Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lac9g2843 | ATGGATTCGGCTCACCCATCCGCTCCAGAGCTCGATCTACACAATCTCACAGCCCTCAAGGTCCTCGGCAAAGGAGCCATGGGGACCGTCTTTCTCGTACACGAACGGATCCTTCATGACGACGCTGCTAATTTCCCTTTCGCTCTCAAGGTCGTCGAGAAATCCTCTTTCGTCTCCAAGCTCGACGCCGAGCGCCGAGCCCGTTGGGAGATTCAGGTTCTTTCCCGCTTGTCACTCCCTAAACCCCACCCCTTTCTTCCTCACATTCTCGGTTCTTTCGAGTCCGACGAGTTTCTGGGCTGGGCGGTTCCCTACTGTCCCGGCGGCGACCTCAACGTCTTGCGTTATCGCCAAATGGACCGGGTTTTTTCACCGGCTGTCATTCGGTTTTATTTGGCCGAGATCGTCTGTGCGCTCGAGCATCTTCACAGCATGGACATCGTCTACCGAGATTTGAAGCCGGAGAATGTGTTGATTCAACAATCGGGTCACGTCACTCTCACGGATTTTGATTTGTCGCGTAATTTGACTCACAGACCATTAAAAGACGTCGTTTCGCTTGATAATTCCGGCCACGAGAAGCCGCCGGTGCCCGTACGGCAAAAGCACCGTCGGAATTTGACGCGATGGATCATGTCGACCTCCAACGTTAAAAACGGTTTGAAGAAGGCTAAATCGGCTCGGGTCAGCCCTGTGAGCCGGCGGAAGCCGAGTTTTACCAATGGCGAGCGGTCGAACTCGTTCGTCGGAACGGAGGAGTACGTTTCGCCGGAGATAGTTCGAGGAGACGGACATGAATTCGCCGTCGACTGGTGGGCCCTGGGGATTCTCACGTACGAGATGCTCTATGGGAGGACGCCGTTTAAGGGAAAGAACCGGAAAGAAACCTTTCGAAACGTTCTGGTCAAAGCTCCGGAGTTGATCGGGAAACGTTCGGATTTAACGGATTTGATCGAACGGTTGCTGGTCAAGGACCCCACCAGGCGGTTGGGGTACGTACGGGGCGCGTGTGAGATCAAAGAGCATGCGTTTTTTAACGGCGTTAAGTGGGACCTATTAACGGAGGTCATGAGACCGCCATTTTTACCGCCTCGTGAAGAAAGAGAATGGATGGAGAATTTAACTCCCGGTGGTGTGGGTATAACGGAATACTTTCACAGACAGAGATTTCCGGCTTCGATTCCAGCGTCGCCGTCGTCGTCTCCGTCGACCTCCTTCCATTGGCAGAATAACAGCATATCTTTAACGGAGTTCTGA | 1257 | 53.3 | MDSAHPSAPELDLHNLTALKVLGKGAMGTVFLVHERILHDDAANFPFALKVVEKSSFVSKLDAERRARWEIQVLSRLSLPKPHPFLPHILGSFESDEFLGWAVPYCPGGDLNVLRYRQMDRVFSPAVIRFYLAEIVCALEHLHSMDIVYRDLKPENVLIQQSGHVTLTDFDLSRNLTHRPLKDVVSLDNSGHEKPPVPVRQKHRRNLTRWIMSTSNVKNGLKKAKSARVSPVSRRKPSFTNGERSNSFVGTEEYVSPEIVRGDGHEFAVDWWALGILTYEMLYGRTPFKGKNRKETFRNVLVKAPELIGKRSDLTDLIERLLVKDPTRRLGYVRGACEIKEHAFFNGVKWDLLTEVMRPPFLPPREEREWMENLTPGGVGITEYFHRQRFPASIPASPSSSPSTSFHWQNNSISLTEF | 418 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
9 | 46427422 | 46428678 | + | Lag0010330.1 | Lac9g2843 | 621769 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lac9g2843 | 418 | SMART | serkin_6 | 16 | 345 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Lac9g2843 | 418 | SUPERFAMILY | Protein kinase-like (PK-like) | 15 | 412 | IPR011009 | - | |
Lac9g2843 | 418 | ProSitePatterns | Protein kinases ATP-binding region signature. | 22 | 50 | IPR017441 | GO:0005524(InterPro) | |
Lac9g2843 | 418 | FunFam | Serine/threonine-protein kinase OXI1 | 110 | 178 | - | - | |
Lac9g2843 | 418 | FunFam | Serine/threonine-protein kinase UCNL | 16 | 109 | - | - | |
Lac9g2843 | 418 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 147 | 159 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Lac9g2843 | 418 | MobiDBLite | consensus disorder prediction | 222 | 244 | - | - | |
Lac9g2843 | 418 | Gene3D | Phosphorylase Kinase; domain 1 | 15 | 109 | - | - | |
Lac9g2843 | 418 | Gene3D | Transferase(Phosphotransferase) domain 1 | 241 | 364 | - | - | |
Lac9g2843 | 418 | Gene3D | Transferase(Phosphotransferase) domain 1 | 110 | 178 | - | - | |
Lac9g2843 | 418 | ProSiteProfiles | Protein kinase domain profile. | 16 | 345 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Lac9g2843 | 418 | Pfam | Protein kinase domain | 18 | 183 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Lac9g2843 | 418 | Pfam | Protein kinase domain | 240 | 345 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Lac9g2843 | 418 | FunFam | Serine/threonine-protein kinase OXI1 | 243 | 364 | - | - | |
Lac9g2843 | 418 | PANTHER | FLIPPASE KINASE 1-RELATED | 10 | 366 | - | GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lac4g1946 | Lac-Chr4:38951202 | Lac9g2843 | Lac-Chr9:46427422 | 8.80E-75 | dispersed | |
Lac9g2687 | Lac-Chr9:45166135 | Lac9g2843 | Lac-Chr9:46427422 | 1.70E-64 | dispersed | |
Lac9g2690 | Lac-Chr9:45182631 | Lac9g2843 | Lac-Chr9:46427422 | 1.80E-46 | dispersed | |
Lac9g2843 | Lac-Chr9:46427422 | Lac4g1857 | Lac-Chr4:37880167 | 1.50E-34 | dispersed | |
Lac9g2843 | Lac-Chr9:46427422 | Lac1g2249 | Lac-Chr1:43934847 | 8.20E-65 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
86479 | PF00069 | Pkinase | 1.20E-29 | CL0016 | Lac | PK |
Pathway information
