Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lac9g2738 | ATGAAAATGGAAGACGATGGAATTGAAATCCCTTCCTATTTCCTTTGCCCCATTTCCCTCCAACTCATGAGAGATCCAGTCACAATCTCCACCGGCATCACTTACGATCGACCCAACATCGAAAAATGGCTCTTTTCATGCAACAAAAAGACTTGCCCCATTACCAAACAGCCCTTGTCTGATCCCGATCTGCTTACTCCAAATCACACTCTTCGCCGTTTGATCCAAGCTTGGTGCACTCTCAATGCTTCTCATGGAGTTGAAAGAATTCCAACTCCAAAGTCACCGATCGACAAGACCCATGTCGCCAAAATCCTCAAAGAGGCCAAAAAGTTCCCCAATTCCAACCATAAATGCCTTCTTGCACTTAAAGCCGTCGCCTTGGAGAGTGAAAGAAACCGCAAGCTTGTCGCTGAATCCGATGGAGCATTTGACTTTCTTGCCGCCGTTGTAAAGAGTGGTAATATTGGCAATATCGATTCGATTGAATTAGCGGTTGAAATTCTTTTTCACCTTAAATCCTCCGAACCCCATCTCAAGAATCTTGTGAATGGCGATGGTAACTTCTTGAACTCTCTTTCATTTGTCCTCCGACATGGGAACTGCCAATCTAGAGCCTATGCGGTGATGTTGCTCAAGTCAAGCTTGGAACTTGCCGATCCGATTCGGTTGATGAATGTTGAGGGCGAGCTTTTGTGTGAAATTGTGCGTGTGGTTCATGATCAGATATCTCACCAAGCCTCCAAATCGGCGTTGAAGGTTTTGGCGGAGGTCTGTCCATGGGGGCGGAACCGTGTCAAGGCGGTGGAGGGTGGTGCCGTTGGGGTTTTGGTGGAGTTGCTTTTGAACTCAGGCGAGAGGCGGTGGTCGGAGCTAGGGTTGGTGGTTTTGGATCAGCTTTGCGGGTGCGCGGAAGGGCGGGAGAAGTTGATGGGACACGGGGCTGGGGTTGCAGTCGTGTCGAAGAAAATACTTAGGGTTTCGGCGATGGCGAGTGATCGAGCAGTGAGGATATTGTCGTCGATATGTCGGTTTTCGGCGTCGGTGAAAGTAGTTCAAGAAATGTTGGAGGTTGGGGTGGTGGCCAAGTTGTGTTTGGTGTTGCAAATGGATTGTAGTTTGAAGACAAGGGAGAAGGCAAGGGAGATACTCAAGTTGCATTCTAGGGTTTGGAGTAACTCTTCTTGTATTCCTCCACATTTGTTGTCTGCTTATCCATCATCTTGA | 1227 | 48.08 | MKMEDDGIEIPSYFLCPISLQLMRDPVTISTGITYDRPNIEKWLFSCNKKTCPITKQPLSDPDLLTPNHTLRRLIQAWCTLNASHGVERIPTPKSPIDKTHVAKILKEAKKFPNSNHKCLLALKAVALESERNRKLVAESDGAFDFLAAVVKSGNIGNIDSIELAVEILFHLKSSEPHLKNLVNGDGNFLNSLSFVLRHGNCQSRAYAVMLLKSSLELADPIRLMNVEGELLCEIVRVVHDQISHQASKSALKVLAEVCPWGRNRVKAVEGGAVGVLVELLLNSGERRWSELGLVVLDQLCGCAEGREKLMGHGAGVAVVSKKILRVSAMASDRAVRILSSICRFSASVKVVQEMLEVGVVAKLCLVLQMDCSLKTREKAREILKLHSRVWSNSSCIPPHLLSAYPSS | 408 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 9 | 45540783 | 45542009 | - | Lag0010225.1 | Lac9g2738 | 621664 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lac9g2738 | 408 | ProSiteProfiles | U-box domain profile. | 9 | 85 | IPR003613 | GO:0004842(InterPro)|GO:0016567(InterPro) | |
| Lac9g2738 | 408 | FunFam | RING-type E3 ubiquitin transferase | 3 | 88 | - | - | |
| Lac9g2738 | 408 | Gene3D | - | 94 | 399 | IPR011989 | - | |
| Lac9g2738 | 408 | CDD | RING-Ubox_PUB | 11 | 64 | IPR045210 | - | |
| Lac9g2738 | 408 | SUPERFAMILY | ARM repeat | 117 | 380 | IPR016024 | - | |
| Lac9g2738 | 408 | SMART | Ubox_2 | 13 | 78 | IPR003613 | GO:0004842(InterPro)|GO:0016567(InterPro) | |
| Lac9g2738 | 408 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 1 | 89 | IPR013083 | - | |
| Lac9g2738 | 408 | PANTHER | WDSAM1 PROTEIN | 6 | 404 | IPR045185 | GO:0061630(InterPro) | |
| Lac9g2738 | 408 | Pfam | U-box domain | 10 | 80 | IPR003613 | GO:0004842(InterPro)|GO:0016567(InterPro) | |
| Lac9g2738 | 408 | SUPERFAMILY | RING/U-box | 4 | 84 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lac1g1729 | Lac-Chr1:38772172 | Lac9g2738 | Lac-Chr9:45540783 | 6.00E-108 | dispersed | |
| Lac3g1539 | Lac-Chr3:14372077 | Lac9g2738 | Lac-Chr9:45540783 | 1.80E-38 | dispersed | |
| Lac3g1540 | Lac-Chr3:14375134 | Lac9g2738 | Lac-Chr9:45540783 | 2.60E-47 | dispersed | |
| Lac3g2896 | Lac-Chr3:46261296 | Lac9g2738 | Lac-Chr9:45540783 | 2.90E-14 | dispersed | |
| Lac5g2555 | Lac-Chr5:44126330 | Lac9g2738 | Lac-Chr9:45540783 | 6.70E-46 | dispersed | |
| Lac6g0235 | Lac-Chr6:1897139 | Lac9g2738 | Lac-Chr9:45540783 | 1.70E-28 | dispersed | |
| Lac7g0371 | Lac-Chr7:2846723 | Lac9g2738 | Lac-Chr9:45540783 | 1.10E-53 | dispersed | |
| Lac9g2481 | Lac-Chr9:43655656 | Lac9g2738 | Lac-Chr9:45540783 | 5.90E-15 | dispersed | |
| Lac9g2738 | Lac-Chr9:45540783 | Lac13g0414 | Lac-Chr13:2909812 | 1.70E-06 | dispersed | |
| Lac11g0229 | Lac-Chr11:2256171 | Lac9g2738 | Lac-Chr9:45540783 | 5.80E-45 | transposed | |
| Lac13g1308 | Lac-Chr13:12049235 | Lac9g2738 | Lac-Chr9:45540783 | 6.70E-49 | transposed | |
| Lac1g2397 | Lac-Chr1:45362914 | Lac9g2738 | Lac-Chr9:45540783 | 3.00E-35 | transposed | |
| Lac3g1529 | Lac-Chr3:14264821 | Lac9g2738 | Lac-Chr9:45540783 | 3.50E-76 | transposed | |
| Lac9g0248 | Lac-Chr9:3993895 | Lac9g2738 | Lac-Chr9:45540783 | 2.80E-30 | transposed | |
| Lac10g2755 | Lac-Chr10:42047698 | Lac9g2738 | Lac-Chr9:45540783 | 1.10E-111 | wgd |
Pathway information