Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac9g2815 ATGCAGTCAAAGTCTAAAAGTGTGAATCGACTAGAATCTGAACCACCAAATATGCAGCAGACGAGTAATTATTCTGAGCCTTGGTGGCGTAGTATTGGGTACAATCCTATCTCCCCGCCAGCAGCAGGAGGAAATGTGTCCAATTCACCATCACTGGAATGCACTAATGGTGCTTCAGAATCTAATGATGGTCAGTCAATGTCGAATGATGATTTGAATGAAGATGATGATGACGACACCACAAAAGATTCACAAGCTGCAAGTTATGGGCAAGGACAGCAGAATAATCAGCATGCTGTCTCTACTGCACCTACAGTGCATGGTGGATGTATCACACAACCTCCTCAGCTTGAACTTGTAGGCCACTCTATTGCATGTGCACCAAATCCATATCAGGATCCTTATTATGCTGGAGTGATGGCTGCCTATGGGCATCAACCTATGGGTTACCCTCCTTTTCTTGGGATGCCACATGCTAGAATGGCTTTGCCCCTTGAGGTGACACAGGAACCAGTTTTTGTGAATGCCAAGCAATATCAAGGGATTCTAAGGCGAAGACAAGCACGTGCTAAAGCAGAGGTTGAGAACAAACTGATAAAAGTTAGAAAGCCATATCTTCATGAATCTCGGCACCAGCATGCCATGAGACGGGCAAGGGGTAGTGGAGGACGCTTTGCCAAGAAAAATGAAGTTAACTCTTCGAGCTCTACTATGAAGGATAAGGAATCCGGTTCTGGTCAAGCTATCTCGTCGCAGTCTGCTAGTTCATCTGGTTCTGAAGCTGTGCCTGGTGCCTTGGCTGAAACCTGGAATTCCTCCCATGGTCAACAAGAAGCAAGGGCCCAGTTGCATGAGGCATATGAAGCTCGTAGTTATGTGAATGGCAGTAGCCATTTTCATAATTACAGTGGCTTCCAAGCTTCATCATATGCTTTGCGCTCTGGTGAGAGAGGTGAAGATGGAGACTGTTCGGGACAGCAACGAGGAAGTATCTCAGATAATCAGGCGGCACAGAGGCGTCTTGCCATCAAGTGA 1035 46.47 MQSKSKSVNRLESEPPNMQQTSNYSEPWWRSIGYNPISPPAAGGNVSNSPSLECTNGASESNDGQSMSNDDLNEDDDDDTTKDSQAASYGQGQQNNQHAVSTAPTVHGGCITQPPQLELVGHSIACAPNPYQDPYYAGVMAAYGHQPMGYPPFLGMPHARMALPLEVTQEPVFVNAKQYQGILRRRQARAKAEVENKLIKVRKPYLHESRHQHAMRRARGSGGRFAKKNEVNSSSSTMKDKESGSGQAISSQSASSSGSEAVPGALAETWNSSHGQQEARAQLHEAYEARSYVNGSSHFHNYSGFQASSYALRSGERGEDGDCSGQQRGSISDNQAAQRRLAIK 344
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 46204186 46207104 - Lag0010302.1 Lac9g2815 621741

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lac9g2815 344 PRINTS CCAAT-binding transcription factor subunit B signature 171 193 IPR001289 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac9g2815 344 PRINTS CCAAT-binding transcription factor subunit B signature 202 225 IPR001289 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac9g2815 344 ProSiteProfiles NF-YA/HAP2 family profile. 168 228 IPR001289 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac9g2815 344 MobiDBLite consensus disorder prediction 313 344 - -
Lac9g2815 344 SMART cbf3 167 228 IPR001289 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac9g2815 344 MobiDBLite consensus disorder prediction 1 107 - -
Lac9g2815 344 Gene3D - 168 230 - -
Lac9g2815 344 MobiDBLite consensus disorder prediction 1 29 - -
Lac9g2815 344 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 20 284 IPR001289 GO:0000981(PANTHER)|GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0006357(PANTHER)
Lac9g2815 344 MobiDBLite consensus disorder prediction 227 262 - -
Lac9g2815 344 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 170 225 IPR001289 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac9g2815 344 MobiDBLite consensus disorder prediction 206 222 - -
Lac9g2815 344 MobiDBLite consensus disorder prediction 84 107 - -
Lac9g2815 344 MobiDBLite consensus disorder prediction 204 263 - -
Lac9g2815 344 ProSitePatterns NF-YA/HAP2 subunit signature. 173 193 IPR018362 GO:0003677(InterPro)|GO:0016602(InterPro)
Lac9g2815 344 MobiDBLite consensus disorder prediction 41 68 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac9g2815 K08064 - - csv:101212961 571.237
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac1g1199 Lac-Chr1:30944003 Lac9g2815 Lac-Chr9:46204186 1.00E-28 dispersed
Lac6g3088 Lac-Chr6:48399045 Lac9g2815 Lac-Chr9:46204186 5.60E-25 dispersed
Lac1g3582 Lac-Chr1:55052434 Lac9g2815 Lac-Chr9:46204186 1.60E-28 transposed
Lac3g1358 Lac-Chr3:12001465 Lac9g2815 Lac-Chr9:46204186 2.80E-82 wgd
Lac4g2653 Lac-Chr4:45495004 Lac9g2815 Lac-Chr9:46204186 5.90E-44 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lac9g2815 . 18 273 CCAAT-HAP2 Transcription Factor Family AT5G12840 53.8 2.3e-60 229.9
Lac3g1358 . 1 233 CCAAT-HAP2 Transcription Factor Family AT3G20910 52.9 1.9e-47 187.2
Lac1g3582 . 92 237 CCAAT-HAP2 Transcription Factor Family AT2G34720 55.4 1.1e-36 150.6
Lac1g3582 . 35 237 CCAAT-HAP2 Transcription Factor Family AT1G30500 54.2 1.3e-49 193.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001124 3 6 3 3 3 2 4 2 1 2 2 2 3 2 2 4 2 4 4 2 2 2 2 2 2 2 2 6 2 1 79
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
24530 PF02045 CBFB_NFYA 1.90E-26 No_clan Lac TF