Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac9g2754 ATGGCGGCTCGAGCTGTTGTTCCTCAGCGACAACTACGAATCAGAGGTGAAGGTAAGCCGAAGATGGTAGCGGCTGAAGGAAGAACAAGGCGAGTTCTTCAAGATATAGGCAATCTGGTGCCTGATCGAGCCGCAGTAGAAGGGAAACCTGGACCTCAACCTGCCGAGAAGAACAAGAGAGCAATCACCCAAAAGCTGGATGGGGGAGTAGACAAGGGAGGCGATGTGACGAAGGCTGCAATAACTGAGAAGTGCAAAGCTGAGAAACCTAAGACTGTACTCAGCTCTGCCGACAAGAGACATATAATCAACATCAGCGACAGTAAATCAAGGGATAAGAATAAGAGGACTCTGACTTCAACCCTTAGTGCCAGAAGCAAGGCTGCTTGTGGACTCACCAATAATCCACTGGATTCAGTAGCTAACATTGATGAAGCAGATGCTAACAATGAATTGGCAGTAGTTGAATACATCGACGACATGTACAAGTTTTACAAGCTTGCAGAAGATGAGAGCCGAGTATCAGATTACATGGGATCACAGCCAGATTTGAATGCTAAGATGAGATCCATCCTCATAGATTGGTTGATAGAAGTTCATCGCAAGTTCGAACTGATGCCAGAAACCCTTTACCTCGCTGTAAACATTGTAGACCGATTCCTTTCCTTGAAGACTGTACCAAGGAGGGAACTTCAATTGGTAGGTATCAGCTCTATGCTGATAGCATGCAAATATGAAGAGATTTGGGCCCCAGAGGTCAATGACTTTGTGAGTATATCTGCAAATACTTATCAGAGAGAACAGATTTTGGTGATGGAGAAAGTAATCTTGGGCAGGCTAGAATGGCTTCTAACAGTTCCTACACCTTACGTTTTTCTTGTTCGATATGTAAAGGCTTCCGAACCGTCTGATGAGGAGATGGAGCACATGGTCTTTTTTCTGGCTGAGCTTGGTCTGATGAACTATCCCATAACAATATCATACAGCCCTTCAGCGATTGCTTCAGCGGCTGTTTATGCTGCACGATGCACACTTGAAAAGAGCCCTCTCTGGACAGCAACTTTGCAACACCATACAGGCTACGTTGAAGATGAGTTGAAGGAATGTGCAGAACTTCTTGTGAACTTGCACCGTGGAGCTGTAGATTGCAAGCTCAAGGCTGTGTATAGAAAGTATACGAGTCCGGATCGCAGTGCAGTTGCTCTTTTTCCTCCAGCTAAAAGTCTAACTCCAGATCGTAGTACAGATGCATGA 1254 45.37 MAARAVVPQRQLRIRGEGKPKMVAAEGRTRRVLQDIGNLVPDRAAVEGKPGPQPAEKNKRAITQKLDGGVDKGGDVTKAAITEKCKAEKPKTVLSSADKRHIINISDSKSRDKNKRTLTSTLSARSKAACGLTNNPLDSVANIDEADANNELAVVEYIDDMYKFYKLAEDESRVSDYMGSQPDLNAKMRSILIDWLIEVHRKFELMPETLYLAVNIVDRFLSLKTVPRRELQLVGISSMLIACKYEEIWAPEVNDFVSISANTYQREQILVMEKVILGRLEWLLTVPTPYVFLVRYVKASEPSDEEMEHMVFFLAELGLMNYPITISYSPSAIASAAVYAARCTLEKSPLWTATLQHHTGYVEDELKECAELLVNLHRGAVDCKLKAVYRKYTSPDRSAVALFPPAKSLTPDRSTDA 417
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 45728656 45731115 + Lag0010241.1 Lac9g2754 621680
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac9g2754 417 Gene3D - 174 285 - -
Lac9g2754 417 FunFam G2/mitotic-specific cyclin 173 281 - -
Lac9g2754 417 SUPERFAMILY Cyclin-like 149 282 IPR036915 -
Lac9g2754 417 Pfam Cyclin, N-terminal domain 160 284 IPR006671 -
Lac9g2754 417 SMART cyclin_7 291 375 IPR013763 -
Lac9g2754 417 SMART cyclin_7 194 278 IPR013763 -
Lac9g2754 417 CDD CYCLIN_AtCycB-like_rpt1 138 282 - -
Lac9g2754 417 ProSitePatterns Cyclins signature. 189 220 IPR048258 -
Lac9g2754 417 Pfam Cyclin, C-terminal domain 287 405 IPR004367 -
Lac9g2754 417 FunFam G2/mitotic-specific cyclin-1 282 401 - -
Lac9g2754 417 SUPERFAMILY Cyclin-like 288 409 IPR036915 -
Lac9g2754 417 Gene3D - 160 401 - -
Lac9g2754 417 SMART Cyclin_C_2 287 406 IPR004367 -
Lac9g2754 417 PANTHER CYCLINS 141 393 IPR039361 GO:0000079(PANTHER)|GO:0000307(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0016538(PANTHER)|GO:0044772(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac12g0033 Lac-Chr12:483460 Lac9g2754 Lac-Chr9:45728656 7.20E-62 dispersed
Lac1g1551 Lac-Chr1:36801481 Lac9g2754 Lac-Chr9:45728656 2.80E-111 dispersed
Lac2g0092 Lac-Chr2:703334 Lac9g2754 Lac-Chr9:45728656 4.80E-65 dispersed
Lac8g1821 Lac-Chr8:36495788 Lac9g2754 Lac-Chr9:45728656 7.80E-46 dispersed
Lac9g2754 Lac-Chr9:45728656 Lac2g0633 Lac-Chr2:4734814 3.20E-45 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac9g2754 K21777 - csv:101222873 678.322