Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac9g2635 ATGGGTCAGATTCAGTACTCTGAGAAGTACTTCGACGACACTTACGAGTATAGGCATGTGGTGCTCCCACCCGAAGTGGCAAAGTTGCTTCCCAAGAATCGCCTGCTCTCGGAAAACGAGTGGCGTGCGATTGGAGTTCAGCAGAGTCGTGGGTGGGTGCACTATGCTATTCATCGTCCCGAGCCGCACATCATGCTATTCAGGAGGCCCCTGAACTACCAACAGCAGCAGGAGAACCTCGCTCAACAAAACGTGCTTGCTGCTAAATGA 270 52.59 MGQIQYSEKYFDDTYEYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRPEPHIMLFRRPLNYQQQQENLAQQNVLAAK 89
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 44799783 44800698 - Lag0010122.1 Lac9g2635 621561

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lac9g2635 89 Pfam Cyclin-dependent kinase regulatory subunit 4 70 IPR000789 GO:0016538(InterPro)
Lac9g2635 89 SMART CKS_2 3 72 IPR000789 GO:0016538(InterPro)
Lac9g2635 89 ProSitePatterns Cyclin-dependent kinases regulatory subunits signature 1. 6 24 IPR000789 GO:0016538(InterPro)
Lac9g2635 89 FunFam Cyclin-dependent kinases regulatory subunit 1 84 - -
Lac9g2635 89 Gene3D - 1 83 IPR036858 GO:0016538(InterPro)
Lac9g2635 89 SUPERFAMILY Cell cycle regulatory proteins 1 83 IPR036858 GO:0016538(InterPro)
Lac9g2635 89 PRINTS Cyclin-dependent kinase regulatory subunit signature 3 17 IPR000789 GO:0016538(InterPro)
Lac9g2635 89 PRINTS Cyclin-dependent kinase regulatory subunit signature 40 54 IPR000789 GO:0016538(InterPro)
Lac9g2635 89 PRINTS Cyclin-dependent kinase regulatory subunit signature 18 32 IPR000789 GO:0016538(InterPro)
Lac9g2635 89 PRINTS Cyclin-dependent kinase regulatory subunit signature 55 69 IPR000789 GO:0016538(InterPro)
Lac9g2635 89 PANTHER CYCLIN-DEPENDENT KINASES REGULATORY SUBUNIT/60S RIBOSOME SUBUNIT BIOGENESIS PROTEIN NIP7 3 83 - GO:0000307(PANTHER)|GO:0007346(PANTHER)|GO:0019005(PANTHER)|GO:0019901(PANTHER)|GO:0042393(PANTHER)|GO:0043130(PANTHER)|GO:0061575(PANTHER)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac9g2635 K02219 - - rcu:8275256 171.785
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac8g1064 Lac-Chr8:22046523 Lac9g2635 Lac-Chr9:44799783 5.90E-11 dispersed
Lac9g2635 Lac-Chr9:44799783 Lac10g2066 Lac-Chr10:29611982 4.90E-44 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lac13g0627 . 1 294 Core Cell Cycle Gene Families AT3G48750 85.4 2.6e-150 528.9
Lac1g1740 . 1 300 Core Cell Cycle Gene Families AT3G48750 56.8 3.7e-96 349.0
Lac2g0052 . 11 307 Core Cell Cycle Gene Families AT3G48750 53.4 1.0e-93 340.9
Lac1g1740 . 1 305 Core Cell Cycle Gene Families AT3G54180 84.8 5.4e-154 541.2
Lac2g0052 . 11 310 Core Cell Cycle Gene Families AT3G54180 65.8 1.1e-117 420.6
Lac13g0627 . 1 290 Core Cell Cycle Gene Families AT3G54180 54.1 5.8e-92 335.1
Lac1g1740 . 1 305 Core Cell Cycle Gene Families AT2G38620 71.8 1.4e-123 439.9
Lac2g0052 . 11 310 Core Cell Cycle Gene Families AT2G38620 58.0 3.8e-94 342.0
Lac2g0052 . 1 307 Core Cell Cycle Gene Families AT1G76540 84.0 3.8e-155 545.0
Lac1g1740 . 1 300 Core Cell Cycle Gene Families AT1G76540 66.3 1.1e-117 420.6
Lac13g0627 . 1 290 Core Cell Cycle Gene Families AT1G76540 53.0 4.5e-92 335.5
Lac2g0052 . 8 307 Core Cell Cycle Gene Families AT1G20930 87.3 8.1e-158 553.9
Lac1g1740 . 1 303 Core Cell Cycle Gene Families AT1G20930 66.8 1.1e-119 427.2
Lac13g0627 . 1 290 Core Cell Cycle Gene Families AT1G20930 55.0 2.6e-95 346.3
Lac9g2934 . 40 555 Core Cell Cycle Gene Families AT5G10270 72.8 1.0e-215 746.9
Lac7g0838 . 101 417 Core Cell Cycle Gene Families AT5G10270 53.5 8.9e-98 355.1
Lac5g2461 . 120 436 Core Cell Cycle Gene Families AT5G10270 55.0 1.5e-97 354.4
Lac3g2293 . 113 431 Core Cell Cycle Gene Families AT5G10270 51.3 4.4e-97 352.8
Lac10g0606 . 93 409 Core Cell Cycle Gene Families AT5G10270 53.5 2.9e-96 350.1
Lac6g2719 . 101 419 Core Cell Cycle Gene Families AT5G10270 51.6 4.9e-96 349.4
Lac2g3025 . 139 455 Core Cell Cycle Gene Families AT5G10270 53.0 1.4e-95 347.8
Lac9g2169 . 142 458 Core Cell Cycle Gene Families AT5G10270 52.9 2.4e-95 347.1
Lac9g2168 . 128 454 Core Cell Cycle Gene Families AT5G10270 50.1 2.3e-93 340.5
Lac10g0120 . 121 439 Core Cell Cycle Gene Families AT5G10270 51.0 2.5e-92 337.0
Lac13g2098 . 148 450 Core Cell Cycle Gene Families AT5G10270 51.7 9.8e-89 325.1
Lac9g2934 . 104 554 Core Cell Cycle Gene Families AT5G64960 71.5 1.8e-177 619.8
Lac5g2461 . 174 436 Core Cell Cycle Gene Families AT5G64960 54.7 1.4e-81 301.2
Lac7g0838 . 155 417 Core Cell Cycle Gene Families AT5G64960 52.5 9.0e-81 298.5
Lac9g2169 . 196 458 Core Cell Cycle Gene Families AT5G64960 53.6 1.2e-80 298.1
Lac10g0606 . 147 409 Core Cell Cycle Gene Families AT5G64960 53.2 1.2e-80 298.1
Lac9g2168 . 182 446 Core Cell Cycle Gene Families AT5G64960 52.9 2.6e-80 297.0
Lac3g2293 . 167 431 Core Cell Cycle Gene Families AT5G64960 50.7 2.6e-80 297.0
Lac2g3025 . 193 455 Core Cell Cycle Gene Families AT5G64960 53.6 2.2e-79 293.9
Lac6g2719 . 155 419 Core Cell Cycle Gene Families AT5G64960 50.4 1.4e-78 291.2
Lac10g0120 . 175 439 Core Cell Cycle Gene Families AT5G64960 50.4 1.0e-76 285.0
Lac13g2098 . 202 450 Core Cell Cycle Gene Families AT5G64960 52.4 2.4e-73 273.9
Lac3g0442 . 4 414 Core Cell Cycle Gene Families AT1G73690 74.5 2.3e-173 605.9
Lac3g0442 . 12 342 Core Cell Cycle Gene Families AT1G66750 78.3 1.2e-157 553.5
Lac3g0442 . 8 415 Core Cell Cycle Gene Families AT1G18040 75.7 3.5e-174 608.6
Lac1g0984 . 33 464 Core Cell Cycle Gene Families AT5G63610 77.9 5.2e-193 671.4
Lac6g3006 . 1 481 Core Cell Cycle Gene Families AT4G28980 62.0 4.7e-173 605.1
Lac8g1821 . 5 496 Core Cell Cycle Gene Families AT1G44110 60.2 3.1e-150 529.3
Lac2g0633 . 206 470 Core Cell Cycle Gene Families AT1G44110 57.4 9.3e-86 315.1
Lac4g2834 . 226 528 Core Cell Cycle Gene Families AT1G44110 50.5 8.7e-84 308.5
Lac2g0367 . 91 370 Core Cell Cycle Gene Families AT1G44110 52.5 2.5e-83 307.0
Lac6g0270 . 84 372 Core Cell Cycle Gene Families AT1G44110 50.5 4.2e-78 289.7
Lac6g1238 . 315 576 Core Cell Cycle Gene Families AT1G44110 53.1 6.2e-74 275.8
Lac2g0633 . 206 470 Core Cell Cycle Gene Families AT1G77390 54.3 4.4e-77 286.2
Lac2g0367 . 96 368 Core Cell Cycle Gene Families AT1G77390 51.6 4.2e-75 279.6
Lac2g0633 . 16 467 Core Cell Cycle Gene Families AT5G25380 54.3 4.1e-115 412.5
Lac6g1238 . 147 588 Core Cell Cycle Gene Families AT5G25380 50.8 1.7e-100 364.0
Lac4g2834 . 224 528 Core Cell Cycle Gene Families AT5G25380 59.3 1.9e-96 350.5
Lac8g1821 . 216 489 Core Cell Cycle Gene Families AT5G25380 53.5 8.1e-79 292.0
Lac2g0367 . 96 363 Core Cell Cycle Gene Families AT5G25380 52.6 1.4e-75 281.2
Lac2g0633 . 3 422 Core Cell Cycle Gene Families AT5G11300 50.8 1.3e-94 344.4
Lac6g1238 . 190 526 Core Cell Cycle Gene Families AT5G11300 52.3 1.7e-78 290.8
Lac8g1821 . 216 435 Core Cell Cycle Gene Families AT5G11300 55.5 3.0e-67 253.4
Lac2g0367 . 91 307 Core Cell Cycle Gene Families AT5G11300 55.8 3.8e-62 236.5
Lac6g0270 . 91 309 Core Cell Cycle Gene Families AT5G11300 53.0 2.7e-60 230.3
Lac4g2834 . 158 528 Core Cell Cycle Gene Families AT1G15570 57.6 2.4e-115 413.3
Lac2g0367 . 65 360 Core Cell Cycle Gene Families AT1G15570 50.3 3.3e-80 296.6
Lac8g1821 . 217 493 Core Cell Cycle Gene Families AT1G15570 53.2 7.0e-78 288.9
Lac2g0633 . 17 467 Core Cell Cycle Gene Families AT1G80370 50.1 6.4e-103 372.1
Lac8g1821 . 217 494 Core Cell Cycle Gene Families AT1G80370 54.1 4.9e-79 292.7
Lac2g0367 . 91 368 Core Cell Cycle Gene Families AT1G80370 52.2 2.1e-77 287.3
Lac6g0270 . 97 369 Core Cell Cycle Gene Families AT1G80370 53.8 1.1e-75 281.6
Lac6g0270 . 3 371 Core Cell Cycle Gene Families AT5G43080 60.0 1.7e-116 416.8
Lac2g0367 . 1 373 Core Cell Cycle Gene Families AT5G43080 57.1 5.2e-113 405.2
Lac8g1821 . 218 496 Core Cell Cycle Gene Families AT5G43080 51.8 1.4e-78 290.8
Lac2g0633 . 208 467 Core Cell Cycle Gene Families AT5G43080 54.6 1.0e-76 284.6
Lac6g0270 . 1 371 Core Cell Cycle Gene Families AT1G47210 60.5 6.3e-125 444.9
Lac2g0367 . 1 373 Core Cell Cycle Gene Families AT1G47210 54.8 5.0e-114 408.7
Lac12g0195 . 177 441 Core Cell Cycle Gene Families AT1G47210 52.3 3.0e-74 276.6
Lac2g0633 . 208 467 Core Cell Cycle Gene Families AT1G47210 52.7 3.9e-74 276.2
Lac2g0367 . 91 371 Core Cell Cycle Gene Families AT1G47220 59.1 4.6e-95 345.5
Lac6g0270 . 91 371 Core Cell Cycle Gene Families AT1G47220 59.8 1.6e-92 337.0
Lac2g0633 . 208 470 Core Cell Cycle Gene Families AT1G47220 50.9 2.3e-70 263.5
Lac6g0270 . 1 371 Core Cell Cycle Gene Families AT1G47230 58.3 1.8e-119 426.8
Lac2g0367 . 1 374 Core Cell Cycle Gene Families AT1G47230 57.9 1.5e-118 423.7
Lac8g1821 . 219 498 Core Cell Cycle Gene Families AT1G47230 51.1 4.1e-76 282.7
Lac12g0195 . 159 441 Core Cell Cycle Gene Families AT1G47230 51.6 2.7e-75 280.0
Lac2g0633 . 209 467 Core Cell Cycle Gene Families AT1G47230 51.5 2.2e-69 260.4
Lac1g1551 . 1 448 Core Cell Cycle Gene Families AT4G37490 55.2 6.8e-115 411.8
Lac1g1551 . 1 345 Core Cell Cycle Gene Families AT5G06150 53.3 6.6e-81 298.5
Lac9g2754 . 113 305 Core Cell Cycle Gene Families AT5G06150 64.9 2.8e-63 240.0
Lac1g3089 . 354 528 Core Cell Cycle Gene Families AT5G06150 52.6 2.4e-43 173.7
Lac1g1551 . 1 405 Core Cell Cycle Gene Families AT3G11520 57.5 9.4e-108 387.9
Lac9g2754 . 25 366 Core Cell Cycle Gene Families AT3G11520 50.3 5.2e-82 302.4
Lac1g3089 . 355 580 Core Cell Cycle Gene Families AT3G11520 52.2 5.1e-61 232.6
Lac9g2754 . 14 404 Core Cell Cycle Gene Families AT2G26760 55.1 6.6e-109 391.7
Lac1g1551 . 92 441 Core Cell Cycle Gene Families AT2G26760 55.2 2.1e-99 360.1
Lac1g3089 . 208 623 Core Cell Cycle Gene Families AT2G17620 61.0 3.1e-128 456.1
Lac2g0092 . 144 544 Core Cell Cycle Gene Families AT2G17620 53.3 3.1e-107 386.3
Lac1g3089 . 213 580 Core Cell Cycle Gene Families AT4G35620 59.6 1.3e-104 377.5
Lac2g0092 . 144 499 Core Cell Cycle Gene Families AT4G35620 53.0 6.3e-88 322.0
Lac9g2754 . 140 366 Core Cell Cycle Gene Families AT4G35620 50.4 1.0e-53 208.4
Lac2g0092 . 108 542 Core Cell Cycle Gene Families AT1G20610 65.1 1.1e-144 510.8
Lac1g3089 . 185 623 Core Cell Cycle Gene Families AT1G20610 56.3 3.4e-122 436.0
Lac2g0092 . 108 439 Core Cell Cycle Gene Families AT1G76310 64.0 9.5e-104 374.4
Lac1g3089 . 185 520 Core Cell Cycle Gene Families AT1G76310 52.0 1.8e-78 290.4
Lac9g2754 . 138 306 Core Cell Cycle Gene Families AT1G76310 52.6 8.8e-41 165.2
Lac1g1551 . 176 341 Core Cell Cycle Gene Families AT1G76310 51.8 9.7e-40 161.8
Lac6g0031 . 1 331 Core Cell Cycle Gene Families AT1G70210 63.6 2.0e-109 393.3
Lac13g0233 . 1 328 Core Cell Cycle Gene Families AT1G70210 63.4 1.7e-105 380.2
Lac1g2790 . 40 333 Core Cell Cycle Gene Families AT2G22490 54.1 2.1e-80 297.0
Lac6g0280 . 43 318 Core Cell Cycle Gene Families AT4G34160 51.2 1.0e-69 261.5
Lac1g2790 . 58 277 Core Cell Cycle Gene Families AT5G65420 59.9 4.7e-69 258.8
Lac6g0985 . 70 269 Core Cell Cycle Gene Families AT5G65420 55.9 3.0e-60 229.6
Lac1g2790 . 53 232 Core Cell Cycle Gene Families AT5G10440 59.1 1.1e-55 214.2
Lac6g0985 . 65 243 Core Cell Cycle Gene Families AT5G10440 53.9 1.8e-50 196.8
Lac1g2523 . 1 299 Core Cell Cycle Gene Families AT5G27620 60.9 2.6e-97 352.8
Lac10g2066 . 1 87 Core Cell Cycle Gene Families AT2G27960 94.3 3.4e-45 177.9
Lac9g2635 . 1 86 Core Cell Cycle Gene Families AT2G27960 91.9 3.2e-43 171.4
Lac10g2066 . 1 83 Core Cell Cycle Gene Families AT2G27970 86.7 4.1e-40 161.0
Lac9g2635 . 1 76 Core Cell Cycle Gene Families AT2G27970 93.4 1.2e-39 159.5
Lac13g0777 . 25 1022 Core Cell Cycle Gene Families AT3G12280 73.9 0.0e+00 1426.8
Lac4g2404 . 14 480 Core Cell Cycle Gene Families AT1G02970 60.5 1.1e-156 550.8