Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac9g2731 ATGTTCCTAATTTTGTTTGAAATCGTGGATCCTGTCGATCAGCAATTAAAGCGGAAGAGTGAGGTGGCAGATTATGAAGCTGAGTCAACCGATAGAGCAGCTGGTCCTAGATTTACTGAGGTAGTTAACAGTCCCCATCAAACACCTGTATCTGTGAAAGGAGGAAAAGGAAACAAATCAAGGCTAACCAAATGTAGTAGATCGGGGCCACAGACTCCCATGTCAAATGTTGGTTCACCTTCTGCAAACAATCTTACTCCAGCTGGTCCATGCCGTTATGATAGTTCTCTTGGTCTCTTGACAAAGAAGTTCATTAACCTGATCAAACAGGCGGAAGATGGTATTCTTGATCTAAATAAAGCAGCTGACACGTTAGAGGTACAAAAAAGACGGATATATGATATAACAAATGTCCTTGAAGGAATTGGTCTCATAGAAAAGAAGCTTAAGAACAGAATTCAGTGGAAGGGGCTTGATGTCTCAAGATCAGGTGATGTGGATGACAATTATGCTGGTCTACAGGCAGAAGTAGAGAACCTTTCCATGGAGGAGCGTGGATTAGATGAACAAATAAGAGAGATGCAGGAAAGATTAAGGGACCTCAGTGAAGATGAGAACAACCAAAGGTGGCTTTTTGTAACCGAGGAAGACATCAAGGGTTTGCCCTGTTTCCAGAATGAAACTCTCATAGCCATTAAAGCTCCCCATGGAACCACTTTAGAAGTTCCAGATCCTGATGAGGTTGTTGACTACCCCCAAAGGAGGTACAGGATAGTCCTCAGAAGCACCATGGGTCCCATTGATGTTTACCTTGTCAGTCAGTTTGAAGAGAAGTTTGAGGAGATCAATGGTGTGGAAGTGCCCCCAAGCTTGCCGTCAACTTCAGGGTTTAATGAAACACCTGCTACAACAGTAGGAACAGACGATACCAGGGGAAAGGAAATTGAAACACGGGAGCAAGATGTACACAGAATGTGCTCCGATCTAAATGCTTCACAGGACTTCGTGGGTGGAATTATGAAAATTGTTCCCTCGGTTGTAGATAGCGATGCTGATTACTGGCTCTTGTCTGACGCTGATGTCAGTATCACTGACATGTGGAGAACTGAACCTGGTGTTGAGTGGAATGAATTGGGTACATTTCATGAAGATTACAGTATTGATAATGTCAGCACACCCCAAACCCAGAATCCACTTCCTAATAATGCACCTGATATGCCTTCTGCTAATCCTTCTAGCAGCTGA 1245 43.53 MFLILFEIVDPVDQQLKRKSEVADYEAESTDRAAGPRFTEVVNSPHQTPVSVKGGKGNKSRLTKCSRSGPQTPMSNVGSPSANNLTPAGPCRYDSSLGLLTKKFINLIKQAEDGILDLNKAADTLEVQKRRIYDITNVLEGIGLIEKKLKNRIQWKGLDVSRSGDVDDNYAGLQAEVENLSMEERGLDEQIREMQERLRDLSEDENNQRWLFVTEEDIKGLPCFQNETLIAIKAPHGTTLEVPDPDEVVDYPQRRYRIVLRSTMGPIDVYLVSQFEEKFEEINGVEVPPSLPSTSGFNETPATTVGTDDTRGKEIETREQDVHRMCSDLNASQDFVGGIMKIVPSVVDSDADYWLLSDADVSITDMWRTEPGVEWNELGTFHEDYSIDNVSTPQTQNPLPNNAPDMPSANPSSS 414
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 45486837 45490106 - Lag0010218.1 Lac9g2731 621657

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lac9g2731 414 Gene3D - 164 274 - -
Lac9g2731 414 PANTHER TRANSCRIPTION FACTOR E2F 34 369 IPR015633 GO:0000978(InterPro)|GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)|GO:0006357(InterPro)|GO:0090575(PANTHER)
Lac9g2731 414 SUPERFAMILY E2F-DP heterodimerization region 169 274 IPR037241 -
Lac9g2731 414 Gene3D - 86 159 IPR036388 -
Lac9g2731 414 Coils Coil 170 207 - -
Lac9g2731 414 MobiDBLite consensus disorder prediction 42 87 - -
Lac9g2731 414 SMART E2F_TDP_2 92 157 IPR003316 GO:0005667(InterPro)|GO:0006355(InterPro)
Lac9g2731 414 Pfam E2F transcription factor CC-MB domain 173 273 IPR032198 GO:0046983(InterPro)
Lac9g2731 414 MobiDBLite consensus disorder prediction 288 307 - -
Lac9g2731 414 MobiDBLite consensus disorder prediction 388 414 - -
Lac9g2731 414 MobiDBLite consensus disorder prediction 286 311 - -
Lac9g2731 414 SUPERFAMILY Winged helix DNA-binding domain 92 155 IPR036390 -
Lac9g2731 414 Coils Coil 108 128 - -
Lac9g2731 414 MobiDBLite consensus disorder prediction 61 87 - -
Lac9g2731 414 Pfam E2F/DP family winged-helix DNA-binding domain 94 157 IPR003316 GO:0005667(InterPro)|GO:0006355(InterPro)
Lac9g2731 414 FunFam E2F transcription factor 1 86 159 - -
Lac9g2731 414 CDD E2F_DD 168 274 IPR032198 GO:0046983(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac9g2731 K06620 - - csv:101219318 758.829
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac3g0665 Lac-Chr3:5177653 Lac9g2731 Lac-Chr9:45486837 3.00E-10 dispersed
Lac6g0492 Lac-Chr6:4115161 Lac9g2731 Lac-Chr9:45486837 7.80E-60 transposed
Lac1g2307 Lac-Chr1:44479315 Lac9g2731 Lac-Chr9:45486837 2.90E-119 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lac10g0417 . 3 369 E2F-DP Transcription Factor Family AT3G48160 56.1 3.0e-104 376.3
Lac5g2716 . 81 284 E2F-DP Transcription Factor Family AT5G02470 55.1 1.6e-59 227.3
Lac1g2307 . 11 449 E2F-DP Transcription Factor Family AT2G36010 55.7 2.5e-121 433.3
Lac9g2731 . 17 393 E2F-DP Transcription Factor Family AT2G36010 58.1 2.0e-110 397.1
Lac9g2731 . 12 398 E2F-DP Transcription Factor Family AT5G22220 58.2 1.6e-106 384.0
Lac6g0492 . 151 405 E2F-DP Transcription Factor Family AT1G47870 55.3 2.6e-68 256.9
Lac9g2731 . 91 367 E2F-DP Transcription Factor Family AT1G47870 51.3 5.6e-63 239.2
Lac5g2716 . 81 284 E2F-DP Transcription Factor Family AT5G02470 55.1 1.6e-59 227.3
Lac9g2731 . 12 398 E2F-DP Transcription Factor Family AT5G22220 58.2 1.6e-106 384.0
Lac1g2307 . 11 449 E2F-DP Transcription Factor Family AT2G36010 55.7 2.5e-121 433.3
Lac9g2731 . 17 393 E2F-DP Transcription Factor Family AT2G36010 58.1 2.0e-110 397.1
Lac6g0492 . 151 405 E2F-DP Transcription Factor Family AT1G47870 55.3 2.6e-68 256.9
Lac9g2731 . 91 367 E2F-DP Transcription Factor Family AT1G47870 51.3 5.6e-63 239.2
Lac10g0417 . 3 369 E2F-DP Transcription Factor Family AT3G48160 56.1 3.0e-104 376.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004238 2 3 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 2 3 1 1 1 1 1 1 1 1 1 2 2 43
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
24523 PF16421 E2F_CC-MB 2.40E-35 No_clan Lac TF