Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac9g2635 ATGGGTCAGATTCAGTACTCTGAGAAGTACTTCGACGACACTTACGAGTATAGGCATGTGGTGCTCCCACCCGAAGTGGCAAAGTTGCTTCCCAAGAATCGCCTGCTCTCGGAAAACGAGTGGCGTGCGATTGGAGTTCAGCAGAGTCGTGGGTGGGTGCACTATGCTATTCATCGTCCCGAGCCGCACATCATGCTATTCAGGAGGCCCCTGAACTACCAACAGCAGCAGGAGAACCTCGCTCAACAAAACGTGCTTGCTGCTAAATGA 270 52.59 MGQIQYSEKYFDDTYEYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRPEPHIMLFRRPLNYQQQQENLAQQNVLAAK 89
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 44799783 44800698 - Lag0010122.1 Lac9g2635 621561
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac9g2635 89 Pfam Cyclin-dependent kinase regulatory subunit 4 70 IPR000789 GO:0016538(InterPro)
Lac9g2635 89 SMART CKS_2 3 72 IPR000789 GO:0016538(InterPro)
Lac9g2635 89 ProSitePatterns Cyclin-dependent kinases regulatory subunits signature 1. 6 24 IPR000789 GO:0016538(InterPro)
Lac9g2635 89 FunFam Cyclin-dependent kinases regulatory subunit 1 84 - -
Lac9g2635 89 Gene3D - 1 83 IPR036858 GO:0016538(InterPro)
Lac9g2635 89 SUPERFAMILY Cell cycle regulatory proteins 1 83 IPR036858 GO:0016538(InterPro)
Lac9g2635 89 PRINTS Cyclin-dependent kinase regulatory subunit signature 3 17 IPR000789 GO:0016538(InterPro)
Lac9g2635 89 PRINTS Cyclin-dependent kinase regulatory subunit signature 40 54 IPR000789 GO:0016538(InterPro)
Lac9g2635 89 PRINTS Cyclin-dependent kinase regulatory subunit signature 18 32 IPR000789 GO:0016538(InterPro)
Lac9g2635 89 PRINTS Cyclin-dependent kinase regulatory subunit signature 55 69 IPR000789 GO:0016538(InterPro)
Lac9g2635 89 PANTHER CYCLIN-DEPENDENT KINASES REGULATORY SUBUNIT/60S RIBOSOME SUBUNIT BIOGENESIS PROTEIN NIP7 3 83 - GO:0000307(PANTHER)|GO:0007346(PANTHER)|GO:0019005(PANTHER)|GO:0019901(PANTHER)|GO:0042393(PANTHER)|GO:0043130(PANTHER)|GO:0061575(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac8g1064 Lac-Chr8:22046523 Lac9g2635 Lac-Chr9:44799783 5.90E-11 dispersed
Lac9g2635 Lac-Chr9:44799783 Lac10g2066 Lac-Chr10:29611982 4.90E-44 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac9g2635 K02219 - rcu:8275256 171.785