Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac9g2839 ATGAGTGATCCTTACTCCATCAATGGCTCTTTTGGTTTATACCACTGCTTCTCTTCTTCTAATTCTTACTCTCCTTATGATCTCTTCTCTTTTTCTTACAACAATAATCATAACAACAATACAACAACTCATGAATTGTTCTCTCCTCCTTCTTCTTCATCATCTCCTCAAATCCTTCCCCTTTTAAGCTTAAGCCCTGCAAGACATGAAGAGGATCACTCATTTTCAAACAACAACAAGAAGTTGTTGTGTAGCCCTTGTGAAGATCATGATGAGACTGTTACTGTTGCTTTGCATTTAGGGCTTCCAACTCCAACACCTCCTTCTTCTTCTTCCTCTTCTGATCTGATTTTGAGGCTTTCTTCAACTGAGATCTCAGATAAAGAAGATCAATTGGAAGAAGCTGTTCCTCTTCCTGTTGTTGTTCCTAATTACTACTCTTCTTCTTCCTCATCTTCCACTGCCACTGCTGGACTCAACAAAGGTCAGTATTGGATTCCAACTCCTGCCCAGATTCTCATTGGTCCAACTCAGTTCTCTTGCCCTCTTTGCTTCAAGACCTTCAACAGATACAACAACATGCAGATGCATATGTGGGGGCATGGATCTCAATACAGAAAAGGGCCACAGTCACTAAGAGGAACACAACCAACAGCCATGCTAAGGCTCCCATGCTACTGCTGTGCCCCAGGGTGCAGAAACAACATAGACCATCCAAGGTCAAAGCCACTGAAAGACTTCAGAACCCTTCAAACACATTACAAAAGGAAGCATGGAATCAAGCCATTTACGTGTAGAAAGTGTGGGAAAGCGTTTGCTGTGAGAGGGGATTGGAGAACTCACGAGAAGAATTGTGGGAAGCTTTGGCATTGCACTTGTGGCTCTGATTTTAAGCACAAAAGGTCTCTCAAAGATCACATCAAAGCCTTTGGACATGGCCATGCAGCTTACGGGATTGACTCTTTTGATGAAGATGATGAACCAGCTTCTGAGATTGAACATGATAATGACTTGTCTCTCAGTAATGGAGATTCATAG 1038 42.39 MSDPYSINGSFGLYHCFSSSNSYSPYDLFSFSYNNNHNNNTTTHELFSPPSSSSSPQILPLLSLSPARHEEDHSFSNNNKKLLCSPCEDHDETVTVALHLGLPTPTPPSSSSSSDLILRLSSTEISDKEDQLEEAVPLPVVVPNYYSSSSSSSTATAGLNKGQYWIPTPAQILIGPTQFSCPLCFKTFNRYNNMQMHMWGHGSQYRKGPQSLRGTQPTAMLRLPCYCCAPGCRNNIDHPRSKPLKDFRTLQTHYKRKHGIKPFTCRKCGKAFAVRGDWRTHEKNCGKLWHCTCGSDFKHKRSLKDHIKAFGHGHAAYGIDSFDEDDEPASEIEHDNDLSLSNGDS 345
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 46386195 46388770 + Lag0010326.1 Lac9g2839 621765
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac9g2839 345 PANTHER ZINC FINGER PROTEIN WIP2 31 337 IPR043584 GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0010468(PANTHER)|GO:0010468(InterPro)|GO:0048856(PANTHER)
Lac9g2839 345 SMART c2h2final6 179 201 IPR013087 -
Lac9g2839 345 SMART c2h2final6 289 312 IPR013087 -
Lac9g2839 345 SMART c2h2final6 263 283 IPR013087 -
Lac9g2839 345 Gene3D Classic Zinc Finger 240 317 - -
Lac9g2839 345 Gene3D Classic Zinc Finger 178 201 - -
Lac9g2839 345 ProSiteProfiles Zinc finger C2H2 type domain profile. 179 206 IPR013087 -
Lac9g2839 345 Pfam BIRD-IDD transcription factor, third C2HC zinc finger 262 286 - -
Lac9g2839 345 Pfam Zinc finger, C2H2 type 179 198 IPR013087 -
Lac9g2839 345 ProSitePatterns Zinc finger C2H2 type domain signature. 181 201 IPR013087 -
Lac9g2839 345 ProSiteProfiles Zinc finger C2H2 type domain profile. 263 290 IPR013087 -
Lac9g2839 345 FunFam Zinc finger protein WIP2 232 314 - -
Lac9g2839 345 SUPERFAMILY beta-beta-alpha zinc fingers 244 283 IPR036236 -
Lac9g2839 345 MobiDBLite consensus disorder prediction 324 345 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac10g1892 Lac-Chr10:24450457 Lac9g2839 Lac-Chr9:46386195 8.60E-49 dispersed
Lac10g2530 Lac-Chr10:39175847 Lac9g2839 Lac-Chr9:46386195 3.30E-98 dispersed
Lac1g1026 Lac-Chr1:26933773 Lac9g2839 Lac-Chr9:46386195 3.20E-54 dispersed
Lac8g1295 Lac-Chr8:28218300 Lac9g2839 Lac-Chr9:46386195 5.80E-86 dispersed
Lac4g2662 Lac-Chr4:45626190 Lac9g2839 Lac-Chr9:46386195 2.00E-97 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
24533 None None None None Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac9g2839 - - - 0.0