Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lac9g2747 | ATGTCACTCGAGTTTCATTCTGTGAAAAACTGCCATGTCGATTCGAACTTCTCCACATTACCGAAAGCGAGCGGTGGAAATCTCTCTCGTGGTCTATTGTTCTCCCTCGGCCAGTGGTGTTTTTGCATTCTGCACTCCGCCGTGGACTTCACAATGCCGGATATTAGAAAATGGTTCATGAAACCACACGACAAAGACAACGGCAGTGCGTCAAAGCAAGCAAAACCTGCTCCAAGCAACTTAGAGAAACCCGCTTCAGCTGAACTACAGTCCGGAAAAACAGGGGTGAGTGGTGGGGAAAGTACTGGCAGAAGGATAACTAGCAAGTATTTTGCCTCAGAAAAGCAGAAGTCTAAGGATACAAAAGAAACAGAGGAACTCCCGAATAAACGGAAGTCTCCACAGGATGCTAAGGAATCACCGGCCAAACGAAAGTCTCCACAGGATGCTAAGGAATCACCAGCCAAAAGAAAGTCTCAAAAGGATAGTGAGGAATCACCGAAAGCTCGAGCTTTAAAAAAATCAAACAAAATTGGTGACAATGATGATGATGATGTTTTTACTAGTTCTAGAAAGAACTTGTCCGATGTCACTCCCAACAAGAAGTTGAAGAGTGGTTCTGGAAAGGGAATTCCACAGAAACCTGTAGAAACTGAAGAGAGTGATGATGAGGAAACTAAGGTTACCGAGCCTTCTCTGAAGCCTAGTGGAAGGGGTAGGGGGGGAAGAGGTTCATCTGCTGCAACTGTTGGTGGTAGAGACAGAGGTGGTGGGCGGGGTGGATTTATGAATTTTGGGGAAAGGAAAGATCCTCCACATAAAGGAGAAAAGGAAGTCCCTGAAGGTGCACCTGACTGTTTGGCTGGTTTAACTTTTGTAATTAGTGGAACCCTCGACAGTTTGGAACGAGAAGAAGCAGAAGATTTGATTAAGCGCCATGGTGGTCGAGTAACTGGATCTGTCAGCAAAAAAACGAATTATCTACTATGTGATGAAGATATTGGTGGCCGAAAATCTTCCAAAGCAAAAGAGCTGGGAACTGGTTTTCTCACTGAGGATGGCTTATTAGATATGATCCGTGCATCAGGCACAAAAGCTCCTCCAAGGCATGATACTAAAAAATCTTTGGTTAAGTCTGTGGAATCTCCAACAGAGAACATTTCCCAGAAAGTGCAAGCAAAGACACGCAAAGATTTGACTGCTGGTGCTTCACCTGCTAAGCAAAAAAGCCGAACAGTTGAATCTTCATCCCTAACATGGACAGAAAAATATAGGCCAAAGGTTCCAAATGACATTATAGGCAATCAGTCACTGGTCAAACAACTTCATGATTGGTTGGCACATTGGAATGAGAACTTCCTTGATGGTGGAAGCAAAAAGAAGGGCAAAAAGCTCAATGATTCTGGTGCCAAAAAAGCTGTCTTGTTATGTGGAGGTCCTGGCATAGGTAAAACTACATCTGCTAAATTGGTTAGCAAGATGCTTGGTTATGAGGCTATAGAGGTAAATGCCAGCGATAATCGGGGTAAAGCAGATGCAAAAATTCAAAAGGGAATCAGTGGAAGCAATGCAAATTCTATAAAGGAGCTTATCAGCAATGAATCTTTGCATTTCAAAATGGATCGGCCAAAACACCCCAAAACTGTGTTGATTATGGACGAGGTAGATGGAATGTCTGCTGGAGATAGGGGTGGAGTTGCTGATCTGATTGCAAGCATTAAAATCTCCAAAATTCCAATTATCTGCATCTGTAATGACCGGTACAGCCAGAAGCTAAAGAGCCTTGTGAATTATTGTCTGATTCTCAGCTATAGGAAACCTACAAAACAACAGATGGCAAAAAGATTGATTCAAGTTGCAAATGCAGAAGGCCTTCAAGTTAATGAGATTGCTCTTGAGGAACTAGCAGAAAGAGTTAATGGGGATATGCGTATGGCATTAAATCAGTTGCAGTACCTGAGTCTGTCAATGTCAGTTATTAAATATGACGATATTCGTCAACGGCTTATGAGCAGTATGAAAGACGAAGACATCTCACCATTCACTGCTGTTGACAAGCTGTTTGGTTTTAATTCTGGGAAGTTAAGGATGGATGAACGGATAGACCTCAGCATGAGTGATCTTGATCTAGTCCCTCTTCTTATTCAGGAAAATTATGTTAATTATAGGCCAAGCTCTGTTAGTAAGGATGAAAGTGGGATAAAGCGCATGGATTTGATTGCCCGTGCAGCTGAATCTATTGCAGATGGGGATATAATCAATGTACAGATTCGAAGGCATCGACAGTGGCAACTCTCTCAAAGTAGTTCTATTGCTTCTTGTGTAATCCCAGCTTCACTATTGCATGGGCAAAGAGAAACGCTTGAGCAGGGAGAGCGTAATTTTAATAGATTTAGTGGATGGCTGGGAAAAAATTCAACATTTGGAAAAAATATGAGGCTTTTGGAGGATTTGCATGTTCACATTCTTGCTTCTCGGGAGTCCTGCTCAGGGAGGGAACACATACGAGTTGAGAACCTTACTCTATTTCTAAAGAGGTTGACTGAGCCCCTGCACACGCTGCCTAAGGATGAAGCTGTTAAAATGGTTGTTGAATTTATGAGTCTATATTCGATCAGTCAGGAGGATTATGATACTGTTGTGGAGTTGTCAAAATTTCAGGGTCGTAAGAATCCATTGGAAGGCGTGGCCCCTGCTGTCAAAGCTGCTCTAACAAAGGCATACAAAGAAGTAAGCAAGACACACATGGTGCGGGCTGCAGATCTTATTACACTTCCTGGAATGAAAAAAGCCCCTAAGAAGCGAATTGCAGCGATTCTAGAACCAGCTGAGGATACAATTGAGGGCGCTGGTGGAGACACATTGGCGGAAAGTGACGATGAGAACTCTTTGGACAATGAGGGCGCTGAAGACTCCACAAACGGTGAGAAGCTGCAACTGGAACTTCAAAGCTTGAATAAGAAAGGAATGCAAGTGCAGTTGGATTTGAAGGCCGTGGAAAAGTCGAGCGCCAAGAAATCCGGTGGCAGAGGAAGAGGAGGTGGTTCCCAGGCGTCAGAGAAGAAAGGTGGGCGAGGTTCAGGATCTGCCACGAAGAGGAAAAGATGA | 3108 | 43.56 | MSLEFHSVKNCHVDSNFSTLPKASGGNLSRGLLFSLGQWCFCILHSAVDFTMPDIRKWFMKPHDKDNGSASKQAKPAPSNLEKPASAELQSGKTGVSGGESTGRRITSKYFASEKQKSKDTKETEELPNKRKSPQDAKESPAKRKSPQDAKESPAKRKSQKDSEESPKARALKKSNKIGDNDDDDVFTSSRKNLSDVTPNKKLKSGSGKGIPQKPVETEESDDEETKVTEPSLKPSGRGRGGRGSSAATVGGRDRGGGRGGFMNFGERKDPPHKGEKEVPEGAPDCLAGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSVSKKTNYLLCDEDIGGRKSSKAKELGTGFLTEDGLLDMIRASGTKAPPRHDTKKSLVKSVESPTENISQKVQAKTRKDLTAGASPAKQKSRTVESSSLTWTEKYRPKVPNDIIGNQSLVKQLHDWLAHWNENFLDGGSKKKGKKLNDSGAKKAVLLCGGPGIGKTTSAKLVSKMLGYEAIEVNASDNRGKADAKIQKGISGSNANSIKELISNESLHFKMDRPKHPKTVLIMDEVDGMSAGDRGGVADLIASIKISKIPIICICNDRYSQKLKSLVNYCLILSYRKPTKQQMAKRLIQVANAEGLQVNEIALEELAERVNGDMRMALNQLQYLSLSMSVIKYDDIRQRLMSSMKDEDISPFTAVDKLFGFNSGKLRMDERIDLSMSDLDLVPLLIQENYVNYRPSSVSKDESGIKRMDLIARAAESIADGDIINVQIRRHRQWQLSQSSSIASCVIPASLLHGQRETLEQGERNFNRFSGWLGKNSTFGKNMRLLEDLHVHILASRESCSGREHIRVENLTLFLKRLTEPLHTLPKDEAVKMVVEFMSLYSISQEDYDTVVELSKFQGRKNPLEGVAPAVKAALTKAYKEVSKTHMVRAADLITLPGMKKAPKKRIAAILEPAEDTIEGAGGDTLAESDDENSLDNEGAEDSTNGEKLQLELQSLNKKGMQVQLDLKAVEKSSAKKSGGRGRGGGSQASEKKGGRGSGSATKRKR | 1035 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
9 | 45641661 | 45654985 | + | Lag0010234.1 | Lac9g2747 | 621673 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lac9g2747 | 1035 | Gene3D | - | 679 | 789 | - | - | |
Lac9g2747 | 1035 | PANTHER | CHROMOSOME TRANSMISSION FIDELITY FACTOR 18 | 126 | 1004 | - | GO:0003677(PANTHER)|GO:0005634(PANTHER) | |
Lac9g2747 | 1035 | MobiDBLite | consensus disorder prediction | 266 | 281 | - | - | |
Lac9g2747 | 1035 | MobiDBLite | consensus disorder prediction | 405 | 419 | - | - | |
Lac9g2747 | 1035 | SMART | BRCT_7 | 284 | 362 | IPR001357 | - | |
Lac9g2747 | 1035 | Gene3D | BRCT domain | 259 | 361 | IPR036420 | - | |
Lac9g2747 | 1035 | MobiDBLite | consensus disorder prediction | 947 | 977 | - | - | |
Lac9g2747 | 1035 | SMART | AAA_5 | 470 | 608 | IPR003593 | GO:0016887(InterPro) | |
Lac9g2747 | 1035 | MobiDBLite | consensus disorder prediction | 379 | 395 | - | - | |
Lac9g2747 | 1035 | SUPERFAMILY | post-AAA+ oligomerization domain-like | 678 | 823 | IPR008921 | GO:0003677(InterPro)|GO:0006260(InterPro) | |
Lac9g2747 | 1035 | ProSiteProfiles | BRCT domain profile. | 282 | 360 | IPR001357 | - | |
Lac9g2747 | 1035 | MobiDBLite | consensus disorder prediction | 110 | 190 | - | - | |
Lac9g2747 | 1035 | Gene3D | - | 418 | 606 | IPR027417 | - | |
Lac9g2747 | 1035 | MobiDBLite | consensus disorder prediction | 993 | 1035 | - | - | |
Lac9g2747 | 1035 | Pfam | BRCA1 C Terminus (BRCT) domain | 284 | 359 | IPR001357 | - | |
Lac9g2747 | 1035 | MobiDBLite | consensus disorder prediction | 63 | 283 | - | - | |
Lac9g2747 | 1035 | SUPERFAMILY | BRCT domain | 282 | 361 | IPR036420 | - | |
Lac9g2747 | 1035 | CDD | HLD_clamp_RFC | 607 | 665 | IPR047854 | - | |
Lac9g2747 | 1035 | Pfam | ATPase family associated with various cellular activities (AAA) | 474 | 586 | IPR003959 | GO:0005524(InterPro)|GO:0016887(InterPro) | |
Lac9g2747 | 1035 | MobiDBLite | consensus disorder prediction | 362 | 419 | - | - | |
Lac9g2747 | 1035 | FunFam | Replication factor C subunit 1 | 679 | 788 | - | - | |
Lac9g2747 | 1035 | CDD | BRCT_RFC1 | 282 | 360 | - | - | |
Lac9g2747 | 1035 | MobiDBLite | consensus disorder prediction | 364 | 378 | - | - | |
Lac9g2747 | 1035 | CDD | AAA | 467 | 570 | - | - | |
Lac9g2747 | 1035 | MobiDBLite | consensus disorder prediction | 84 | 109 | - | - | |
Lac9g2747 | 1035 | FunFam | Replication factor C subunit 1 | 607 | 678 | - | - | |
Lac9g2747 | 1035 | FunFam | Replication factor C subunit 1 | 258 | 361 | - | - | |
Lac9g2747 | 1035 | Pfam | Replication factor RFC1 C terminal domain | 747 | 909 | IPR013725 | GO:0003689(InterPro)|GO:0005524(InterPro)|GO:0005663(InterPro)|GO:0006260(InterPro) | |
Lac9g2747 | 1035 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 418 | 667 | IPR027417 | - | |
Lac9g2747 | 1035 | FunFam | Replication factor C subunit 1 | 418 | 606 | - | - | |
Lac9g2747 | 1035 | MobiDBLite | consensus disorder prediction | 215 | 231 | - | - | |
Lac9g2747 | 1035 | Gene3D | - | 607 | 677 | - | - | |
Lac9g2747 | 1035 | PIRSF | RFC1 | 51 | 1011 | IPR012178 | GO:0003689(InterPro)|GO:0005524(InterPro)|GO:0005663(InterPro)|GO:0006260(InterPro)|GO:0006281(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lac12g1394 | Lac-Chr12:23379581 | Lac9g2747 | Lac-Chr9:45641661 | 9.70E-56 | dispersed | |
Lac3g2882 | Lac-Chr3:46070464 | Lac9g2747 | Lac-Chr9:45641661 | 2.00E-48 | dispersed | |
Lac4g0414 | Lac-Chr4:9564377 | Lac9g2747 | Lac-Chr9:45641661 | 9.80E-55 | dispersed | |
Lac7g0477 | Lac-Chr7:3797400 | Lac9g2747 | Lac-Chr9:45641661 | 4.40E-21 | dispersed | |
Lac9g2747 | Lac-Chr9:45641661 | Lac1g1062 | Lac-Chr1:27587512 | 1.20E-96 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lac9g2747 | K10754 | - | csv:101204361 | 1625.53 |