Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac9g2731 ATGTTCCTAATTTTGTTTGAAATCGTGGATCCTGTCGATCAGCAATTAAAGCGGAAGAGTGAGGTGGCAGATTATGAAGCTGAGTCAACCGATAGAGCAGCTGGTCCTAGATTTACTGAGGTAGTTAACAGTCCCCATCAAACACCTGTATCTGTGAAAGGAGGAAAAGGAAACAAATCAAGGCTAACCAAATGTAGTAGATCGGGGCCACAGACTCCCATGTCAAATGTTGGTTCACCTTCTGCAAACAATCTTACTCCAGCTGGTCCATGCCGTTATGATAGTTCTCTTGGTCTCTTGACAAAGAAGTTCATTAACCTGATCAAACAGGCGGAAGATGGTATTCTTGATCTAAATAAAGCAGCTGACACGTTAGAGGTACAAAAAAGACGGATATATGATATAACAAATGTCCTTGAAGGAATTGGTCTCATAGAAAAGAAGCTTAAGAACAGAATTCAGTGGAAGGGGCTTGATGTCTCAAGATCAGGTGATGTGGATGACAATTATGCTGGTCTACAGGCAGAAGTAGAGAACCTTTCCATGGAGGAGCGTGGATTAGATGAACAAATAAGAGAGATGCAGGAAAGATTAAGGGACCTCAGTGAAGATGAGAACAACCAAAGGTGGCTTTTTGTAACCGAGGAAGACATCAAGGGTTTGCCCTGTTTCCAGAATGAAACTCTCATAGCCATTAAAGCTCCCCATGGAACCACTTTAGAAGTTCCAGATCCTGATGAGGTTGTTGACTACCCCCAAAGGAGGTACAGGATAGTCCTCAGAAGCACCATGGGTCCCATTGATGTTTACCTTGTCAGTCAGTTTGAAGAGAAGTTTGAGGAGATCAATGGTGTGGAAGTGCCCCCAAGCTTGCCGTCAACTTCAGGGTTTAATGAAACACCTGCTACAACAGTAGGAACAGACGATACCAGGGGAAAGGAAATTGAAACACGGGAGCAAGATGTACACAGAATGTGCTCCGATCTAAATGCTTCACAGGACTTCGTGGGTGGAATTATGAAAATTGTTCCCTCGGTTGTAGATAGCGATGCTGATTACTGGCTCTTGTCTGACGCTGATGTCAGTATCACTGACATGTGGAGAACTGAACCTGGTGTTGAGTGGAATGAATTGGGTACATTTCATGAAGATTACAGTATTGATAATGTCAGCACACCCCAAACCCAGAATCCACTTCCTAATAATGCACCTGATATGCCTTCTGCTAATCCTTCTAGCAGCTGA 1245 43.53 MFLILFEIVDPVDQQLKRKSEVADYEAESTDRAAGPRFTEVVNSPHQTPVSVKGGKGNKSRLTKCSRSGPQTPMSNVGSPSANNLTPAGPCRYDSSLGLLTKKFINLIKQAEDGILDLNKAADTLEVQKRRIYDITNVLEGIGLIEKKLKNRIQWKGLDVSRSGDVDDNYAGLQAEVENLSMEERGLDEQIREMQERLRDLSEDENNQRWLFVTEEDIKGLPCFQNETLIAIKAPHGTTLEVPDPDEVVDYPQRRYRIVLRSTMGPIDVYLVSQFEEKFEEINGVEVPPSLPSTSGFNETPATTVGTDDTRGKEIETREQDVHRMCSDLNASQDFVGGIMKIVPSVVDSDADYWLLSDADVSITDMWRTEPGVEWNELGTFHEDYSIDNVSTPQTQNPLPNNAPDMPSANPSSS 414
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 45486837 45490106 - Lag0010218.1 Lac9g2731 621657
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac9g2731 414 Gene3D - 164 274 - -
Lac9g2731 414 PANTHER TRANSCRIPTION FACTOR E2F 34 369 IPR015633 GO:0000978(InterPro)|GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)|GO:0006357(InterPro)|GO:0090575(PANTHER)
Lac9g2731 414 SUPERFAMILY E2F-DP heterodimerization region 169 274 IPR037241 -
Lac9g2731 414 Gene3D - 86 159 IPR036388 -
Lac9g2731 414 Coils Coil 170 207 - -
Lac9g2731 414 MobiDBLite consensus disorder prediction 42 87 - -
Lac9g2731 414 SMART E2F_TDP_2 92 157 IPR003316 GO:0005667(InterPro)|GO:0006355(InterPro)
Lac9g2731 414 Pfam E2F transcription factor CC-MB domain 173 273 IPR032198 GO:0046983(InterPro)
Lac9g2731 414 MobiDBLite consensus disorder prediction 288 307 - -
Lac9g2731 414 MobiDBLite consensus disorder prediction 388 414 - -
Lac9g2731 414 MobiDBLite consensus disorder prediction 286 311 - -
Lac9g2731 414 SUPERFAMILY Winged helix DNA-binding domain 92 155 IPR036390 -
Lac9g2731 414 Coils Coil 108 128 - -
Lac9g2731 414 MobiDBLite consensus disorder prediction 61 87 - -
Lac9g2731 414 Pfam E2F/DP family winged-helix DNA-binding domain 94 157 IPR003316 GO:0005667(InterPro)|GO:0006355(InterPro)
Lac9g2731 414 FunFam E2F transcription factor 1 86 159 - -
Lac9g2731 414 CDD E2F_DD 168 274 IPR032198 GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac3g0665 Lac-Chr3:5177653 Lac9g2731 Lac-Chr9:45486837 3.00E-10 dispersed
Lac6g0492 Lac-Chr6:4115161 Lac9g2731 Lac-Chr9:45486837 7.80E-60 transposed
Lac1g2307 Lac-Chr1:44479315 Lac9g2731 Lac-Chr9:45486837 2.90E-119 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
24523 PF16421 E2F_CC-MB 2.40E-35 No_clan Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac9g2731 K06620 - csv:101219318 758.829