Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac9g2627 ATGTTTGATATGGAGCAATTTGGGAAGCAGCATTTAATGATGAACATCAATGACTTTGAGCTTCAAGATTTCATCCATGGCGACAACCTCGATCTGGTCAATCTCATTCGCAGAGAACACGAAAATTCAATACTCAACTTTGATCTTGATTTCATGAATGGTTGCTCGGTCGACAATCGTCTCGATCCAAGCGCCGAGTACATTCTAGATTCCAATTTGGTCATGAATTCTGATCCTAATTCACTGTTTAGTACATTGGAGAGTTTCAACAGTATCATGAAAGAAGTCGAAAACGAAAACGAAGACGAAGACGAAGACGAAGACTCTTCCATCACAATGACGACAACAAAGAAGCCAAAGGTCGATAGATCAAGAACTTTGATTTCCGAGCGAAGGAGGAGAGGAAGGATGAAGGAAAAGCTCTATGCATTGCGTTCATTGGTTCCAAATATAACCAAGATGGACAAGGCTTCCATTGTTGGGGATGCAGTGCTATACGTGAAAGAGCTTCAAATGCAGGCCAAGAAGCTCAAAGCAGAGATATCAGTTTTGGAATCCTCAATCAATGAAAAACAGACACATCATCGCCAAACCGATCAAACCCACAAGAAGATTCAAACTTCACGTTCAGATCAATTCTTCCCCACCAAAATCATTCAGCTGGATGTGTTTCAAGTGGAGGAAAGAGGCTTTTATTTGAGGCTGGTTTGCAAGATGGGTGAAAGAGTAGCAATTTCTCTTTACAAAGTTCTTGAATCCCTCACCAGTTTCAATATTCAAAGCTCCAACTTGGCCTCTGCTTCTGACAGATTCATTCTCACTGCTACAATCAATGTGAGAGATTGTGAGGAGGACATGAACTTGCCAAATCTGAAGCTTTGGCTTACTGGGGCACTTCTTAATCATGGATTTGAGTTTTAA 921 41.04 MFDMEQFGKQHLMMNINDFELQDFIHGDNLDLVNLIRREHENSILNFDLDFMNGCSVDNRLDPSAEYILDSNLVMNSDPNSLFSTLESFNSIMKEVENENEDEDEDEDSSITMTTTKKPKVDRSRTLISERRRRGRMKEKLYALRSLVPNITKMDKASIVGDAVLYVKELQMQAKKLKAEISVLESSINEKQTHHRQTDQTHKKIQTSRSDQFFPTKIIQLDVFQVEERGFYLRLVCKMGERVAISLYKVLESLTSFNIQSSNLASASDRFILTATINVRDCEEDMNLPNLKLWLTGALLNHGFEF 306
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 44764774 44766073 + Lag0010114.1 Lac9g2627 621553
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac9g2627 306 Coils Coil 86 106 - -
Lac9g2627 306 MobiDBLite consensus disorder prediction 96 125 - -
Lac9g2627 306 MobiDBLite consensus disorder prediction 110 125 - -
Lac9g2627 306 FunFam Basic helix-loop-helix (BHLH) DNA-binding superfamily protein 117 187 - -
Lac9g2627 306 Coils Coil 167 194 - -
Lac9g2627 306 SMART finulus 127 176 IPR011598 GO:0046983(InterPro)
Lac9g2627 306 Gene3D - 112 187 IPR036638 GO:0046983(InterPro)
Lac9g2627 306 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 121 170 IPR011598 GO:0046983(InterPro)
Lac9g2627 306 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 98 304 IPR051358 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0043565(PANTHER)
Lac9g2627 306 Pfam Helix-loop-helix DNA-binding domain 126 171 IPR011598 GO:0046983(InterPro)
Lac9g2627 306 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 123 198 IPR036638 GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac6g1870 Lac-Chr6:31639255 Lac9g2627 Lac-Chr9:44764774 1.30E-07 dispersed
Lac6g2250 Lac-Chr6:39503693 Lac9g2627 Lac-Chr9:44764774 3.20E-16 dispersed
Lac8g0052 Lac-Chr8:843746 Lac9g2627 Lac-Chr9:44764774 4.70E-09 dispersed
Lac9g2627 Lac-Chr9:44764774 Lac11g2553 Lac-Chr11:41575479 2.80E-06 dispersed
Lac9g2627 Lac-Chr9:44764774 Lac4g1294 Lac-Chr4:30985873 7.20E-10 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
24513 PF00010 HLH 2.80E-09 No_clan Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac9g2627 K26214 - csv:101213681 442.58