Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac9g2747 ATGTCACTCGAGTTTCATTCTGTGAAAAACTGCCATGTCGATTCGAACTTCTCCACATTACCGAAAGCGAGCGGTGGAAATCTCTCTCGTGGTCTATTGTTCTCCCTCGGCCAGTGGTGTTTTTGCATTCTGCACTCCGCCGTGGACTTCACAATGCCGGATATTAGAAAATGGTTCATGAAACCACACGACAAAGACAACGGCAGTGCGTCAAAGCAAGCAAAACCTGCTCCAAGCAACTTAGAGAAACCCGCTTCAGCTGAACTACAGTCCGGAAAAACAGGGGTGAGTGGTGGGGAAAGTACTGGCAGAAGGATAACTAGCAAGTATTTTGCCTCAGAAAAGCAGAAGTCTAAGGATACAAAAGAAACAGAGGAACTCCCGAATAAACGGAAGTCTCCACAGGATGCTAAGGAATCACCGGCCAAACGAAAGTCTCCACAGGATGCTAAGGAATCACCAGCCAAAAGAAAGTCTCAAAAGGATAGTGAGGAATCACCGAAAGCTCGAGCTTTAAAAAAATCAAACAAAATTGGTGACAATGATGATGATGATGTTTTTACTAGTTCTAGAAAGAACTTGTCCGATGTCACTCCCAACAAGAAGTTGAAGAGTGGTTCTGGAAAGGGAATTCCACAGAAACCTGTAGAAACTGAAGAGAGTGATGATGAGGAAACTAAGGTTACCGAGCCTTCTCTGAAGCCTAGTGGAAGGGGTAGGGGGGGAAGAGGTTCATCTGCTGCAACTGTTGGTGGTAGAGACAGAGGTGGTGGGCGGGGTGGATTTATGAATTTTGGGGAAAGGAAAGATCCTCCACATAAAGGAGAAAAGGAAGTCCCTGAAGGTGCACCTGACTGTTTGGCTGGTTTAACTTTTGTAATTAGTGGAACCCTCGACAGTTTGGAACGAGAAGAAGCAGAAGATTTGATTAAGCGCCATGGTGGTCGAGTAACTGGATCTGTCAGCAAAAAAACGAATTATCTACTATGTGATGAAGATATTGGTGGCCGAAAATCTTCCAAAGCAAAAGAGCTGGGAACTGGTTTTCTCACTGAGGATGGCTTATTAGATATGATCCGTGCATCAGGCACAAAAGCTCCTCCAAGGCATGATACTAAAAAATCTTTGGTTAAGTCTGTGGAATCTCCAACAGAGAACATTTCCCAGAAAGTGCAAGCAAAGACACGCAAAGATTTGACTGCTGGTGCTTCACCTGCTAAGCAAAAAAGCCGAACAGTTGAATCTTCATCCCTAACATGGACAGAAAAATATAGGCCAAAGGTTCCAAATGACATTATAGGCAATCAGTCACTGGTCAAACAACTTCATGATTGGTTGGCACATTGGAATGAGAACTTCCTTGATGGTGGAAGCAAAAAGAAGGGCAAAAAGCTCAATGATTCTGGTGCCAAAAAAGCTGTCTTGTTATGTGGAGGTCCTGGCATAGGTAAAACTACATCTGCTAAATTGGTTAGCAAGATGCTTGGTTATGAGGCTATAGAGGTAAATGCCAGCGATAATCGGGGTAAAGCAGATGCAAAAATTCAAAAGGGAATCAGTGGAAGCAATGCAAATTCTATAAAGGAGCTTATCAGCAATGAATCTTTGCATTTCAAAATGGATCGGCCAAAACACCCCAAAACTGTGTTGATTATGGACGAGGTAGATGGAATGTCTGCTGGAGATAGGGGTGGAGTTGCTGATCTGATTGCAAGCATTAAAATCTCCAAAATTCCAATTATCTGCATCTGTAATGACCGGTACAGCCAGAAGCTAAAGAGCCTTGTGAATTATTGTCTGATTCTCAGCTATAGGAAACCTACAAAACAACAGATGGCAAAAAGATTGATTCAAGTTGCAAATGCAGAAGGCCTTCAAGTTAATGAGATTGCTCTTGAGGAACTAGCAGAAAGAGTTAATGGGGATATGCGTATGGCATTAAATCAGTTGCAGTACCTGAGTCTGTCAATGTCAGTTATTAAATATGACGATATTCGTCAACGGCTTATGAGCAGTATGAAAGACGAAGACATCTCACCATTCACTGCTGTTGACAAGCTGTTTGGTTTTAATTCTGGGAAGTTAAGGATGGATGAACGGATAGACCTCAGCATGAGTGATCTTGATCTAGTCCCTCTTCTTATTCAGGAAAATTATGTTAATTATAGGCCAAGCTCTGTTAGTAAGGATGAAAGTGGGATAAAGCGCATGGATTTGATTGCCCGTGCAGCTGAATCTATTGCAGATGGGGATATAATCAATGTACAGATTCGAAGGCATCGACAGTGGCAACTCTCTCAAAGTAGTTCTATTGCTTCTTGTGTAATCCCAGCTTCACTATTGCATGGGCAAAGAGAAACGCTTGAGCAGGGAGAGCGTAATTTTAATAGATTTAGTGGATGGCTGGGAAAAAATTCAACATTTGGAAAAAATATGAGGCTTTTGGAGGATTTGCATGTTCACATTCTTGCTTCTCGGGAGTCCTGCTCAGGGAGGGAACACATACGAGTTGAGAACCTTACTCTATTTCTAAAGAGGTTGACTGAGCCCCTGCACACGCTGCCTAAGGATGAAGCTGTTAAAATGGTTGTTGAATTTATGAGTCTATATTCGATCAGTCAGGAGGATTATGATACTGTTGTGGAGTTGTCAAAATTTCAGGGTCGTAAGAATCCATTGGAAGGCGTGGCCCCTGCTGTCAAAGCTGCTCTAACAAAGGCATACAAAGAAGTAAGCAAGACACACATGGTGCGGGCTGCAGATCTTATTACACTTCCTGGAATGAAAAAAGCCCCTAAGAAGCGAATTGCAGCGATTCTAGAACCAGCTGAGGATACAATTGAGGGCGCTGGTGGAGACACATTGGCGGAAAGTGACGATGAGAACTCTTTGGACAATGAGGGCGCTGAAGACTCCACAAACGGTGAGAAGCTGCAACTGGAACTTCAAAGCTTGAATAAGAAAGGAATGCAAGTGCAGTTGGATTTGAAGGCCGTGGAAAAGTCGAGCGCCAAGAAATCCGGTGGCAGAGGAAGAGGAGGTGGTTCCCAGGCGTCAGAGAAGAAAGGTGGGCGAGGTTCAGGATCTGCCACGAAGAGGAAAAGATGA 3108 43.56 MSLEFHSVKNCHVDSNFSTLPKASGGNLSRGLLFSLGQWCFCILHSAVDFTMPDIRKWFMKPHDKDNGSASKQAKPAPSNLEKPASAELQSGKTGVSGGESTGRRITSKYFASEKQKSKDTKETEELPNKRKSPQDAKESPAKRKSPQDAKESPAKRKSQKDSEESPKARALKKSNKIGDNDDDDVFTSSRKNLSDVTPNKKLKSGSGKGIPQKPVETEESDDEETKVTEPSLKPSGRGRGGRGSSAATVGGRDRGGGRGGFMNFGERKDPPHKGEKEVPEGAPDCLAGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSVSKKTNYLLCDEDIGGRKSSKAKELGTGFLTEDGLLDMIRASGTKAPPRHDTKKSLVKSVESPTENISQKVQAKTRKDLTAGASPAKQKSRTVESSSLTWTEKYRPKVPNDIIGNQSLVKQLHDWLAHWNENFLDGGSKKKGKKLNDSGAKKAVLLCGGPGIGKTTSAKLVSKMLGYEAIEVNASDNRGKADAKIQKGISGSNANSIKELISNESLHFKMDRPKHPKTVLIMDEVDGMSAGDRGGVADLIASIKISKIPIICICNDRYSQKLKSLVNYCLILSYRKPTKQQMAKRLIQVANAEGLQVNEIALEELAERVNGDMRMALNQLQYLSLSMSVIKYDDIRQRLMSSMKDEDISPFTAVDKLFGFNSGKLRMDERIDLSMSDLDLVPLLIQENYVNYRPSSVSKDESGIKRMDLIARAAESIADGDIINVQIRRHRQWQLSQSSSIASCVIPASLLHGQRETLEQGERNFNRFSGWLGKNSTFGKNMRLLEDLHVHILASRESCSGREHIRVENLTLFLKRLTEPLHTLPKDEAVKMVVEFMSLYSISQEDYDTVVELSKFQGRKNPLEGVAPAVKAALTKAYKEVSKTHMVRAADLITLPGMKKAPKKRIAAILEPAEDTIEGAGGDTLAESDDENSLDNEGAEDSTNGEKLQLELQSLNKKGMQVQLDLKAVEKSSAKKSGGRGRGGGSQASEKKGGRGSGSATKRKR 1035
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 45641661 45654985 + Lag0010234.1 Lac9g2747 621673

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lac9g2747 1035 Gene3D - 679 789 - -
Lac9g2747 1035 PANTHER CHROMOSOME TRANSMISSION FIDELITY FACTOR 18 126 1004 - GO:0003677(PANTHER)|GO:0005634(PANTHER)
Lac9g2747 1035 MobiDBLite consensus disorder prediction 266 281 - -
Lac9g2747 1035 MobiDBLite consensus disorder prediction 405 419 - -
Lac9g2747 1035 SMART BRCT_7 284 362 IPR001357 -
Lac9g2747 1035 Gene3D BRCT domain 259 361 IPR036420 -
Lac9g2747 1035 MobiDBLite consensus disorder prediction 947 977 - -
Lac9g2747 1035 SMART AAA_5 470 608 IPR003593 GO:0016887(InterPro)
Lac9g2747 1035 MobiDBLite consensus disorder prediction 379 395 - -
Lac9g2747 1035 SUPERFAMILY post-AAA+ oligomerization domain-like 678 823 IPR008921 GO:0003677(InterPro)|GO:0006260(InterPro)
Lac9g2747 1035 ProSiteProfiles BRCT domain profile. 282 360 IPR001357 -
Lac9g2747 1035 MobiDBLite consensus disorder prediction 110 190 - -
Lac9g2747 1035 Gene3D - 418 606 IPR027417 -
Lac9g2747 1035 MobiDBLite consensus disorder prediction 993 1035 - -
Lac9g2747 1035 Pfam BRCA1 C Terminus (BRCT) domain 284 359 IPR001357 -
Lac9g2747 1035 MobiDBLite consensus disorder prediction 63 283 - -
Lac9g2747 1035 SUPERFAMILY BRCT domain 282 361 IPR036420 -
Lac9g2747 1035 CDD HLD_clamp_RFC 607 665 IPR047854 -
Lac9g2747 1035 Pfam ATPase family associated with various cellular activities (AAA) 474 586 IPR003959 GO:0005524(InterPro)|GO:0016887(InterPro)
Lac9g2747 1035 MobiDBLite consensus disorder prediction 362 419 - -
Lac9g2747 1035 FunFam Replication factor C subunit 1 679 788 - -
Lac9g2747 1035 CDD BRCT_RFC1 282 360 - -
Lac9g2747 1035 MobiDBLite consensus disorder prediction 364 378 - -
Lac9g2747 1035 CDD AAA 467 570 - -
Lac9g2747 1035 MobiDBLite consensus disorder prediction 84 109 - -
Lac9g2747 1035 FunFam Replication factor C subunit 1 607 678 - -
Lac9g2747 1035 FunFam Replication factor C subunit 1 258 361 - -
Lac9g2747 1035 Pfam Replication factor RFC1 C terminal domain 747 909 IPR013725 GO:0003689(InterPro)|GO:0005524(InterPro)|GO:0005663(InterPro)|GO:0006260(InterPro)
Lac9g2747 1035 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 418 667 IPR027417 -
Lac9g2747 1035 FunFam Replication factor C subunit 1 418 606 - -
Lac9g2747 1035 MobiDBLite consensus disorder prediction 215 231 - -
Lac9g2747 1035 Gene3D - 607 677 - -
Lac9g2747 1035 PIRSF RFC1 51 1011 IPR012178 GO:0003689(InterPro)|GO:0005524(InterPro)|GO:0005663(InterPro)|GO:0006260(InterPro)|GO:0006281(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac9g2747 K10754 - - csv:101204361 1625.53
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac12g1394 Lac-Chr12:23379581 Lac9g2747 Lac-Chr9:45641661 9.70E-56 dispersed
Lac3g2882 Lac-Chr3:46070464 Lac9g2747 Lac-Chr9:45641661 2.00E-48 dispersed
Lac4g0414 Lac-Chr4:9564377 Lac9g2747 Lac-Chr9:45641661 9.80E-55 dispersed
Lac7g0477 Lac-Chr7:3797400 Lac9g2747 Lac-Chr9:45641661 4.40E-21 dispersed
Lac9g2747 Lac-Chr9:45641661 Lac1g1062 Lac-Chr1:27587512 1.20E-96 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lac12g1517 . 659 1335 Core DNA Replication Machinery Family AT4G14700 66.0 8.5e-260 894.0
Lac12g1517 . 659 1335 Core DNA Replication Machinery Family AT4G12620 67.8 6.1e-266 914.4
Lac6g0338 . 2 361 Core DNA Replication Machinery Family AT2G37560 67.2 7.3e-144 507.7
Lac11g1707 . 15 445 Core DNA Replication Machinery Family AT5G16690 53.0 3.3e-122 436.8
Lac13g1196 . 146 556 Core DNA Replication Machinery Family AT2G01120 63.4 3.2e-149 525.8
Lac13g2285 . 1 254 Core DNA Replication Machinery Family AT1G26840 68.9 1.5e-94 343.6
Lac12g0052 . 61 854 Core DNA Replication Machinery Family AT1G79150 60.2 5.7e-251 864.8
Lac7g1551 . 9 939 Core DNA Replication Machinery Family AT1G44900 75.2 0.0e+00 1345.5
Lac1g3505 . 93 642 Core DNA Replication Machinery Family AT5G46280 82.9 1.3e-262 902.9
Lac4g1433 . 1 845 Core DNA Replication Machinery Family AT2G16440 73.5 0.0e+00 1183.3
Lac6g2877 . 1 735 Core DNA Replication Machinery Family AT2G07690 78.4 0.0e+00 1117.1
Lac7g1919 . 9 358 Core DNA Replication Machinery Family AT2G07690 68.4 3.5e-132 469.9
Lac1g3681 . 1 832 Core DNA Replication Machinery Family AT5G44635 72.7 0.0e+00 1191.8
Lac4g2531 . 11 722 Core DNA Replication Machinery Family AT4G02060 85.8 0.0e+00 1221.8
Lac9g2413 . 3 234 Core DNA Replication Machinery Family AT2G29680 65.1 9.3e-79 292.0
Lac12g1686 . 126 352 Core DNA Replication Machinery Family AT2G29680 55.1 1.5e-76 284.6
Lac12g1686 . 100 353 Core DNA Replication Machinery Family AT1G07270 53.1 1.5e-75 281.2
Lac9g2413 . 3 204 Core DNA Replication Machinery Family AT1G07270 65.8 1.6e-69 261.2
Lac4g1977 . 1 593 Core DNA Replication Machinery Family AT3G25100 77.4 1.4e-259 892.9
Lac10g3047 . 12 781 Core DNA Replication Machinery Family AT3G09660 73.4 0.0e+00 1102.8
Lac12g0230 . 10 642 Core DNA Replication Machinery Family AT2G14050 77.9 2.2e-287 985.3
Lac9g1824 . 1 411 Core DNA Replication Machinery Family AT2G20980 56.2 1.9e-119 426.8
Lac2g0961 . 1 965 Core DNA Replication Machinery Family AT1G77320 51.0 2.4e-264 909.4
Lac4g2802 . 1 200 Core DNA Replication Machinery Family AT1G80190 69.5 7.7e-77 284.3
Lac3g3108 . 144 288 Core DNA Replication Machinery Family AT3G12530 73.8 7.5e-61 230.7
Lac8g2885 . 1 184 Core DNA Replication Machinery Family AT1G19080 68.5 2.4e-69 259.2
Lac8g2885 . 1 184 Core DNA Replication Machinery Family AT3G55490 68.5 2.4e-69 259.2
Lac7g0224 . 1 164 Core DNA Replication Machinery Family AT5G49010 62.0 4.5e-50 195.3
Lac9g1232 . 1 677 Core DNA Replication Machinery Family AT5G67100 62.2 2.6e-262 903.3
Lac9g1235 . 1 803 Core DNA Replication Machinery Family AT5G67100 53.5 4.6e-214 743.0
Lac13g0083 . 4 622 Core DNA Replication Machinery Family AT1G67630 62.1 6.2e-218 754.6
Lac4g2157 . 1 432 Core DNA Replication Machinery Family AT1G67320 63.6 1.6e-173 606.7
Lac2g2776 . 1 430 Core DNA Replication Machinery Family AT5G41880 64.8 4.3e-168 588.6
Lac1g2327 . 1 1084 Core DNA Replication Machinery Family AT5G63960 79.5 0.0e+00 1754.2
Lac10g2621 . 1 438 Core DNA Replication Machinery Family AT2G42120 75.8 1.1e-205 713.4
Lac4g2157 . 1 432 Core DNA Replication Machinery Family AT1G67320 63.6 1.6e-173 606.7
Lac9g2692 . 1 2095 Core DNA Replication Machinery Family AT1G08260 71.1 0.0e+00 2957.9
Lac10g0329 . 5 2043 Core DNA Replication Machinery Family AT1G08260 68.3 0.0e+00 2828.9
Lac9g2692 . 9 2201 Core DNA Replication Machinery Family AT2G27120 67.5 0.0e+00 2916.3
Lac10g0329 . 28 2156 Core DNA Replication Machinery Family AT2G27120 65.6 0.0e+00 2797.7
Lac3g2732 . 7 535 Core DNA Replication Machinery Family AT5G22110 60.2 1.1e-177 620.5
Lac4g1082 . 9 338 Core DNA Replication Machinery Family AT5G22110 61.7 6.0e-123 438.7
Lac9g2747 . 52 989 Core DNA Replication Machinery Family AT5G22010 61.6 3.3e-308 1055.0
Lac1g1062 . 196 391 Core DNA Replication Machinery Family AT5G22010 69.4 5.8e-71 266.9
Lac12g1394 . 81 200 Core DNA Replication Machinery Family AT5G22010 76.1 6.0e-52 203.8
Lac4g0414 . 216 351 Core DNA Replication Machinery Family AT5G22010 59.3 1.9e-42 172.2
Lac5g0598 . 1 334 Core DNA Replication Machinery Family AT1G63160 90.7 9.5e-173 603.6
Lac1g1629 . 1 354 Core DNA Replication Machinery Family AT5G27740 85.6 1.2e-178 623.2
Lac2g0958 . 40 373 Core DNA Replication Machinery Family AT1G21690 81.5 5.4e-152 534.6
Lac8g1831 . 1 363 Core DNA Replication Machinery Family AT1G77470 76.1 2.6e-155 545.8
Lac6g3094 . 26 618 Core DNA Replication Machinery Family AT2G06510 69.0 1.4e-254 876.3
Lac5g0150 . 34 700 Core DNA Replication Machinery Family AT2G06510 52.1 1.9e-195 679.9
Lac3g0557 . 1 623 Core DNA Replication Machinery Family AT5G08020 68.6 8.6e-249 857.1
Lac5g0150 . 10 809 Core DNA Replication Machinery Family AT5G45400 51.9 9.4e-225 777.7
Lac3g0557 . 1 618 Core DNA Replication Machinery Family AT5G61000 66.9 1.5e-243 839.7
Lac5g0150 . 10 795 Core DNA Replication Machinery Family AT4G19130 55.1 6.6e-225 778.1
Lac3g3084 . 1 240 Core DNA Replication Machinery Family AT5G26680 92.1 2.0e-124 443.4
Lac3g3088 . 45 184 Core DNA Replication Machinery Family AT5G26680 76.4 8.2e-57 218.8
Lac7g0388 . 1 1119 Core DNA Replication Machinery Family AT1G08840 52.3 1.3e-297 1020.0
Lac7g0436 . 129 247 Core DNA Replication Machinery Family AT1G08840 72.5 3.0e-39 161.8
Lac7g1212 . 1 297 Core DNA Replication Machinery Family AT2G25100 66.7 3.7e-114 408.7
Lac9g2623 . 44 804 Core DNA Replication Machinery Family AT1G08130 69.5 2.6e-298 1021.9
Lac9g2623 . 204 804 Core DNA Replication Machinery Family AT1G49250 69.3 2.0e-243 839.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009501 1 4 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 33