Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lac9g2839 | ATGAGTGATCCTTACTCCATCAATGGCTCTTTTGGTTTATACCACTGCTTCTCTTCTTCTAATTCTTACTCTCCTTATGATCTCTTCTCTTTTTCTTACAACAATAATCATAACAACAATACAACAACTCATGAATTGTTCTCTCCTCCTTCTTCTTCATCATCTCCTCAAATCCTTCCCCTTTTAAGCTTAAGCCCTGCAAGACATGAAGAGGATCACTCATTTTCAAACAACAACAAGAAGTTGTTGTGTAGCCCTTGTGAAGATCATGATGAGACTGTTACTGTTGCTTTGCATTTAGGGCTTCCAACTCCAACACCTCCTTCTTCTTCTTCCTCTTCTGATCTGATTTTGAGGCTTTCTTCAACTGAGATCTCAGATAAAGAAGATCAATTGGAAGAAGCTGTTCCTCTTCCTGTTGTTGTTCCTAATTACTACTCTTCTTCTTCCTCATCTTCCACTGCCACTGCTGGACTCAACAAAGGTCAGTATTGGATTCCAACTCCTGCCCAGATTCTCATTGGTCCAACTCAGTTCTCTTGCCCTCTTTGCTTCAAGACCTTCAACAGATACAACAACATGCAGATGCATATGTGGGGGCATGGATCTCAATACAGAAAAGGGCCACAGTCACTAAGAGGAACACAACCAACAGCCATGCTAAGGCTCCCATGCTACTGCTGTGCCCCAGGGTGCAGAAACAACATAGACCATCCAAGGTCAAAGCCACTGAAAGACTTCAGAACCCTTCAAACACATTACAAAAGGAAGCATGGAATCAAGCCATTTACGTGTAGAAAGTGTGGGAAAGCGTTTGCTGTGAGAGGGGATTGGAGAACTCACGAGAAGAATTGTGGGAAGCTTTGGCATTGCACTTGTGGCTCTGATTTTAAGCACAAAAGGTCTCTCAAAGATCACATCAAAGCCTTTGGACATGGCCATGCAGCTTACGGGATTGACTCTTTTGATGAAGATGATGAACCAGCTTCTGAGATTGAACATGATAATGACTTGTCTCTCAGTAATGGAGATTCATAG | 1038 | 42.39 | MSDPYSINGSFGLYHCFSSSNSYSPYDLFSFSYNNNHNNNTTTHELFSPPSSSSSPQILPLLSLSPARHEEDHSFSNNNKKLLCSPCEDHDETVTVALHLGLPTPTPPSSSSSSDLILRLSSTEISDKEDQLEEAVPLPVVVPNYYSSSSSSSTATAGLNKGQYWIPTPAQILIGPTQFSCPLCFKTFNRYNNMQMHMWGHGSQYRKGPQSLRGTQPTAMLRLPCYCCAPGCRNNIDHPRSKPLKDFRTLQTHYKRKHGIKPFTCRKCGKAFAVRGDWRTHEKNCGKLWHCTCGSDFKHKRSLKDHIKAFGHGHAAYGIDSFDEDDEPASEIEHDNDLSLSNGDS | 345 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
9 | 46386195 | 46388770 | + | Lag0010326.1 | Lac9g2839 | 621765 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lac9g2839 | 345 | PANTHER | ZINC FINGER PROTEIN WIP2 | 31 | 337 | IPR043584 | GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0010468(PANTHER)|GO:0010468(InterPro)|GO:0048856(PANTHER) | |
Lac9g2839 | 345 | SMART | c2h2final6 | 179 | 201 | IPR013087 | - | |
Lac9g2839 | 345 | SMART | c2h2final6 | 289 | 312 | IPR013087 | - | |
Lac9g2839 | 345 | SMART | c2h2final6 | 263 | 283 | IPR013087 | - | |
Lac9g2839 | 345 | Gene3D | Classic Zinc Finger | 240 | 317 | - | - | |
Lac9g2839 | 345 | Gene3D | Classic Zinc Finger | 178 | 201 | - | - | |
Lac9g2839 | 345 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 179 | 206 | IPR013087 | - | |
Lac9g2839 | 345 | Pfam | BIRD-IDD transcription factor, third C2HC zinc finger | 262 | 286 | - | - | |
Lac9g2839 | 345 | Pfam | Zinc finger, C2H2 type | 179 | 198 | IPR013087 | - | |
Lac9g2839 | 345 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 181 | 201 | IPR013087 | - | |
Lac9g2839 | 345 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 263 | 290 | IPR013087 | - | |
Lac9g2839 | 345 | FunFam | Zinc finger protein WIP2 | 232 | 314 | - | - | |
Lac9g2839 | 345 | SUPERFAMILY | beta-beta-alpha zinc fingers | 244 | 283 | IPR036236 | - | |
Lac9g2839 | 345 | MobiDBLite | consensus disorder prediction | 324 | 345 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lac10g1892 | Lac-Chr10:24450457 | Lac9g2839 | Lac-Chr9:46386195 | 8.60E-49 | dispersed | |
Lac10g2530 | Lac-Chr10:39175847 | Lac9g2839 | Lac-Chr9:46386195 | 3.30E-98 | dispersed | |
Lac1g1026 | Lac-Chr1:26933773 | Lac9g2839 | Lac-Chr9:46386195 | 3.20E-54 | dispersed | |
Lac8g1295 | Lac-Chr8:28218300 | Lac9g2839 | Lac-Chr9:46386195 | 5.80E-86 | dispersed | |
Lac4g2662 | Lac-Chr4:45626190 | Lac9g2839 | Lac-Chr9:46386195 | 2.00E-97 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
24533 | None | None | None | None | Lac | TF |
Pathway information
