Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac9g2815 ATGCAGTCAAAGTCTAAAAGTGTGAATCGACTAGAATCTGAACCACCAAATATGCAGCAGACGAGTAATTATTCTGAGCCTTGGTGGCGTAGTATTGGGTACAATCCTATCTCCCCGCCAGCAGCAGGAGGAAATGTGTCCAATTCACCATCACTGGAATGCACTAATGGTGCTTCAGAATCTAATGATGGTCAGTCAATGTCGAATGATGATTTGAATGAAGATGATGATGACGACACCACAAAAGATTCACAAGCTGCAAGTTATGGGCAAGGACAGCAGAATAATCAGCATGCTGTCTCTACTGCACCTACAGTGCATGGTGGATGTATCACACAACCTCCTCAGCTTGAACTTGTAGGCCACTCTATTGCATGTGCACCAAATCCATATCAGGATCCTTATTATGCTGGAGTGATGGCTGCCTATGGGCATCAACCTATGGGTTACCCTCCTTTTCTTGGGATGCCACATGCTAGAATGGCTTTGCCCCTTGAGGTGACACAGGAACCAGTTTTTGTGAATGCCAAGCAATATCAAGGGATTCTAAGGCGAAGACAAGCACGTGCTAAAGCAGAGGTTGAGAACAAACTGATAAAAGTTAGAAAGCCATATCTTCATGAATCTCGGCACCAGCATGCCATGAGACGGGCAAGGGGTAGTGGAGGACGCTTTGCCAAGAAAAATGAAGTTAACTCTTCGAGCTCTACTATGAAGGATAAGGAATCCGGTTCTGGTCAAGCTATCTCGTCGCAGTCTGCTAGTTCATCTGGTTCTGAAGCTGTGCCTGGTGCCTTGGCTGAAACCTGGAATTCCTCCCATGGTCAACAAGAAGCAAGGGCCCAGTTGCATGAGGCATATGAAGCTCGTAGTTATGTGAATGGCAGTAGCCATTTTCATAATTACAGTGGCTTCCAAGCTTCATCATATGCTTTGCGCTCTGGTGAGAGAGGTGAAGATGGAGACTGTTCGGGACAGCAACGAGGAAGTATCTCAGATAATCAGGCGGCACAGAGGCGTCTTGCCATCAAGTGA 1035 46.47 MQSKSKSVNRLESEPPNMQQTSNYSEPWWRSIGYNPISPPAAGGNVSNSPSLECTNGASESNDGQSMSNDDLNEDDDDDTTKDSQAASYGQGQQNNQHAVSTAPTVHGGCITQPPQLELVGHSIACAPNPYQDPYYAGVMAAYGHQPMGYPPFLGMPHARMALPLEVTQEPVFVNAKQYQGILRRRQARAKAEVENKLIKVRKPYLHESRHQHAMRRARGSGGRFAKKNEVNSSSSTMKDKESGSGQAISSQSASSSGSEAVPGALAETWNSSHGQQEARAQLHEAYEARSYVNGSSHFHNYSGFQASSYALRSGERGEDGDCSGQQRGSISDNQAAQRRLAIK 344
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 46204186 46207104 - Lag0010302.1 Lac9g2815 621741
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac9g2815 344 PRINTS CCAAT-binding transcription factor subunit B signature 171 193 IPR001289 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac9g2815 344 PRINTS CCAAT-binding transcription factor subunit B signature 202 225 IPR001289 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac9g2815 344 ProSiteProfiles NF-YA/HAP2 family profile. 168 228 IPR001289 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac9g2815 344 MobiDBLite consensus disorder prediction 313 344 - -
Lac9g2815 344 SMART cbf3 167 228 IPR001289 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac9g2815 344 MobiDBLite consensus disorder prediction 1 107 - -
Lac9g2815 344 Gene3D - 168 230 - -
Lac9g2815 344 MobiDBLite consensus disorder prediction 1 29 - -
Lac9g2815 344 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 20 284 IPR001289 GO:0000981(PANTHER)|GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0006357(PANTHER)
Lac9g2815 344 MobiDBLite consensus disorder prediction 227 262 - -
Lac9g2815 344 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 170 225 IPR001289 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac9g2815 344 MobiDBLite consensus disorder prediction 206 222 - -
Lac9g2815 344 MobiDBLite consensus disorder prediction 84 107 - -
Lac9g2815 344 MobiDBLite consensus disorder prediction 204 263 - -
Lac9g2815 344 ProSitePatterns NF-YA/HAP2 subunit signature. 173 193 IPR018362 GO:0003677(InterPro)|GO:0016602(InterPro)
Lac9g2815 344 MobiDBLite consensus disorder prediction 41 68 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac1g1199 Lac-Chr1:30944003 Lac9g2815 Lac-Chr9:46204186 1.00E-28 dispersed
Lac6g3088 Lac-Chr6:48399045 Lac9g2815 Lac-Chr9:46204186 5.60E-25 dispersed
Lac1g3582 Lac-Chr1:55052434 Lac9g2815 Lac-Chr9:46204186 1.60E-28 transposed
Lac3g1358 Lac-Chr3:12001465 Lac9g2815 Lac-Chr9:46204186 2.80E-82 wgd
Lac4g2653 Lac-Chr4:45495004 Lac9g2815 Lac-Chr9:46204186 5.90E-44 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
24530 PF02045 CBFB_NFYA 1.90E-26 No_clan Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac9g2815 K08064 - csv:101212961 571.237