic amino acid lyase 62 443 IPR001106 -
Lac9g2599 487 FunFam Phenylalanine ammonia-lyase 16 260 - -
Lac9g2599 487 SUPERFAMILY L-aspartase-like 24 442 IPR008948 GO:0003824(InterPro)
Lac9g2599 487 CDD PAL-HAL 60 444 IPR001106 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac1g2141 Lac-Chr1:42845941 Lac9g2599 Lac-Chr9:44527799 1.60E-206 wgd
Lac8g2407 Lac-Chr8:42161594 Lac9g2599 Lac-Chr9:44527799 6.10E-193 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac9g2599 K10775 - csv:101218156 801.971