Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac9g2746 ATGTCACTGGACATGATGGCATCAGAACGTGTTTGTTATGTTCACTGCAACTTCTGCAACACCATTTTAGCGGTAAGTGTTCCATGCAACAGCATGTTCACTCTCGTGACTGTGAGATGTGGGCATTGTTCAAATTTGCTGTCTGTAAACATGGGTGCTTCTCTCCAAGTTGTTCCTCCTCAAGATTCCCAACAGGGTCACAAACAGCAGCAAGTGAGCACTGGAGATTCGAGCAGGGACAGAGGTTCTTCTTCTAAATGCAGTAAAATCAGCCCTCTTGATTCTGCTGAACGTGACCAACACAGAATCCCTCCTATTCGCCCACCGGAGAAAAGACAGCGTGTTCCATCTGCATATAATAGGTTCATCAAAGAGGAAATCCAAAGGATTAAGGCTAATAATCCTGACATAAGCCACAGAGAAGCCTTTAGCACAGCAGCTAAAAATTGGGCACATTTTCCTCACATCCACTTTGGGCTGAAGCTGGATGGAAATAAGCAAACAAATTAA 510 44.31 MSLDMMASERVCYVHCNFCNTILAVSVPCNSMFTLVTVRCGHCSNLLSVNMGASLQVVPPQDSQQGHKQQQVSTGDSSRDRGSSSKCSKISPLDSAERDQHRIPPIRPPEKRQRVPSAYNRFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPHIHFGLKLDGNKQTN 169
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 45626609 45631947 - Lag0010233.1 Lac9g2746 621672

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lac9g2746 169 FunFam Axial regulator YABBY 105 169 - -
Lac9g2746 169 CDD HMG-box_SF 114 150 - -
Lac9g2746 169 PANTHER PROTEIN YABBY 6-RELATED 6 167 IPR006780 GO:0005634(PANTHER)|GO:0007275(InterPro)|GO:0010158(PANTHER)|GO:0045165(PANTHER)
Lac9g2746 169 SUPERFAMILY HMG-box 105 153 IPR036910 -
Lac9g2746 169 MobiDBLite consensus disorder prediction 58 91 - -
Lac9g2746 169 MobiDBLite consensus disorder prediction 92 109 - -
Lac9g2746 169 Pfam YABBY protein 7 160 IPR006780 GO:0007275(InterPro)
Lac9g2746 169 MobiDBLite consensus disorder prediction 58 117 - -
Lac9g2746 169 Gene3D High mobility group box domain 96 155 IPR036910 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac9g2746 K25796 - - csv:101222154 311.997
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac11g2250 Lac-Chr11:38533276 Lac9g2746 Lac-Chr9:45626609 1.20E-44 dispersed
Lac13g0386 Lac-Chr13:2745920 Lac9g2746 Lac-Chr9:45626609 7.00E-18 dispersed
Lac3g0792 Lac-Chr3:6309430 Lac9g2746 Lac-Chr9:45626609 1.30E-49 dispersed
Lac5g0469 Lac-Chr5:5300588 Lac9g2746 Lac-Chr9:45626609 2.00E-14 dispersed
Lac6g1318 Lac-Chr6:13612793 Lac9g2746 Lac-Chr9:45626609 1.30E-25 dispersed
Lac9g2746 Lac-Chr9:45626609 Lac6g2925 Lac-Chr6:46896306 1.40E-50 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lac11g2250 . 78 235 C2C2-YABBY Transcription Factor Family AT2G45190 58.7 2.1e-43 172.9
Lac9g2746 . 1 167 C2C2-YABBY Transcription Factor Family AT1G08465 67.9 6.8e-56 214.5
Lac11g2250 . 34 225 C2C2-YABBY Transcription Factor Family AT1G08465 53.6 3.5e-44 175.6
Lac3g0792 . 5 178 C2C2-YABBY Transcription Factor Family AT1G08465 56.2 8.7e-43 171.0
Lac11g2250 . 45 234 C2C2-YABBY Transcription Factor Family AT4G00180 54.8 5.8e-51 198.4
Lac13g0189 . 1 164 C2C2-YABBY Transcription Factor Family AT1G23420 53.7 1.7e-39 160.6
Lac3g0792 . 7 174 C2C2-YABBY Transcription Factor Family AT2G26580 72.0 1.8e-63 239.6
Lac6g2925 . 8 169 C2C2-YABBY Transcription Factor Family AT2G26580 74.1 1.5e-62 236.5
Lac9g2746 . 1 168 C2C2-YABBY Transcription Factor Family AT2G26580 60.9 2.5e-49 192.6
Lac11g2250 . 34 198 C2C2-YABBY Transcription Factor Family AT2G26580 54.1 5.4e-44 174.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004363 1 4 0 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 1 1 1 2 1 1 1 1 1 1 2 2 41
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
24525 PF04690 YABBY 1.20E-73 CL0114 Lac TF