Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac9g2687 ATGACTACATTAGCCAGTACTTCTGAAATTGTTGAATCAACAGAAGAATTTGATTCTGAGAAAGCTGGGACGAGTTACATGCTAGATGTAGGAAAAAGGTTTTCTATAGAGGATGACATTAATCGTCTGTTTCAGGCAATTGATATCAGATCCTTGCGTAAGAGGTCAGGCCAACAACGTGATGTTGATAAAGATGCTTTGCGAAAGAGTGCAATGAAGAGACCAATTAGAGTAGGTTCATCTCACATGGCAGGGATTGGAATTTCTGAACCAGCAAGTTTAAAGCAGGCTTTGAGGGGCTTATGCATATCTCAGGCTGCAGAAATGGCTGCTACAAAGAGGCTAACAAGGTCTATAGGTTCACCCAGAATCTCTGAAGCAGGAACTATCAAAAGATTGTATAGGGCTGTGGTGGTTGAGGCCAATGGATCTGGTGTGCCTGTAAATGAAAGCAAAGCAAATTTAGTAGAAATTTCCATTGTTTCGGAAAGAATTATGTCCACTTTTCAAAATAAGATGCCTGAATTGTTGCATAAAACTGAGGCAGATATATCAAACCAAGGAGCTGAGTCTTCTTCTCTTAAGGACACGGGGGTATCAGAAGAGGCAAATGTGGATAGGTTGGTGTCAAAGGATCTAGTAGTTAATACGGCCACTGAAGTGACAATAAAGTCACCTGATGAGGTGGGAAAATTTAAATCTCCTTCCTTTACTCCTTCTGGTGAGAAGGATCTCGCTATGAGCAGCATGGCTAATTCCTTAGATTTGACAAAAAATTCAGTGCCAGAGAAGGAGGAGAGAAGTACAACGCGTTGTTTATCTTCTCTATCAAGCTCTGGATCTGTTGTTAGGCCAAACAAATCAGCTTTCAATAATACACGTTTCATCAAACCTATTTTCAGGACCAAGAATTTTGTGAAGAAGAAAGCAAAACTTGAACCAAATTCCTCCCCTAGCACGCTTGATACGTGCTCAGTAATTGTTGATACTGATTTGGGTTCCATAGCAGAAAAATCTGAGAACCAGATGCCAGAAAATGCACAGCATCATGAGAGTAAAGAAGAAGAGAAAGGGTCTTCTGTCTCTAGTAGCACAACTTTAGGTATTGAAGTAAGTGCAAGTGTAGCAACCACAGAGTCTAGTAGGCCTGGTACATCTCTCACCTGCTGTAACAGGAACAGACCAACTATTATGCCATCCGATGAGAGATCCAGATCGAGAGAGAAAGGGATGTTCTCTCAGAGCTCTAAAAGTAGTATTGGTGAATGTAGCAGTAGCCCAAGCATCAGTGGGGAAAGCATTCTCAGTGGATCAAGTCGTAGTGGAGTTAGGCCTCACATGTCAAAGGACTTGAAATGGGAAGCTATCCACCACATTCAGGATCAACATAAATGCCTAGGTCTGAGAAACTTCAAGCTGCTAAGGAGACTTGGTCTTGGGGACATTGGGACTGTGTATCTCTCTGAGCTATGCGATTCAAGCTGTCTATTCGCTATTAAAGTGATGGACAAGGAGTTCTTGGCAAGCAGAAAAAAAATACTTCGGGCACAAACTGAGAGAGAGATACTGCAAATGCTCGACCATCCATTTCTCCCTACATTATATGCTCATTTTGAGACGGATAAGCACTCATGCTTGGTTATGGACTACTGTCCAGGTGGAGATCTCCATGTGCTGCGACAGAAGCAACCATGCAAGAGTTTCTCTGAGCATGCAGTCAGGTTCTATGTTGCCGAAGTTCTTCTTGCCCTGGAATACTTACACATGCTGGGAGTTGTTTACCGAGACCTGAAACCCGAAAATGTTCTGGTCCGAGAAGATGGGCACATAATGCTCACAGATTTTGATTTGTCCCTTAGATGTGCTGTTAATCCTACGCTGCTTCAATCATCATCTCCCGTTGTGGAATCCACTAAGAGGACGTTGAATCCCTGTGATGAATCTAGTTGCATTGACCCTTTCTGCCTCCATCCATCATGGCAGGTCTCATGCTTCACTCCCAAAGTTTTATCTTCTCCATACAAATCTCGAAGAACGAAAACAGATCATCAGGCTAGTCTATTACCGCAGCTTATAGTTGAACCAACTGGTGCGCGTTCCAATTCATTTGTAGGTACCCACGAATACCTTGCCCCTGAGATTGTCAAGGGTGATGGCCATGGGAGTGCTGTCGATTGGTGGACTTACGGGATTTTTCTGTTTGAGCTACTATATGGTAAGACTCCCTTCAAAGGTTCAGGAAACGAGGACACATTAGCAAACATAGTATCCCAAACTCTCAAGTTCCCCGATAGCCCCATAGTTAGTTTTCATGCCAGAGATCTGATCAGATGTCTGCTGGCAAAGGAGCCCGAAAACCGATTAGGCTCAACAAAAGGGGCTATCGAGATTAAGCAGCACCTGTTTTTTGAAGGCCTCAATTGGGCTCTAATACGTTGTGCAGTTCCACCTGAGCTTCCCAAGTTTTTCGATGGTGGAACTGGTGCAATGCCAATGGATTCTGGGGAGAACACGAAGCGTAGAGATCTCGAAAATCTGGAAGCGGATGCACCAATCTTTGACCTATTTTAG 2571 43.45 MTTLASTSEIVESTEEFDSEKAGTSYMLDVGKRFSIEDDINRLFQAIDIRSLRKRSGQQRDVDKDALRKSAMKRPIRVGSSHMAGIGISEPASLKQALRGLCISQAAEMAATKRLTRSIGSPRISEAGTIKRLYRAVVVEANGSGVPVNESKANLVEISIVSERIMSTFQNKMPELLHKTEADISNQGAESSSLKDTGVSEEANVDRLVSKDLVVNTATEVTIKSPDEVGKFKSPSFTPSGEKDLAMSSMANSLDLTKNSVPEKEERSTTRCLSSLSSSGSVVRPNKSAFNNTRFIKPIFRTKNFVKKKAKLEPNSSPSTLDTCSVIVDTDLGSIAEKSENQMPENAQHHESKEEEKGSSVSSSTTLGIEVSASVATTESSRPGTSLTCCNRNRPTIMPSDERSRSREKGMFSQSSKSSIGECSSSPSISGESILSGSSRSGVRPHMSKDLKWEAIHHIQDQHKCLGLRNFKLLRRLGLGDIGTVYLSELCDSSCLFAIKVMDKEFLASRKKILRAQTEREILQMLDHPFLPTLYAHFETDKHSCLVMDYCPGGDLHVLRQKQPCKSFSEHAVRFYVAEVLLALEYLHMLGVVYRDLKPENVLVREDGHIMLTDFDLSLRCAVNPTLLQSSSPVVESTKRTLNPCDESSCIDPFCLHPSWQVSCFTPKVLSSPYKSRRTKTDHQASLLPQLIVEPTGARSNSFVGTHEYLAPEIVKGDGHGSAVDWWTYGIFLFELLYGKTPFKGSGNEDTLANIVSQTLKFPDSPIVSFHARDLIRCLLAKEPENRLGSTKGAIEIKQHLFFEGLNWALIRCAVPPELPKFFDGGTGAMPMDSGENTKRRDLENLEADAPIFDLF 856
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 45166135 45169159 - Lag0010174.1 Lac9g2687 621613
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac9g2687 856 SMART serkin_6 471 803 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac9g2687 856 FunFam serine/threonine-protein kinase D6PK-like 555 622 - -
Lac9g2687 856 SUPERFAMILY Protein kinase-like (PK-like) 445 821 IPR011009 -
Lac9g2687 856 Gene3D Transferase(Phosphotransferase) domain 1 551 619 - -
Lac9g2687 856 Gene3D Phosphorylase Kinase; domain 1 469 550 - -
Lac9g2687 856 Pfam Protein kinase domain 472 621 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac9g2687 856 Pfam Protein kinase domain 700 803 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac9g2687 856 MobiDBLite consensus disorder prediction 411 443 - -
Lac9g2687 856 MobiDBLite consensus disorder prediction 343 358 - -
Lac9g2687 856 FunFam serine/threonine-protein kinase D6PK-like 698 821 - -
Lac9g2687 856 MobiDBLite consensus disorder prediction 256 284 - -
Lac9g2687 856 ProSiteProfiles Protein kinase domain profile. 471 803 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac9g2687 856 ProSitePatterns Serine/Threonine protein kinases active-site signature. 592 604 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac9g2687 856 Gene3D Transferase(Phosphotransferase) domain 1 698 817 - -
Lac9g2687 856 FunFam Serine/threonine-protein kinase D6PK-like 469 554 - -
Lac9g2687 856 CDD STKc_phototropin_like 471 821 - -
Lac9g2687 856 MobiDBLite consensus disorder prediction 359 397 - -
Lac9g2687 856 MobiDBLite consensus disorder prediction 339 443 - -
Lac9g2687 856 PANTHER FLIPPASE KINASE 1-RELATED 338 824 - GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac1g3129 Lac-Chr1:51633641 Lac9g2687 Lac-Chr9:45166135 8.70E-148 dispersed
Lac3g3044 Lac-Chr3:48700894 Lac9g2687 Lac-Chr9:45166135 1.20E-15 dispersed
Lac8g0213 Lac-Chr8:2395477 Lac9g2687 Lac-Chr9:45166135 2.70E-142 dispersed
Lac9g1924 Lac-Chr9:39021580 Lac9g2687 Lac-Chr9:45166135 9.20E-93 dispersed
Lac9g2534 Lac-Chr9:43988050 Lac9g2687 Lac-Chr9:45166135 1.30E-95 dispersed
Lac9g2687 Lac-Chr9:45166135 Lac9g2843 Lac-Chr9:46427422 1.70E-64 dispersed
Lac9g2687 Lac-Chr9:45166135 Lac9g2689 Lac-Chr9:45179762 3.20E-31 proximal
Lac9g2687 Lac-Chr9:45166135 Lac9g2690 Lac-Chr9:45182631 2.80E-75 proximal
Lac4g1946 Lac-Chr4:38951202 Lac9g2687 Lac-Chr9:45166135 2.80E-57 transposed
Lac1g2249 Lac-Chr1:43934847 Lac9g2687 Lac-Chr9:45166135 4.00E-199 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86471 PF00069 Pkinase 2.60E-36 CL0016 Lac PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac9g2687 - - - 0.0