Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac9g2690 ATGGCGAGAGGCGAGGCGACCTGGGGTCATTGCGCCCTAAAGGCAACCAAGGCGAACTCCTTCAACCAGGCGTTCGCCCGGCAGCGCCTTTGGTCGCATTTCTACGCCTTTTCCATTTGTGGAGGCGACGCCTGGTTGCGCCTGGCTTCACTCGGGCGACGTCTTTTTGTCGCCTCTCGCCTTGAGGCAATCATGAAACTTATCGCCTCAAGATTCTATGCATCGGAGATAGTGGTTGCTATCGAGTATCTTCACATGATGGGGATCGTTTACCGTGATCTGAAGCCGGAAAATGTGCTGGTACGATCGGACGGCCATATCATGCTCACTGATTTCGATCTCTCCTTGAAGTGTGAAGATTCAACGTCGACCCCACAGGTTATCACTACTAAAAATCCGACAAATGGCACCGCCCCGCCAAAGGACTATCAAATTGATGTCCCTCCTTTCACATCATCCTCTTGCATACTTCCAAACTGCATAGTCCCAGCCGTGTCATGTTTCAACCCGAAACGCAAGCGCAAGAAGAAGTCTGGCCACCGGAATGGACCCGAGTTTGTCGCTGAACCGGTCGACGTTCGGTCAATGTCGTTTGTAGGCACTCACGAATACTTGGCGCCGGAGATTGTCTCCGGTGAGGGCCATGGAAGTGCAGTGGACTGGTGGACACTCGGGGTGTTTGTGTTTGAGTTGTTTTATGGAGTGACACCCTTTAGAGGCATGGACAATGAGCTCACCTTGGCCAACATAGTGGCCAGAGCTCTTGAGTTCCCTAAAGAACCGGCGGTCCCAGCAGCGGCGAAAGACCTTATCTCACAGTTACTGGTCAAAGATCCTGCCAGGCGGTTGGGGTCAACGACAGGGTCGTCTGCGATCAAGCACCATTCATTTTTCCAAGGGGTAAATTGGGCATTATTGAGATGTACGTCGCCACCATTTATTCCTCCACCTTTTAGTAAAGAAGTTGCATCAGAAAGCTGCCCAGAGGCCCCAGTGGATTATTATTAG 1008 51.88 MARGEATWGHCALKATKANSFNQAFARQRLWSHFYAFSICGGDAWLRLASLGRRLFVASRLEAIMKLIASRFYASEIVVAIEYLHMMGIVYRDLKPENVLVRSDGHIMLTDFDLSLKCEDSTSTPQVITTKNPTNGTAPPKDYQIDVPPFTSSSCILPNCIVPAVSCFNPKRKRKKKSGHRNGPEFVAEPVDVRSMSFVGTHEYLAPEIVSGEGHGSAVDWWTLGVFVFELFYGVTPFRGMDNELTLANIVARALEFPKEPAVPAAAKDLISQLLVKDPARRLGSTTGSSAIKHHSFFQGVNWALLRCTSPPFIPPPFSKEVASESCPEAPVDYY 335
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 45182631 45184281 + Lag0010177.1 Lac9g2690 621616
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac9g2690 335 Gene3D Transferase(Phosphotransferase) domain 1 194 316 - -
Lac9g2690 335 PANTHER FLIPPASE KINASE 1-RELATED 64 317 - GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER)
Lac9g2690 335 ProSiteProfiles Protein kinase domain profile. 1 298 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac9g2690 335 SMART serkin_6 1 298 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac9g2690 335 Pfam Protein kinase domain 64 131 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac9g2690 335 Pfam Protein kinase domain 195 298 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac9g2690 335 FunFam Serine/threonine-protein kinase OXI1 56 120 - -
Lac9g2690 335 ProSitePatterns Serine/Threonine protein kinases active-site signature. 89 101 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac9g2690 335 Gene3D Transferase(Phosphotransferase) domain 1 63 130 - -
Lac9g2690 335 FunFam serine/threonine-protein kinase D6PK-like 193 316 - -
Lac9g2690 335 SUPERFAMILY Protein kinase-like (PK-like) 64 327 IPR011009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac9g2690 Lac-Chr9:45182631 Lac9g2843 Lac-Chr9:46427422 1.80E-46 dispersed
Lac9g2687 Lac-Chr9:45166135 Lac9g2690 Lac-Chr9:45182631 2.80E-75 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86473 PF00069 Pkinase 3.30E-19 CL0016 Lac PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac9g2690 K08286 - csv:101207262 518.85