Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac9g2703 ATGGCAAGCCACAGAGTTGAAGAAACTGGTCCTTCAAGCCATCATCTTCAATATAATTCACTTCTTTATGGAATCAACAGCAACAACAATAATCCTTCCTCCACTTTGATCAATAACGATGGCCAAGCTTTTGATTTTGGAGAATTGGAACAAGCAATCGTGTTACAAGGACATGGAGTCAAGAATAAACACGATCATCCCGAACCCAAACAAAGCTTTTTCTCAGGCAGGCCTGCAGCAACTCTGGAAATGTTCCCTTCTTGGCCAATCAAATTCCAACAAACTCCAAGAGGAATTGGTTTGAGAGGAAGAGAAGAGAGCACAGATGAGTCAGGATCAGCTGTGAACACTCATACAATTAGGAAATCTGATGATGATGATGATCAATTGGAATTGGAATTGGAATTACCAGAATCTCCAATGAGTAAAAAGCCAAGTTCTTCTTCTTCTTCAGGCCATCAGGGCTTTATTATTCAGAAGCATCTTGTGCACCAGATTCAACCTGAAATGATGCTCACTGATGTTTCAACAACTGCACTTTCACCACAACATCAGTCCCCTCAACAAAAGAGAAAAGGATGTGGATCCATTTCAACATCACAGAAACAACTTGACGCTAAGACATTGAGACGTTTGGCTCAGAACAGAGAGGCTGCGAGGAAGAGTCGACTAAGGAAAAAGGCTTACGTGCAGCAACTTGAGAGCAGTAGAATCAAGCTTACGCAGCTTGAACAAGACATTCAACGAACACGATCCCAGGGTTTGTTTCTGGGTGCTGGCGGCAGCATTGTCAGCTCCGGAGCTGCAATGTTTGATATGGAATATGCAAGGTGGTTGGAAGAGGACCACCGGCACACGGCGGAGCTGCGTGGGGGATTGGAGGCGCGTCTACCGGACGGAGAGCTGAGAGTGATGGTAGACGCCTGCGTTTGCCATTACGACCAAATTTTCCGGCTGAAAGGAGAGGCTGCCAAGTCCGACGTCTTCCATCTCATCACCGGAATTTGGATGTCTCCGGCGGAGCGTTGCTTCCTCTGGATGGGCGGATTCCGGCCCTCCGATGTAATTAAGATGTTAATGTCGCAATTAGACCCGATAACAGAACAACAAGTGATGGAAATTTACAAGCTACAGCATTCCTCACAGCAGGCTGAAGATGCTTTATCCCAAGGCCTCGATCAGCTCCACCAGTCTCTGACGGAGACCGTCGCCGGCGGTCCGGTCATCGACGGCATCAACCACATGGTCTTGGCCATGGATAAGCTCTCCAATCTCCAAGGCTTTGTTCATCAGGCAGACATTCTGAGACAACAAACACTTCACCAACTGCATAGGATACTCACTGTCCGGCAAGCAGCCAAATGTTTTTTGGTCATTGGTGAATATTACAGTAGATTACGAGCCCTAAGTTCCCTATGGTCCTCTCGTCCAAACGAGTAA 1440 46.81 MASHRVEETGPSSHHLQYNSLLYGINSNNNNPSSTLINNDGQAFDFGELEQAIVLQGHGVKNKHDHPEPKQSFFSGRPAATLEMFPSWPIKFQQTPRGIGLRGREESTDESGSAVNTHTIRKSDDDDDQLELELELPESPMSKKPSSSSSSGHQGFIIQKHLVHQIQPEMMLTDVSTTALSPQHQSPQQKRKGCGSISTSQKQLDAKTLRRLAQNREAARKSRLRKKAYVQQLESSRIKLTQLEQDIQRTRSQGLFLGAGGSIVSSGAAMFDMEYARWLEEDHRHTAELRGGLEARLPDGELRVMVDACVCHYDQIFRLKGEAAKSDVFHLITGIWMSPAERCFLWMGGFRPSDVIKMLMSQLDPITEQQVMEIYKLQHSSQQAEDALSQGLDQLHQSLTETVAGGPVIDGINHMVLAMDKLSNLQGFVHQADILRQQTLHQLHRILTVRQAAKCFLVIGEYYSRLRALSSLWSSRPNE 479
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 45307956 45314014 + Lag0010190.1 Lac9g2703 621629
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac9g2703 479 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 205 249 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac9g2703 479 MobiDBLite consensus disorder prediction 177 206 - -
Lac9g2703 479 Pfam Seed dormancy control 286 361 IPR025422 GO:0006351(InterPro)|GO:0043565(InterPro)
Lac9g2703 479 Coils Coil 226 253 - -
Lac9g2703 479 MobiDBLite consensus disorder prediction 93 128 - -
Lac9g2703 479 Gene3D - 206 255 - -
Lac9g2703 479 SUPERFAMILY Leucine zipper domain 207 246 IPR046347 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac9g2703 479 PANTHER TRANSCRIPTION FACTOR TGA9 154 479 - -
Lac9g2703 479 CDD bZIP_HBP1b-like 207 258 - -
Lac9g2703 479 ProSiteProfiles DOG1 domain profile. 268 476 IPR025422 GO:0006351(InterPro)|GO:0043565(InterPro)
Lac9g2703 479 Pfam bZIP transcription factor 206 243 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac9g2703 479 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 210 225 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac9g2703 479 SMART brlzneu 203 277 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac9g2703 479 FunFam BZIP family transcription factor 206 255 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac10g1836 Lac-Chr10:22868341 Lac9g2703 Lac-Chr9:45307956 2.60E-142 dispersed
Lac6g1047 Lac-Chr6:9596500 Lac9g2703 Lac-Chr9:45307956 3.40E-09 dispersed
Lac6g1048 Lac-Chr6:9606710 Lac9g2703 Lac-Chr9:45307956 6.00E-12 dispersed
Lac8g1398 Lac-Chr8:30681784 Lac9g2703 Lac-Chr9:45307956 2.50E-86 dispersed
Lac8g3028 Lac-Chr8:47066081 Lac9g2703 Lac-Chr9:45307956 6.90E-76 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
24518 PF14144 DOG1 1.30E-28 No_clan Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac9g2703 K14431 - csv:101223216 615.535