Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac9g2686 ATGAGGGCGTTGCAATTGCAGCTTAGAGTTGACGCCAATCTTCTAAATCCATATTGTCATTTCTGCCCTGCTTCATCTCTAAATCCATCGCTATTGCTTGTTTTTCAACCAATAAAATTCCCCCATCTCCAGAAGTTCAAGCCTTCTCGAAGTTCCCGTCGAACCCATTTTTGTACTCCAACATCTTTCATCGTAGCTTCCATGGCCGATTCCTCTCTTTCCACAAGCTCAGAGACGGAGACGAAACCTTTCTCTGTGCTCTTTGTGTGCTTGGGCAACATTTGCAGAAGCCCAGCTGCTGAAGGAGTATTCAGGGACCTTGTGAGGAAGAAGGGTCTCGATTCCAAATTCATGATCGATTCTGCTGGCACCATTGGTTACCATGAGGGTAATGAGGCCGACCCAAGAATGAGAGCAGCCTCTAAACGACGCGGGATAGCGATTACATCCTTATCGAGGCCAATCCAGCCATCTGATTTTGTAAATTTTGATCTTATTCTTGCCATGGACAAGCAAAACAGAGAGGATATTTTAAGGGCTTTTGAACGGTGGAGAATCAGGGATACCCTTCCTCCTGATTCACATAAGAAGGTCAAATTAATGTGCTCGTATTGTAGAAAGCATGACGAAACAGAAGTACCGGATCCTTATTACGGTGGGCAACAAGGTTTTGAGAAGGTTCTGGACTTGCTTGAAGATGCCTGTGAATCACTGTTGGAAAGCATCTTAGCAGAGAACAAACACATTTCAGATTAA 756 44.44 MRALQLQLRVDANLLNPYCHFCPASSLNPSLLLVFQPIKFPHLQKFKPSRSSRRTHFCTPTSFIVASMADSSLSTSSETETKPFSVLFVCLGNICRSPAAEGVFRDLVRKKGLDSKFMIDSAGTIGYHEGNEADPRMRAASKRRGIAITSLSRPIQPSDFVNFDLILAMDKQNREDILRAFERWRIRDTLPPDSHKKVKLMCSYCRKHDETEVPDPYYGGQQGFEKVLDLLEDACESLLESILAENKHISD 251
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 45163915 45165721 - Lag0010173.1 Lac9g2686 621612

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lac9g2686 251 SMART LMWPc_2 84 241 IPR023485 -
Lac9g2686 251 Pfam Low molecular weight phosphotyrosine protein phosphatase 86 239 IPR023485 -
Lac9g2686 251 FunFam Low molecular weight protein-tyrosine-phosphatase 83 247 - -
Lac9g2686 251 CDD LMWPTP 85 240 - -
Lac9g2686 251 PRINTS LMW phosphotyrosine protein phosphatase signature 86 103 IPR017867 GO:0004725(InterPro)|GO:0006470(InterPro)
Lac9g2686 251 PRINTS LMW phosphotyrosine protein phosphatase signature 129 145 IPR017867 GO:0004725(InterPro)|GO:0006470(InterPro)
Lac9g2686 251 PRINTS LMW phosphotyrosine protein phosphatase signature 213 228 IPR017867 GO:0004725(InterPro)|GO:0006470(InterPro)
Lac9g2686 251 SUPERFAMILY Phosphotyrosine protein phosphatases I 82 242 IPR036196 -
Lac9g2686 251 Gene3D - 67 247 - -
Lac9g2686 251 PANTHER LOW MOLECULAR WEIGHT PHOSPHOTYROSINE PROTEIN PHOSPHATASE-RELATED 66 248 IPR052995 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac9g2686 K25307 - - csv:101207515 428.328
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lac1g2600 . 33 606 Protein tyrosine phosphatase (PTP) family AT3G50110 60.9 7.2e-190 661.4
Lac12g0225 . 6 611 Protein tyrosine phosphatase (PTP) family AT3G50110 55.4 6.8e-180 628.2
Lac8g0876 . 1 406 Protein tyrosine phosphatase (PTP) family AT5G39400 66.8 6.2e-158 554.7
Lac8g2327 . 1 854 Protein tyrosine phosphatase (PTP) family AT3G10550 68.6 0.0e+00 1169.5
Lac8g2327 . 1 854 Protein tyrosine phosphatase (PTP) family AT5G04540 66.2 0.0e+00 1116.3
Lac3g0209 . 1 1257 Protein tyrosine phosphatase (PTP) family AT5G58160 51.7 0.0e+00 1085.5
Lac2g2055 . 84 237 Protein tyrosine phosphatase (PTP) family AT1G71860 56.8 4.2e-43 172.9
Lac3g0027 . 1 760 Protein tyrosine phosphatase (PTP) family AT5G23720 66.4 8.1e-275 944.1
Lac12g2326 . 33 170 Protein tyrosine phosphatase (PTP) family AT3G06110 59.4 9.3e-44 174.1
Lac12g0829 . 1 166 Protein tyrosine phosphatase (PTP) family AT2G04550 78.1 5.1e-72 268.1
Lac13g0651 . 140 324 Protein tyrosine phosphatase (PTP) family AT3G52180 75.7 8.6e-82 301.2
Lac13g1219 . 33 282 Protein tyrosine phosphatase (PTP) family AT3G10940 71.5 4.5e-107 385.2
Lac8g0287 . 29 477 Protein tyrosine phosphatase (PTP) family AT3G01510 73.3 1.6e-204 709.5
Lac9g2220 . 9 212 Protein tyrosine phosphatase (PTP) family AT2G32960 59.8 1.2e-74 277.3
Lac12g0819 . 33 241 Protein tyrosine phosphatase (PTP) family AT2G32960 63.4 6.6e-73 271.6
Lac5g0369 . 1 332 Protein tyrosine phosphatase (PTP) family AT2G35680 54.4 7.7e-98 354.8
Lac6g3049 . 12 263 Protein tyrosine phosphatase (PTP) family AT2G35680 54.7 2.5e-80 296.6
Lac6g3049 . 27 218 Protein tyrosine phosphatase (PTP) family AT5G56610 50.5 1.1e-45 180.6
Lac9g2220 . 18 212 Protein tyrosine phosphatase (PTP) family AT4G03960 70.8 4.4e-77 285.0
Lac12g0819 . 42 241 Protein tyrosine phosphatase (PTP) family AT4G03960 64.5 1.1e-70 263.8
Lac3g1690 . 120 291 Protein tyrosine phosphatase (PTP) family AT4G03960 57.0 1.3e-55 213.8
Lac3g1690 . 115 304 Protein tyrosine phosphatase (PTP) family AT3G02800 70.0 6.3e-79 291.2
Lac9g2220 . 34 206 Protein tyrosine phosphatase (PTP) family AT3G02800 60.1 9.9e-56 214.2
Lac12g0819 . 40 230 Protein tyrosine phosphatase (PTP) family AT3G02800 50.3 5.6e-51 198.4
Lac13g0933 . 1 188 Protein tyrosine phosphatase (PTP) family AT3G55270 65.6 1.4e-62 238.8
Lac8g0876 . 1 406 Protein tyrosine phosphatase (PTP) family AT5G39400 66.8 6.2e-158 554.7
Lac12g0225 . 32 611 Protein tyrosine phosphatase (PTP) family AT3G19420 65.7 5.1e-217 751.5
Lac1g2600 . 31 606 Protein tyrosine phosphatase (PTP) family AT3G19420 62.7 1.6e-202 703.4
Lac1g2600 . 33 606 Protein tyrosine phosphatase (PTP) family AT3G50110 60.9 7.2e-190 661.4
Lac12g0225 . 6 611 Protein tyrosine phosphatase (PTP) family AT3G50110 55.4 6.8e-180 628.2
Lac3g0209 . 1 1257 Protein tyrosine phosphatase (PTP) family AT5G58160 51.7 0.0e+00 1085.5
Lac8g2327 . 1 854 Protein tyrosine phosphatase (PTP) family AT3G10550 68.6 0.0e+00 1169.5
Lac8g2327 . 1 854 Protein tyrosine phosphatase (PTP) family AT5G04540 66.2 0.0e+00 1116.3
Lac9g2686 . 17 246 Protein tyrosine phosphatase (PTP) family AT3G44620 56.3 3.7e-71 265.8
Lac5g0274 . 23 309 Protein tyrosine phosphatase (PTP) family AT2G35320 63.8 3.7e-107 385.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011691 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 0 1 1 1 1 1 1 1 0 2 1 1 30