Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lac9g2703 | ATGGCAAGCCACAGAGTTGAAGAAACTGGTCCTTCAAGCCATCATCTTCAATATAATTCACTTCTTTATGGAATCAACAGCAACAACAATAATCCTTCCTCCACTTTGATCAATAACGATGGCCAAGCTTTTGATTTTGGAGAATTGGAACAAGCAATCGTGTTACAAGGACATGGAGTCAAGAATAAACACGATCATCCCGAACCCAAACAAAGCTTTTTCTCAGGCAGGCCTGCAGCAACTCTGGAAATGTTCCCTTCTTGGCCAATCAAATTCCAACAAACTCCAAGAGGAATTGGTTTGAGAGGAAGAGAAGAGAGCACAGATGAGTCAGGATCAGCTGTGAACACTCATACAATTAGGAAATCTGATGATGATGATGATCAATTGGAATTGGAATTGGAATTACCAGAATCTCCAATGAGTAAAAAGCCAAGTTCTTCTTCTTCTTCAGGCCATCAGGGCTTTATTATTCAGAAGCATCTTGTGCACCAGATTCAACCTGAAATGATGCTCACTGATGTTTCAACAACTGCACTTTCACCACAACATCAGTCCCCTCAACAAAAGAGAAAAGGATGTGGATCCATTTCAACATCACAGAAACAACTTGACGCTAAGACATTGAGACGTTTGGCTCAGAACAGAGAGGCTGCGAGGAAGAGTCGACTAAGGAAAAAGGCTTACGTGCAGCAACTTGAGAGCAGTAGAATCAAGCTTACGCAGCTTGAACAAGACATTCAACGAACACGATCCCAGGGTTTGTTTCTGGGTGCTGGCGGCAGCATTGTCAGCTCCGGAGCTGCAATGTTTGATATGGAATATGCAAGGTGGTTGGAAGAGGACCACCGGCACACGGCGGAGCTGCGTGGGGGATTGGAGGCGCGTCTACCGGACGGAGAGCTGAGAGTGATGGTAGACGCCTGCGTTTGCCATTACGACCAAATTTTCCGGCTGAAAGGAGAGGCTGCCAAGTCCGACGTCTTCCATCTCATCACCGGAATTTGGATGTCTCCGGCGGAGCGTTGCTTCCTCTGGATGGGCGGATTCCGGCCCTCCGATGTAATTAAGATGTTAATGTCGCAATTAGACCCGATAACAGAACAACAAGTGATGGAAATTTACAAGCTACAGCATTCCTCACAGCAGGCTGAAGATGCTTTATCCCAAGGCCTCGATCAGCTCCACCAGTCTCTGACGGAGACCGTCGCCGGCGGTCCGGTCATCGACGGCATCAACCACATGGTCTTGGCCATGGATAAGCTCTCCAATCTCCAAGGCTTTGTTCATCAGGCAGACATTCTGAGACAACAAACACTTCACCAACTGCATAGGATACTCACTGTCCGGCAAGCAGCCAAATGTTTTTTGGTCATTGGTGAATATTACAGTAGATTACGAGCCCTAAGTTCCCTATGGTCCTCTCGTCCAAACGAGTAA | 1440 | 46.81 | MASHRVEETGPSSHHLQYNSLLYGINSNNNNPSSTLINNDGQAFDFGELEQAIVLQGHGVKNKHDHPEPKQSFFSGRPAATLEMFPSWPIKFQQTPRGIGLRGREESTDESGSAVNTHTIRKSDDDDDQLELELELPESPMSKKPSSSSSSGHQGFIIQKHLVHQIQPEMMLTDVSTTALSPQHQSPQQKRKGCGSISTSQKQLDAKTLRRLAQNREAARKSRLRKKAYVQQLESSRIKLTQLEQDIQRTRSQGLFLGAGGSIVSSGAAMFDMEYARWLEEDHRHTAELRGGLEARLPDGELRVMVDACVCHYDQIFRLKGEAAKSDVFHLITGIWMSPAERCFLWMGGFRPSDVIKMLMSQLDPITEQQVMEIYKLQHSSQQAEDALSQGLDQLHQSLTETVAGGPVIDGINHMVLAMDKLSNLQGFVHQADILRQQTLHQLHRILTVRQAAKCFLVIGEYYSRLRALSSLWSSRPNE | 479 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
9 | 45307956 | 45314014 | + | Lag0010190.1 | Lac9g2703 | 621629 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lac9g2703 | 479 | ProSiteProfiles | Basic-leucine zipper (bZIP) domain profile. | 205 | 249 | IPR004827 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lac9g2703 | 479 | MobiDBLite | consensus disorder prediction | 177 | 206 | - | - | |
Lac9g2703 | 479 | Pfam | Seed dormancy control | 286 | 361 | IPR025422 | GO:0006351(InterPro)|GO:0043565(InterPro) | |
Lac9g2703 | 479 | Coils | Coil | 226 | 253 | - | - | |
Lac9g2703 | 479 | MobiDBLite | consensus disorder prediction | 93 | 128 | - | - | |
Lac9g2703 | 479 | Gene3D | - | 206 | 255 | - | - | |
Lac9g2703 | 479 | SUPERFAMILY | Leucine zipper domain | 207 | 246 | IPR046347 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lac9g2703 | 479 | PANTHER | TRANSCRIPTION FACTOR TGA9 | 154 | 479 | - | - | |
Lac9g2703 | 479 | CDD | bZIP_HBP1b-like | 207 | 258 | - | - | |
Lac9g2703 | 479 | ProSiteProfiles | DOG1 domain profile. | 268 | 476 | IPR025422 | GO:0006351(InterPro)|GO:0043565(InterPro) | |
Lac9g2703 | 479 | Pfam | bZIP transcription factor | 206 | 243 | IPR004827 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lac9g2703 | 479 | ProSitePatterns | Basic-leucine zipper (bZIP) domain signature. | 210 | 225 | IPR004827 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lac9g2703 | 479 | SMART | brlzneu | 203 | 277 | IPR004827 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lac9g2703 | 479 | FunFam | BZIP family transcription factor | 206 | 255 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lac10g1836 | Lac-Chr10:22868341 | Lac9g2703 | Lac-Chr9:45307956 | 2.60E-142 | dispersed | |
Lac6g1047 | Lac-Chr6:9596500 | Lac9g2703 | Lac-Chr9:45307956 | 3.40E-09 | dispersed | |
Lac6g1048 | Lac-Chr6:9606710 | Lac9g2703 | Lac-Chr9:45307956 | 6.00E-12 | dispersed | |
Lac8g1398 | Lac-Chr8:30681784 | Lac9g2703 | Lac-Chr9:45307956 | 2.50E-86 | dispersed | |
Lac8g3028 | Lac-Chr8:47066081 | Lac9g2703 | Lac-Chr9:45307956 | 6.90E-76 | dispersed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
24518 | PF14144 | DOG1 | 1.30E-28 | No_clan | Lac | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lac9g2703 | K14431 | - | csv:101223216 | 615.535 |