Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac9g2747 ATGTCACTCGAGTTTCATTCTGTGAAAAACTGCCATGTCGATTCGAACTTCTCCACATTACCGAAAGCGAGCGGTGGAAATCTCTCTCGTGGTCTATTGTTCTCCCTCGGCCAGTGGTGTTTTTGCATTCTGCACTCCGCCGTGGACTTCACAATGCCGGATATTAGAAAATGGTTCATGAAACCACACGACAAAGACAACGGCAGTGCGTCAAAGCAAGCAAAACCTGCTCCAAGCAACTTAGAGAAACCCGCTTCAGCTGAACTACAGTCCGGAAAAACAGGGGTGAGTGGTGGGGAAAGTACTGGCAGAAGGATAACTAGCAAGTATTTTGCCTCAGAAAAGCAGAAGTCTAAGGATACAAAAGAAACAGAGGAACTCCCGAATAAACGGAAGTCTCCACAGGATGCTAAGGAATCACCGGCCAAACGAAAGTCTCCACAGGATGCTAAGGAATCACCAGCCAAAAGAAAGTCTCAAAAGGATAGTGAGGAATCACCGAAAGCTCGAGCTTTAAAAAAATCAAACAAAATTGGTGACAATGATGATGATGATGTTTTTACTAGTTCTAGAAAGAACTTGTCCGATGTCACTCCCAACAAGAAGTTGAAGAGTGGTTCTGGAAAGGGAATTCCACAGAAACCTGTAGAAACTGAAGAGAGTGATGATGAGGAAACTAAGGTTACCGAGCCTTCTCTGAAGCCTAGTGGAAGGGGTAGGGGGGGAAGAGGTTCATCTGCTGCAACTGTTGGTGGTAGAGACAGAGGTGGTGGGCGGGGTGGATTTATGAATTTTGGGGAAAGGAAAGATCCTCCACATAAAGGAGAAAAGGAAGTCCCTGAAGGTGCACCTGACTGTTTGGCTGGTTTAACTTTTGTAATTAGTGGAACCCTCGACAGTTTGGAACGAGAAGAAGCAGAAGATTTGATTAAGCGCCATGGTGGTCGAGTAACTGGATCTGTCAGCAAAAAAACGAATTATCTACTATGTGATGAAGATATTGGTGGCCGAAAATCTTCCAAAGCAAAAGAGCTGGGAACTGGTTTTCTCACTGAGGATGGCTTATTAGATATGATCCGTGCATCAGGCACAAAAGCTCCTCCAAGGCATGATACTAAAAAATCTTTGGTTAAGTCTGTGGAATCTCCAACAGAGAACATTTCCCAGAAAGTGCAAGCAAAGACACGCAAAGATTTGACTGCTGGTGCTTCACCTGCTAAGCAAAAAAGCCGAACAGTTGAATCTTCATCCCTAACATGGACAGAAAAATATAGGCCAAAGGTTCCAAATGACATTATAGGCAATCAGTCACTGGTCAAACAACTTCATGATTGGTTGGCACATTGGAATGAGAACTTCCTTGATGGTGGAAGCAAAAAGAAGGGCAAAAAGCTCAATGATTCTGGTGCCAAAAAAGCTGTCTTGTTATGTGGAGGTCCTGGCATAGGTAAAACTACATCTGCTAAATTGGTTAGCAAGATGCTTGGTTATGAGGCTATAGAGGTAAATGCCAGCGATAATCGGGGTAAAGCAGATGCAAAAATTCAAAAGGGAATCAGTGGAAGCAATGCAAATTCTATAAAGGAGCTTATCAGCAATGAATCTTTGCATTTCAAAATGGATCGGCCAAAACACCCCAAAACTGTGTTGATTATGGACGAGGTAGATGGAATGTCTGCTGGAGATAGGGGTGGAGTTGCTGATCTGATTGCAAGCATTAAAATCTCCAAAATTCCAATTATCTGCATCTGTAATGACCGGTACAGCCAGAAGCTAAAGAGCCTTGTGAATTATTGTCTGATTCTCAGCTATAGGAAACCTACAAAACAACAGATGGCAAAAAGATTGATTCAAGTTGCAAATGCAGAAGGCCTTCAAGTTAATGAGATTGCTCTTGAGGAACTAGCAGAAAGAGTTAATGGGGATATGCGTATGGCATTAAATCAGTTGCAGTACCTGAGTCTGTCAATGTCAGTTATTAAATATGACGATATTCGTCAACGGCTTATGAGCAGTATGAAAGACGAAGACATCTCACCATTCACTGCTGTTGACAAGCTGTTTGGTTTTAATTCTGGGAAGTTAAGGATGGATGAACGGATAGACCTCAGCATGAGTGATCTTGATCTAGTCCCTCTTCTTATTCAGGAAAATTATGTTAATTATAGGCCAAGCTCTGTTAGTAAGGATGAAAGTGGGATAAAGCGCATGGATTTGATTGCCCGTGCAGCTGAATCTATTGCAGATGGGGATATAATCAATGTACAGATTCGAAGGCATCGACAGTGGCAACTCTCTCAAAGTAGTTCTATTGCTTCTTGTGTAATCCCAGCTTCACTATTGCATGGGCAAAGAGAAACGCTTGAGCAGGGAGAGCGTAATTTTAATAGATTTAGTGGATGGCTGGGAAAAAATTCAACATTTGGAAAAAATATGAGGCTTTTGGAGGATTTGCATGTTCACATTCTTGCTTCTCGGGAGTCCTGCTCAGGGAGGGAACACATACGAGTTGAGAACCTTACTCTATTTCTAAAGAGGTTGACTGAGCCCCTGCACACGCTGCCTAAGGATGAAGCTGTTAAAATGGTTGTTGAATTTATGAGTCTATATTCGATCAGTCAGGAGGATTATGATACTGTTGTGGAGTTGTCAAAATTTCAGGGTCGTAAGAATCCATTGGAAGGCGTGGCCCCTGCTGTCAAAGCTGCTCTAACAAAGGCATACAAAGAAGTAAGCAAGACACACATGGTGCGGGCTGCAGATCTTATTACACTTCCTGGAATGAAAAAAGCCCCTAAGAAGCGAATTGCAGCGATTCTAGAACCAGCTGAGGATACAATTGAGGGCGCTGGTGGAGACACATTGGCGGAAAGTGACGATGAGAACTCTTTGGACAATGAGGGCGCTGAAGACTCCACAAACGGTGAGAAGCTGCAACTGGAACTTCAAAGCTTGAATAAGAAAGGAATGCAAGTGCAGTTGGATTTGAAGGCCGTGGAAAAGTCGAGCGCCAAGAAATCCGGTGGCAGAGGAAGAGGAGGTGGTTCCCAGGCGTCAGAGAAGAAAGGTGGGCGAGGTTCAGGATCTGCCACGAAGAGGAAAAGATGA 3108 43.56 MSLEFHSVKNCHVDSNFSTLPKASGGNLSRGLLFSLGQWCFCILHSAVDFTMPDIRKWFMKPHDKDNGSASKQAKPAPSNLEKPASAELQSGKTGVSGGESTGRRITSKYFASEKQKSKDTKETEELPNKRKSPQDAKESPAKRKSPQDAKESPAKRKSQKDSEESPKARALKKSNKIGDNDDDDVFTSSRKNLSDVTPNKKLKSGSGKGIPQKPVETEESDDEETKVTEPSLKPSGRGRGGRGSSAATVGGRDRGGGRGGFMNFGERKDPPHKGEKEVPEGAPDCLAGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSVSKKTNYLLCDEDIGGRKSSKAKELGTGFLTEDGLLDMIRASGTKAPPRHDTKKSLVKSVESPTENISQKVQAKTRKDLTAGASPAKQKSRTVESSSLTWTEKYRPKVPNDIIGNQSLVKQLHDWLAHWNENFLDGGSKKKGKKLNDSGAKKAVLLCGGPGIGKTTSAKLVSKMLGYEAIEVNASDNRGKADAKIQKGISGSNANSIKELISNESLHFKMDRPKHPKTVLIMDEVDGMSAGDRGGVADLIASIKISKIPIICICNDRYSQKLKSLVNYCLILSYRKPTKQQMAKRLIQVANAEGLQVNEIALEELAERVNGDMRMALNQLQYLSLSMSVIKYDDIRQRLMSSMKDEDISPFTAVDKLFGFNSGKLRMDERIDLSMSDLDLVPLLIQENYVNYRPSSVSKDESGIKRMDLIARAAESIADGDIINVQIRRHRQWQLSQSSSIASCVIPASLLHGQRETLEQGERNFNRFSGWLGKNSTFGKNMRLLEDLHVHILASRESCSGREHIRVENLTLFLKRLTEPLHTLPKDEAVKMVVEFMSLYSISQEDYDTVVELSKFQGRKNPLEGVAPAVKAALTKAYKEVSKTHMVRAADLITLPGMKKAPKKRIAAILEPAEDTIEGAGGDTLAESDDENSLDNEGAEDSTNGEKLQLELQSLNKKGMQVQLDLKAVEKSSAKKSGGRGRGGGSQASEKKGGRGSGSATKRKR 1035
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 45641661 45654985 + Lag0010234.1 Lac9g2747 621673
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac9g2747 1035 Gene3D - 679 789 - -
Lac9g2747 1035 PANTHER CHROMOSOME TRANSMISSION FIDELITY FACTOR 18 126 1004 - GO:0003677(PANTHER)|GO:0005634(PANTHER)
Lac9g2747 1035 MobiDBLite consensus disorder prediction 266 281 - -
Lac9g2747 1035 MobiDBLite consensus disorder prediction 405 419 - -
Lac9g2747 1035 SMART BRCT_7 284 362 IPR001357 -
Lac9g2747 1035 Gene3D BRCT domain 259 361 IPR036420 -
Lac9g2747 1035 MobiDBLite consensus disorder prediction 947 977 - -
Lac9g2747 1035 SMART AAA_5 470 608 IPR003593 GO:0016887(InterPro)
Lac9g2747 1035 MobiDBLite consensus disorder prediction 379 395 - -
Lac9g2747 1035 SUPERFAMILY post-AAA+ oligomerization domain-like 678 823 IPR008921 GO:0003677(InterPro)|GO:0006260(InterPro)
Lac9g2747 1035 ProSiteProfiles BRCT domain profile. 282 360 IPR001357 -
Lac9g2747 1035 MobiDBLite consensus disorder prediction 110 190 - -
Lac9g2747 1035 Gene3D - 418 606 IPR027417 -
Lac9g2747 1035 MobiDBLite consensus disorder prediction 993 1035 - -
Lac9g2747 1035 Pfam BRCA1 C Terminus (BRCT) domain 284 359 IPR001357 -
Lac9g2747 1035 MobiDBLite consensus disorder prediction 63 283 - -
Lac9g2747 1035 SUPERFAMILY BRCT domain 282 361 IPR036420 -
Lac9g2747 1035 CDD HLD_clamp_RFC 607 665 IPR047854 -
Lac9g2747 1035 Pfam ATPase family associated with various cellular activities (AAA) 474 586 IPR003959 GO:0005524(InterPro)|GO:0016887(InterPro)
Lac9g2747 1035 MobiDBLite consensus disorder prediction 362 419 - -
Lac9g2747 1035 FunFam Replication factor C subunit 1 679 788 - -
Lac9g2747 1035 CDD BRCT_RFC1 282 360 - -
Lac9g2747 1035 MobiDBLite consensus disorder prediction 364 378 - -
Lac9g2747 1035 CDD AAA 467 570 - -
Lac9g2747 1035 MobiDBLite consensus disorder prediction 84 109 - -
Lac9g2747 1035 FunFam Replication factor C subunit 1 607 678 - -
Lac9g2747 1035 FunFam Replication factor C subunit 1 258 361 - -
Lac9g2747 1035 Pfam Replication factor RFC1 C terminal domain 747 909 IPR013725 GO:0003689(InterPro)|GO:0005524(InterPro)|GO:0005663(InterPro)|GO:0006260(InterPro)
Lac9g2747 1035 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 418 667 IPR027417 -
Lac9g2747 1035 FunFam Replication factor C subunit 1 418 606 - -
Lac9g2747 1035 MobiDBLite consensus disorder prediction 215 231 - -
Lac9g2747 1035 Gene3D - 607 677 - -
Lac9g2747 1035 PIRSF RFC1 51 1011 IPR012178 GO:0003689(InterPro)|GO:0005524(InterPro)|GO:0005663(InterPro)|GO:0006260(InterPro)|GO:0006281(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac12g1394 Lac-Chr12:23379581 Lac9g2747 Lac-Chr9:45641661 9.70E-56 dispersed
Lac3g2882 Lac-Chr3:46070464 Lac9g2747 Lac-Chr9:45641661 2.00E-48 dispersed
Lac4g0414 Lac-Chr4:9564377 Lac9g2747 Lac-Chr9:45641661 9.80E-55 dispersed
Lac7g0477 Lac-Chr7:3797400 Lac9g2747 Lac-Chr9:45641661 4.40E-21 dispersed
Lac9g2747 Lac-Chr9:45641661 Lac1g1062 Lac-Chr1:27587512 1.20E-96 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac9g2747 K10754 - csv:101204361 1625.53