Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac9g2842 ATGGGATCCATGAATTCAAACAATTGGCTTTCATTTCCACTTTCACCCACAAATCCTTCTTTACCACCACATCTTCAAACAACAACTCAATCCCACCACTTCTCTTTGGGCAATTTGGAGAATGATAATATGGACATCCCATTTCAAACCCATGAGTGGAATCTGATAAGTAGCCAAAGCGGTGGTGAAGTTCCAAAAGTTGCAGACTTTTTAGGAGTAAGCAAGGCAGAAAATGAGACAGATCTCATTGGGTTTAATGAAATTCATCAGGGTAATGATACAGACTACTTGTTTCCAATCACAAGATTGGTTCCTGTTCAACAAGCCACACCAGCCATAAATGTGGACTCTACCACTAACTATGACCTCCAAGACAATTCAAATAGCTTGCAGTCTTTGACCCTTTCAATGGGCAGTGGCAAGGGCTCAACTTGTGAAACCACCACCCCTGATAATACCTCCAATACCACTGTTGATGTCACTCCTAGAAGAACTTTGGACACTTTTGGCCAAAGAACCTCAATTTATCGCGGTGTCACCCGACATCGATGGACGGGTAGATATGAAGCACATTTGTGGGATAATAGTTGCAGGAGGGAAGGGCAGTCGAGGAAGGGTCGGCAAGGTGGATATGACAAAGAAGAGAAAGCAGCTAGGGCTTATGATCTTGCTGCATTGAAGTACTGGGGCACATCCACCACCACAAACTTTCCTATTAGTAACTACGAGAAGGAAGTGGAGGAAATGAAGCACATGACGAGACAAGAATTTGTGGCTGCCATTAGAAGGAAGAGTAGTGGGTTTTCAAGGGGAGCATCAATGTATCGAGGAGTTACAAGGCATCACCAGCATGGAAGATGGCAGGCGAGGATTGGAAGAGTTGCTGGAAACAAAGATCTTTATTTGGGAACTTTCAGTACGGAAGAGGAAGCAGCAGAAGCATACGACATAGCGGCGATAAAATTCAGAGGGCTAAACGCAGTGACAAACTTCGACATGAGCCGCTACGACGTGAAAAGCATATTAGAGAGCAACACGCTTCCGATCGGCGGCGGTGCAGCCAAACGGCTGAAGGAGGCTCAAGCCATCGAATCCTCTCGAAAGCGCGACGAAATGATCGCCCTTGGCTCCTCTTCCTCGTTCCAATACGGCAGCTCCTCAACGAATTCCTCGAATCACAGGCTTCAACAGCCCAATTACCCTTTACTCCAACAGCAACAGCCACAACCCAATCTGAATCTCGACCACCACAACCTTCAAACCCAGCCTTTGCTCTCTCTTCAAAACCACCACGACATTTCTCACTACACCCACGATCCGGCGTCGTTTCATCACTCTTCTTACATGCACACCCACCTCCAGCTCCACCACCACCAATCTGATTCCCCTTACGGTAGCAACAACCATCAATTCTACGGCGGCGGTGGTGGTGGCGGTGGGTATCTTCATAATCATCCGGCTTTACTTCATGGGATGATCAACATGGGCGGAGGAGGAGGAGGAGGGTCTAATTTGGAGACTAATAACAGCAATGCGAATAGTTTTAATAATCCGAATAGTAATACTAATGGAGGGTATCTTGGAAATGCCTTTGGGATGGGGTCTACCTCGTCCGCGGCGAACGGCGGCGCTCCGGCGGAGGAGTACGCTCTTGTTAAGGTTGATTATGATATGCCTAATTCTGGTGGGTATGGGGGCTGGTCTGGCGATTCGGTTCAGGGTTCTAACAATGGGGTTTTCTCTATGTGGAATGATTGA 1758 47.27 MGSMNSNNWLSFPLSPTNPSLPPHLQTTTQSHHFSLGNLENDNMDIPFQTHEWNLISSQSGGEVPKVADFLGVSKAENETDLIGFNEIHQGNDTDYLFPITRLVPVQQATPAINVDSTTNYDLQDNSNSLQSLTLSMGSGKGSTCETTTPDNTSNTTVDVTPRRTLDTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQSRKGRQGGYDKEEKAARAYDLAALKYWGTSTTTNFPISNYEKEVEEMKHMTRQEFVAAIRRKSSGFSRGASMYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTEEEAAEAYDIAAIKFRGLNAVTNFDMSRYDVKSILESNTLPIGGGAAKRLKEAQAIESSRKRDEMIALGSSSSFQYGSSSTNSSNHRLQQPNYPLLQQQQPQPNLNLDHHNLQTQPLLSLQNHHDISHYTHDPASFHHSSYMHTHLQLHHHQSDSPYGSNNHQFYGGGGGGGGYLHNHPALLHGMINMGGGGGGGSNLETNNSNANSFNNPNSNTNGGYLGNAFGMGSTSSAANGGAPAEEYALVKVDYDMPNSGGYGGWSGDSVQGSNNGVFSMWND 585
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 46412527 46415753 + Lag0010329.1 Lac9g2842 621768
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac9g2842 585 SMART rav1_2 175 244 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac9g2842 585 SMART rav1_2 274 338 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac9g2842 585 CDD AP2 174 240 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac9g2842 585 MobiDBLite consensus disorder prediction 136 157 - -
Lac9g2842 585 PRINTS Ethylene responsive element binding protein signature 176 187 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac9g2842 585 PRINTS Ethylene responsive element binding protein signature 314 334 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac9g2842 585 ProSiteProfiles AP2/ERF domain profile. 175 238 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac9g2842 585 Gene3D AP2/ERF domain 274 334 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac9g2842 585 Gene3D AP2/ERF domain 175 240 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac9g2842 585 ProSiteProfiles AP2/ERF domain profile. 274 332 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac9g2842 585 SUPERFAMILY DNA-binding domain 174 240 IPR016177 GO:0003677(InterPro)
Lac9g2842 585 FunFam AP2-like ethylene-responsive transcription factor ANT 174 240 - -
Lac9g2842 585 Pfam AP2 domain 275 324 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac9g2842 585 CDD AP2 273 334 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac9g2842 585 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 134 435 - -
Lac9g2842 585 FunFam AP2-like ethylene-responsive transcription factor 273 334 - -
Lac9g2842 585 SUPERFAMILY DNA-binding domain 273 334 IPR016177 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac2g0425 Lac-Chr2:3095792 Lac9g2842 Lac-Chr9:46412527 5.40E-91 dispersed
Lac3g0326 Lac-Chr3:2331928 Lac9g2842 Lac-Chr9:46412527 2.50E-97 dispersed
Lac5g1833 Lac-Chr5:36354752 Lac9g2842 Lac-Chr9:46412527 1.70E-96 dispersed
Lac8g0535 Lac-Chr8:7699221 Lac9g2842 Lac-Chr9:46412527 4.50E-65 dispersed
Lac9g2541 Lac-Chr9:44060890 Lac9g2842 Lac-Chr9:46412527 2.60E-41 dispersed
Lac9g2842 Lac-Chr9:46412527 Lac5g2544 Lac-Chr5:43994781 8.30E-07 dispersed
Lac9g2842 Lac-Chr9:46412527 Lac6g1794 Lac-Chr6:28856523 2.30E-105 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
24534 PF00847 AP2 2.80E-09 CL0081 Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac9g2842 K09285 - csv:101207097 884.789