Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac9g2843 ATGGATTCGGCTCACCCATCCGCTCCAGAGCTCGATCTACACAATCTCACAGCCCTCAAGGTCCTCGGCAAAGGAGCCATGGGGACCGTCTTTCTCGTACACGAACGGATCCTTCATGACGACGCTGCTAATTTCCCTTTCGCTCTCAAGGTCGTCGAGAAATCCTCTTTCGTCTCCAAGCTCGACGCCGAGCGCCGAGCCCGTTGGGAGATTCAGGTTCTTTCCCGCTTGTCACTCCCTAAACCCCACCCCTTTCTTCCTCACATTCTCGGTTCTTTCGAGTCCGACGAGTTTCTGGGCTGGGCGGTTCCCTACTGTCCCGGCGGCGACCTCAACGTCTTGCGTTATCGCCAAATGGACCGGGTTTTTTCACCGGCTGTCATTCGGTTTTATTTGGCCGAGATCGTCTGTGCGCTCGAGCATCTTCACAGCATGGACATCGTCTACCGAGATTTGAAGCCGGAGAATGTGTTGATTCAACAATCGGGTCACGTCACTCTCACGGATTTTGATTTGTCGCGTAATTTGACTCACAGACCATTAAAAGACGTCGTTTCGCTTGATAATTCCGGCCACGAGAAGCCGCCGGTGCCCGTACGGCAAAAGCACCGTCGGAATTTGACGCGATGGATCATGTCGACCTCCAACGTTAAAAACGGTTTGAAGAAGGCTAAATCGGCTCGGGTCAGCCCTGTGAGCCGGCGGAAGCCGAGTTTTACCAATGGCGAGCGGTCGAACTCGTTCGTCGGAACGGAGGAGTACGTTTCGCCGGAGATAGTTCGAGGAGACGGACATGAATTCGCCGTCGACTGGTGGGCCCTGGGGATTCTCACGTACGAGATGCTCTATGGGAGGACGCCGTTTAAGGGAAAGAACCGGAAAGAAACCTTTCGAAACGTTCTGGTCAAAGCTCCGGAGTTGATCGGGAAACGTTCGGATTTAACGGATTTGATCGAACGGTTGCTGGTCAAGGACCCCACCAGGCGGTTGGGGTACGTACGGGGCGCGTGTGAGATCAAAGAGCATGCGTTTTTTAACGGCGTTAAGTGGGACCTATTAACGGAGGTCATGAGACCGCCATTTTTACCGCCTCGTGAAGAAAGAGAATGGATGGAGAATTTAACTCCCGGTGGTGTGGGTATAACGGAATACTTTCACAGACAGAGATTTCCGGCTTCGATTCCAGCGTCGCCGTCGTCGTCTCCGTCGACCTCCTTCCATTGGCAGAATAACAGCATATCTTTAACGGAGTTCTGA 1257 53.3 MDSAHPSAPELDLHNLTALKVLGKGAMGTVFLVHERILHDDAANFPFALKVVEKSSFVSKLDAERRARWEIQVLSRLSLPKPHPFLPHILGSFESDEFLGWAVPYCPGGDLNVLRYRQMDRVFSPAVIRFYLAEIVCALEHLHSMDIVYRDLKPENVLIQQSGHVTLTDFDLSRNLTHRPLKDVVSLDNSGHEKPPVPVRQKHRRNLTRWIMSTSNVKNGLKKAKSARVSPVSRRKPSFTNGERSNSFVGTEEYVSPEIVRGDGHEFAVDWWALGILTYEMLYGRTPFKGKNRKETFRNVLVKAPELIGKRSDLTDLIERLLVKDPTRRLGYVRGACEIKEHAFFNGVKWDLLTEVMRPPFLPPREEREWMENLTPGGVGITEYFHRQRFPASIPASPSSSPSTSFHWQNNSISLTEF 418
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 46427422 46428678 + Lag0010330.1 Lac9g2843 621769
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac9g2843 418 SMART serkin_6 16 345 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac9g2843 418 SUPERFAMILY Protein kinase-like (PK-like) 15 412 IPR011009 -
Lac9g2843 418 ProSitePatterns Protein kinases ATP-binding region signature. 22 50 IPR017441 GO:0005524(InterPro)
Lac9g2843 418 FunFam Serine/threonine-protein kinase OXI1 110 178 - -
Lac9g2843 418 FunFam Serine/threonine-protein kinase UCNL 16 109 - -
Lac9g2843 418 ProSitePatterns Serine/Threonine protein kinases active-site signature. 147 159 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac9g2843 418 MobiDBLite consensus disorder prediction 222 244 - -
Lac9g2843 418 Gene3D Phosphorylase Kinase; domain 1 15 109 - -
Lac9g2843 418 Gene3D Transferase(Phosphotransferase) domain 1 241 364 - -
Lac9g2843 418 Gene3D Transferase(Phosphotransferase) domain 1 110 178 - -
Lac9g2843 418 ProSiteProfiles Protein kinase domain profile. 16 345 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac9g2843 418 Pfam Protein kinase domain 18 183 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac9g2843 418 Pfam Protein kinase domain 240 345 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac9g2843 418 FunFam Serine/threonine-protein kinase OXI1 243 364 - -
Lac9g2843 418 PANTHER FLIPPASE KINASE 1-RELATED 10 366 - GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac4g1946 Lac-Chr4:38951202 Lac9g2843 Lac-Chr9:46427422 8.80E-75 dispersed
Lac9g2687 Lac-Chr9:45166135 Lac9g2843 Lac-Chr9:46427422 1.70E-64 dispersed
Lac9g2690 Lac-Chr9:45182631 Lac9g2843 Lac-Chr9:46427422 1.80E-46 dispersed
Lac9g2843 Lac-Chr9:46427422 Lac4g1857 Lac-Chr4:37880167 1.50E-34 dispersed
Lac9g2843 Lac-Chr9:46427422 Lac1g2249 Lac-Chr1:43934847 8.20E-65 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86479 PF00069 Pkinase 1.20E-29 CL0016 Lac PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac9g2843 - - - 0.0