Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac9g2881 ATGAAAACCAAGGGTCCTTTTGCTCTGCTGATTATGATTGTTTTTCTCCTGCTTTGTGGTTCCACAAGGTCGCAATTAACTGTGGATTTCTATAAGAGTTCATGTCCAAACCTTCTCAGAATCGTGAGAAGAGAAGTCGTGAATGCTCTCAAGAACGAGATGCGAATGGCCGCTTCGCTTCTTCGTCTCCACTTCCACGACTGCTTTGTTAACGGTTGTGACGGATCGGTGCTGCTGGATGGAAGTGATGGGGAGAAATTTGCACTTCCGAATATCAATTCTCTTAGAGGGCTTGAAGTTATGGACACAATCAAAACCGCAGTGGAAAATTCTTGCAGTGGAGTTGTATCGTGTGCTGATATATTAACCATAGCTGCCAGGGATTCTGTTCTATTGAGTGGAGGACCAACGTGGAGGGTTTTATTAGGGAGAAGGGATGGATTGGTAGCGAACCAAACAGGAGCCAATCAAGGACTGCCCGCTCCATTTGAAGATCTGGATGGTATTGTCAACAAGTTCACTGATGTTGGCCTTGATCTCACTGACGTCGTTGCTCTATCTGGAGCCCATACAATTGGATTCGCAAGGTGTGCGATGTTCAACAACAGGCTATTCAACTTCTCAGGAACTGGGTCTCCAGACCCGACCATGGAGAGCAGAATGGTGTCGGATCTGCAAACTCTGTGCCCTCTCACCGACGACGGCAACAAGACCACAGTTCTCGACAGAAACTCCACCGATTTATTCGACAACCATTACTACAACAACTTGCTCAACCAAAAGGGCCTCTTGGAATCCGACCAAATGCTGTTCTCAAGCACTGCAGCTCAAACCACCACAAAAAGCTTGGTCGAAGCTTATAGCTCCAACACCACGCTTTTCTTCAAAGACTTTGCCAGAGCCATGACCAAGATGGGGAATATAAGCCCACTCACTGGCTCCAATGGAGAGATCCGAAAGAATTGCAGAGTGGTTAATTCCTAA 984 46.75 MKTKGPFALLIMIVFLLLCGSTRSQLTVDFYKSSCPNLLRIVRREVVNALKNEMRMAASLLRLHFHDCFVNGCDGSVLLDGSDGEKFALPNINSLRGLEVMDTIKTAVENSCSGVVSCADILTIAARDSVLLSGGPTWRVLLGRRDGLVANQTGANQGLPAPFEDLDGIVNKFTDVGLDLTDVVALSGAHTIGFARCAMFNNRLFNFSGTGSPDPTMESRMVSDLQTLCPLTDDGNKTTVLDRNSTDLFDNHYYNNLLNQKGLLESDQMLFSSTAAQTTTKSLVEAYSSNTTLFFKDFARAMTKMGNISPLTGSNGEIRKNCRVVNS 327
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 46741595 46743595 + Lag0010368.1 Lac9g2881 621807
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac9g2881 327 Pfam Peroxidase 42 289 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac9g2881 327 Gene3D Peroxidase, domain 2 160 305 - -
Lac9g2881 327 PRINTS Haem peroxidase superfamily signature 116 133 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac9g2881 327 PRINTS Haem peroxidase superfamily signature 182 197 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac9g2881 327 PRINTS Haem peroxidase superfamily signature 134 146 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac9g2881 327 PRINTS Haem peroxidase superfamily signature 57 71 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac9g2881 327 PRINTS Haem peroxidase superfamily signature 242 257 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac9g2881 327 FunFam Peroxidase 29 171 - -
Lac9g2881 327 CDD secretory_peroxidase 25 325 IPR033905 GO:0004601(InterPro)|GO:0042744(InterPro)
Lac9g2881 327 ProSiteProfiles Plant heme peroxidase family profile. 25 326 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac9g2881 327 PANTHER PEROXIDASE 72-RELATED 10 325 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac9g2881 327 FunFam Peroxidase 160 305 - -
Lac9g2881 327 PRINTS Plant peroxidase signature 35 54 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac9g2881 327 PRINTS Plant peroxidase signature 256 273 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac9g2881 327 PRINTS Plant peroxidase signature 181 193 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac9g2881 327 PRINTS Plant peroxidase signature 96 109 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac9g2881 327 PRINTS Plant peroxidase signature 300 313 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac9g2881 327 PRINTS Plant peroxidase signature 59 79 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac9g2881 327 PRINTS Plant peroxidase signature 134 149 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac9g2881 327 PRINTS Plant peroxidase signature 240 255 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac9g2881 327 PRINTS Plant peroxidase signature 115 125 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac9g2881 327 ProSitePatterns Peroxidases proximal heme-ligand signature. 182 192 IPR019793 -
Lac9g2881 327 Gene3D - 30 326 - -
Lac9g2881 327 ProSitePatterns Peroxidases active site signature. 57 68 IPR019794 GO:0004601(InterPro)
Lac9g2881 327 SUPERFAMILY Heme-dependent peroxidases 25 326 IPR010255 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac1g2545 Lac-Chr1:46818589 Lac9g2881 Lac-Chr9:46741595 2.30E-94 dispersed
Lac5g1970 Lac-Chr5:38109412 Lac9g2881 Lac-Chr9:46741595 6.50E-70 dispersed
Lac9g1594 Lac-Chr9:35150553 Lac9g2881 Lac-Chr9:46741595 6.30E-75 dispersed
Lac9g2070 Lac-Chr9:40326885 Lac9g2881 Lac-Chr9:46741595 4.60E-63 dispersed
Lac9g2344 Lac-Chr9:42723202 Lac9g2881 Lac-Chr9:46741595 1.50E-74 dispersed
Lac9g2346 Lac-Chr9:42737652 Lac9g2881 Lac-Chr9:46741595 3.20E-77 dispersed
Lac9g2881 Lac-Chr9:46741595 Lac9g2891 Lac-Chr9:46801022 1.20E-82 dispersed
Lac9g2881 Lac-Chr9:46741595 Lac9g2882 Lac-Chr9:46745675 3.60E-84 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac9g2881 K00430 - csv:101211257 538.88