Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lac9g2623 | ATGCTTTCACTGCGTTCATGCTACTATCTACGCCCCGTCACATTGCCTCATCCCCAATTCAAGAATCTCATCTTCTCCGACAAACCTCCTTCTTTCAAACCCATCTTTCAGAAATTTGTTTCAGCAATGTCTTCTCGCCCTTCTGCTTTCGATGCTCTCATGTCCGGTGCGCGGGCCGCTGCCAAGAAGAAGCCTGTGAATTCTTCCCCCAAGAAGCGTAAAGCCCTAGATTCTTTAGACCCTCCTCCGAAACCTAGCTCTTCACTTGCTCTGGAGTCAACGCCGCCTATTGAATCGCAGGGCGGCAACTCTACCTCAACTTCGGACAATCATGGAGGTCCTCATCTGGGAAAGTCCGAGGACGCTGTAAATTTGGGAGAAACCAAGTTGCGTCAGGATAATGGTGGCGGTGTTGGAACCAAAAATGGGGCGGCGGTGAACAAGACGTACGCGACTAATGTTCAAGAAAGAACTGCGAAATTGAAGAGCTCTATTCCAGAGTTGAAAAAGAAGGCCAAGGATTTCAATTCGAAAAATGTTGCATGTTGGAAAGAGGGCGAACGGGTTCCCTGTTTGTTTCTGTGTTTGGGCTTCGATATGATTTCGGAGGAGTCTAGTAGGATTACTATCACTGATATAGTGTGCAACATGTTGAGGACCGTCATGGATACTACACCTGACGACCTGGTAGCCACTGTGTATCTTTTGGCGAATAAGATTGCACCAGCACACGAAGGGCTTGAACTGGGGATTGGGGATGCTTCTATTATCAAAGCTCTTTCCGAGGCATTTGGGAGGACAGAGGCACAGGTTAAAAAACAGTACAAGGAATTGGGAGATTTAGGTCTTGTTGCCAAAGCGAGCCGTTCATCACAATCTATGATGCGAAAGCCCGATGCTTTAACTATTGCCAAAGTATTTGACACATTTCGGCTGATTGCTAAGGAATCTGGCAAGGATAGTCAAGAGAAGAAAAAGAACCATATCAAGTCACTGCTTGTTGCTGCCACTGACTGCGAACCTTTATACCTGATCAGATTACTGCAGACAAAATTGCGGATTGGATTGGCTGAGCAGACTCTTTTAGCTGCACTAGGGCAAGCTGCTGTATATGCTGAAAAACATTCAACGCCACCACCAAACGTTCAATCTCCTCTAGAAGAGGCTGCTAAGATTGTAAAGCAGGTGTATTCTATACTCCCTGTTTATGATAAACTTGTCCCTGCACTTCTTAGTGGTGGTGTGTGGAATCTTTCAAAAACATGCAACTTTACACCGGGAATTCCAATTGGACCCATGCTGGCAAAACCAACAAAGGGAGTGTCCGAGATCTTAAATAAATTTCAGGGTTTGGAATTTACTTGTGAATACAAATATGATGGGGAACGTGCCCAGATACATTACTTGGAAGATGGTTCAGTTGAGATATATAGTCGAAATGCTGAACGAAACACTGGAAAGTTCCCTGATGTTGTTCTCACGGTATCAAGAATAAAGAAACCATCTGTACGATCATTTATTTTGGATTGTGAGCTTGTTGCTTATGATCGTGGAAAACAAAAGATTCTGCCTTTCCAGATTCTGAGTACCCGAGCTCGCAAGAATGTGGCCGTGAGTGATATTAAGGTTGAAGTTTGTGTATTTGCTTTTGATTTACTGTATCTTGATGGTCAACCACTTATCCAGAGAGAACTTAATGTTCGCCGAGAGCTTCTCTATGACTCATTTATGGAAGAACCTGGATATTTTCAATTTGCCACAGCAATAACAACAAACGATCTTGAGGAAATACAGAAATTCCTCGATGCATCTGTTGATCAAAGTTGTGAGGGTTTAATTATCAAAACATTGAACCGGGATGCTACCTATGAGCCTTCCAAGAGGTCACATAACTGGTTAAAACTGAAGAAGGATTACATAGACAGCATAGGGGATTCGCTTGATCTGGTACCAATTGCTGCTTTCCATGGCCGTGGGAAGCGTACAGGTGTCTATGGCGCATTCCTCCTTGCCTGTTATGACAATGACAATGAAGAATTTCAAAGCATTTGTAAGATAGGAACTGGTTTTTCTGAAGCAATGCTTGAGGAACGTTCTGCTAGTCTCCGTTCTAAAGTCATTCCTGAACCAAAGTCATATTATCGGTTTGGAGATACAATCAATCCAGATGTTTGGTTTGAGCCTACTGAGGTCTGGGAGGTTAAAGCAGCAGACTTGACTATTAGCCCAGTTCATCGTGCAGGAGTTGGCATTGTGGATTCTGACAAGGGAATTTCTCTTCGATTTCCACGTCTTGTTCGAGTAAGGAAAGACAAAAATCCGGAGGAAGCCTCATCATCAGAGCAGGTTGCCGACATGTATAATGCTCAGAAACACAACCACCAAAACAATCAAGATGACAATGAAGACGACTGA | 2415 | 43.81 | MLSLRSCYYLRPVTLPHPQFKNLIFSDKPPSFKPIFQKFVSAMSSRPSAFDALMSGARAAAKKKPVNSSPKKRKALDSLDPPPKPSSSLALESTPPIESQGGNSTSTSDNHGGPHLGKSEDAVNLGETKLRQDNGGGVGTKNGAAVNKTYATNVQERTAKLKSSIPELKKKAKDFNSKNVACWKEGERVPCLFLCLGFDMISEESSRITITDIVCNMLRTVMDTTPDDLVATVYLLANKIAPAHEGLELGIGDASIIKALSEAFGRTEAQVKKQYKELGDLGLVAKASRSSQSMMRKPDALTIAKVFDTFRLIAKESGKDSQEKKKNHIKSLLVAATDCEPLYLIRLLQTKLRIGLAEQTLLAALGQAAVYAEKHSTPPPNVQSPLEEAAKIVKQVYSILPVYDKLVPALLSGGVWNLSKTCNFTPGIPIGPMLAKPTKGVSEILNKFQGLEFTCEYKYDGERAQIHYLEDGSVEIYSRNAERNTGKFPDVVLTVSRIKKPSVRSFILDCELVAYDRGKQKILPFQILSTRARKNVAVSDIKVEVCVFAFDLLYLDGQPLIQRELNVRRELLYDSFMEEPGYFQFATAITTNDLEEIQKFLDASVDQSCEGLIIKTLNRDATYEPSKRSHNWLKLKKDYIDSIGDSLDLVPIAAFHGRGKRTGVYGAFLLACYDNDNEEFQSICKIGTGFSEAMLEERSASLRSKVIPEPKSYYRFGDTINPDVWFEPTEVWEVKAADLTISPVHRAGVGIVDSDKGISLRFPRLVRVRKDKNPEEASSSEQVADMYNAQKHNHQNNQDDNEDD | 804 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 9 | 44726842 | 44734273 | - | Lag0010110.1 | Lac9g2623 | 621549 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lac9g2623 | 804 | Pfam | ATP dependent DNA ligase domain | 432 | 636 | IPR012310 | GO:0003910(InterPro)|GO:0005524(InterPro)|GO:0006281(InterPro)|GO:0006310(InterPro) | |
| Lac9g2623 | 804 | PANTHER | DNA LIGASE 1/3 FAMILY MEMBER | 161 | 801 | IPR050191 | GO:0003910(PANTHER)|GO:0005634(PANTHER)|GO:0005739(PANTHER)|GO:0006266(PANTHER)|GO:0006273(PANTHER) | |
| Lac9g2623 | 804 | MobiDBLite | consensus disorder prediction | 90 | 113 | - | - | |
| Lac9g2623 | 804 | NCBIfam | ATP-dependent DNA ligase | 248 | 787 | IPR000977 | GO:0003910(InterPro)|GO:0005524(InterPro)|GO:0071897(InterPro) | |
| Lac9g2623 | 804 | SUPERFAMILY | ATP-dependent DNA ligase DNA-binding domain | 172 | 423 | IPR036599 | GO:0003677(InterPro)|GO:0003910(InterPro)|GO:0006281(InterPro)|GO:0006310(InterPro) | |
| Lac9g2623 | 804 | FunFam | DNA ligase | 432 | 638 | - | - | |
| Lac9g2623 | 804 | ProSitePatterns | ATP-dependent DNA ligase signature 2. | 610 | 636 | IPR016059 | GO:0003909(InterPro) | |
| Lac9g2623 | 804 | Gene3D | DNA ligase/mRNA capping enzyme | 461 | 586 | - | - | |
| Lac9g2623 | 804 | ProSitePatterns | ATP-dependent DNA ligase AMP-binding site. | 456 | 464 | IPR016059 | GO:0003909(InterPro) | |
| Lac9g2623 | 804 | MobiDBLite | consensus disorder prediction | 770 | 804 | - | - | |
| Lac9g2623 | 804 | MobiDBLite | consensus disorder prediction | 779 | 794 | - | - | |
| Lac9g2623 | 804 | FunFam | DNA ligase | 167 | 434 | - | - | |
| Lac9g2623 | 804 | Pfam | ATP dependent DNA ligase C terminal region | 661 | 772 | IPR012309 | GO:0003910(InterPro)|GO:0006281(InterPro)|GO:0006310(InterPro) | |
| Lac9g2623 | 804 | SUPERFAMILY | Nucleic acid-binding proteins | 644 | 790 | IPR012340 | - | |
| Lac9g2623 | 804 | MobiDBLite | consensus disorder prediction | 60 | 120 | - | - | |
| Lac9g2623 | 804 | ProSiteProfiles | ATP-dependent DNA ligase family profile. | 538 | 674 | IPR012310 | GO:0003910(InterPro)|GO:0005524(InterPro)|GO:0006281(InterPro)|GO:0006310(InterPro) | |
| Lac9g2623 | 804 | Gene3D | - | 442 | 640 | - | - | |
| Lac9g2623 | 804 | Gene3D | - | 641 | 803 | IPR012340 | - | |
| Lac9g2623 | 804 | CDD | Adenylation_DNA_ligase_I_Euk | 421 | 639 | - | - | |
| Lac9g2623 | 804 | SUPERFAMILY | DNA ligase/mRNA capping enzyme, catalytic domain | 424 | 642 | - | - | |
| Lac9g2623 | 804 | CDD | OBF_DNA_ligase_I | 644 | 789 | - | - | |
| Lac9g2623 | 804 | Gene3D | - | 167 | 434 | IPR036599 | GO:0003677(InterPro)|GO:0003910(InterPro)|GO:0006281(InterPro)|GO:0006310(InterPro) | |
| Lac9g2623 | 804 | Pfam | DNA ligase N terminus | 194 | 365 | IPR012308 | GO:0003677(InterPro)|GO:0003910(InterPro)|GO:0006281(InterPro)|GO:0006310(InterPro) | |
| Lac9g2623 | 804 | FunFam | DNA ligase | 641 | 800 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lac4g0238 | Lac-Chr4:5038524 | Lac9g2623 | Lac-Chr9:44726842 | 2.30E-21 | dispersed | |
| Lac8g0553 | Lac-Chr8:8260237 | Lac9g2623 | Lac-Chr9:44726842 | 2.40E-74 | dispersed | |
| Lac9g1390 | Lac-Chr9:31569192 | Lac9g2623 | Lac-Chr9:44726842 | 4.20E-47 | dispersed | |
| Lac9g2623 | Lac-Chr9:44726842 | Lac4g0241 | Lac-Chr4:5085992 | 8.10E-37 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lac9g2623 | K10747 | - | csv:101213447 | 1433.31 |